Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47500 * 2 1 4 4 C 1.42902 * 114.00020 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47052 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47052 * 64.99858 * 5 4 3 7 7 C 1.42902 * 114.00031 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47264 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.75213 * 269.72235 * 8 7 6 10 10 C 1.37614 * 120.25123 * 179.71891 * 9 8 7 11 11 C 1.40719 * 119.74124 * 0.57305 * 10 9 8 12 12 C 1.41395 * 120.24246 * 179.67718 * 11 10 9 13 13 H 1.07998 * 119.99970 * 155.30784 * 12 11 10 14 14 C 1.39951 * 120.00207 * 335.31835 * 12 11 10 15 15 N 1.30818 * 119.99753 * 342.22830 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 162.22875 * 14 12 11 17 17 H 1.48500 * 109.47048 * 94.66426 * 16 14 12 18 18 H 1.48498 * 109.47252 * 214.66382 * 16 14 12 19 19 H 1.48496 * 109.47461 * 334.66371 * 16 14 12 20 20 C 1.40704 * 119.51466 * 359.70404 * 11 10 9 21 21 C 1.37620 * 119.74516 * 359.97438 * 20 11 10 22 22 H 1.08998 * 109.47364 * 59.99431 * 1 2 3 23 23 H 1.08995 * 109.47767 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46783 * 300.00070 * 1 2 3 25 25 H 1.09005 * 109.46783 * 239.99930 * 2 1 3 26 26 H 1.09003 * 109.47151 * 120.00119 * 2 1 3 27 27 H 1.08995 * 109.47056 * 59.99764 * 4 3 2 28 28 H 1.09001 * 109.46744 * 299.99865 * 4 3 2 29 29 H 1.09002 * 109.47121 * 304.99990 * 5 4 3 30 30 H 1.08991 * 109.47294 * 184.99691 * 5 4 3 31 31 H 1.08998 * 109.47199 * 59.99761 * 7 6 5 32 32 H 1.09001 * 109.47096 * 299.99734 * 7 6 5 33 33 H 1.08005 * 119.87401 * 359.97438 * 9 8 7 34 34 H 1.07997 * 120.13194 * 180.28480 * 10 9 8 35 35 H 0.97004 * 119.99893 * 180.02562 * 15 14 12 36 36 H 1.08007 * 120.13445 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87742 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 8 3.3987 3.5456 1.2199 7 6 3.7195 4.9344 1.3214 8 6 3.2252 5.4691 2.6407 9 6 1.9475 5.9991 2.7330 10 6 1.4835 6.4849 3.9340 11 6 2.3158 6.4532 5.0683 12 6 1.8523 6.9558 6.3060 13 1 2.2810 6.5958 7.2295 14 6 0.8379 7.9195 6.3342 15 7 0.5585 8.6068 5.2568 16 14 -0.1170 8.2244 7.9105 17 1 0.4993 9.3539 8.6519 18 1 -1.5252 8.5595 7.5791 19 1 -0.0842 7.0024 8.7534 20 6 3.6128 5.9183 4.9616 21 6 4.0534 5.4320 3.7519 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8333 0.9765 -0.8907 28 1 3.8340 0.9763 0.8892 29 1 3.3494 3.4410 -0.8430 30 1 4.9082 3.0252 -0.0911 31 1 3.2409 5.4784 0.5070 32 1 4.8001 5.0633 1.2586 33 1 1.3123 6.0271 1.8599 34 1 0.4862 6.8932 4.0048 35 1 -0.1444 9.2750 5.2765 36 1 4.2602 5.8893 5.8256 37 1 5.0484 5.0205 3.6677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399172679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -104.676261 kcal Electronic energy + Delta-G solvation = -17460.997314 eV Core-core repulsion = 14588.029539 eV Total energy + Delta-G solvation = -2872.967774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81021 -39.13914 -38.02588 -35.63577 -32.99040 -32.14049 -31.18956 -30.08337 -28.28290 -25.22985 -23.66493 -23.42485 -22.91060 -21.80023 -19.24317 -17.97612 -17.72444 -17.26428 -16.58655 -16.52123 -16.32788 -15.73440 -15.30183 -15.11922 -14.41279 -14.26966 -13.85873 -13.74463 -13.46856 -13.29783 -12.97612 -12.84863 -12.69485 -12.48954 -12.25709 -12.17392 -12.01621 -11.84028 -11.41684 -11.28935 -11.01210 -10.53765 -10.44633 -9.39461 -9.28146 -8.66121 -6.36431 0.87719 1.13299 1.37849 1.47412 1.54304 2.20418 2.61124 2.79467 3.09908 3.77605 4.08446 4.16462 4.23977 4.27862 4.30277 4.39282 4.48526 4.50904 4.54945 4.56731 4.63161 4.68990 4.80047 4.91040 5.02600 5.03422 5.14489 5.26171 5.34684 5.44105 5.68787 5.92225 6.08206 6.21272 6.29998 6.35632 6.47425 6.67613 6.91508 7.01208 8.31524 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.004202 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.231326 B = 6662.234769 C = 7287.541366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.415 6.415 4 C 0.063 3.937 5 C 0.052 3.948 6 O -0.406 6.406 7 C 0.133 3.867 8 C -0.221 4.221 9 C -0.089 4.089 10 C -0.194 4.194 11 C 0.083 3.917 12 C -0.501 4.501 13 H 0.077 0.923 14 C 0.035 3.965 15 N -0.824 5.824 16 Si 0.984 3.016 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.247 4.247 21 C -0.072 4.072 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -11.693 -9.852 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.335 6.335 4 C -0.013 4.013 5 C -0.024 4.024 6 O -0.326 6.326 7 C 0.057 3.943 8 C -0.222 4.222 9 C -0.107 4.107 10 C -0.213 4.213 11 C 0.081 3.919 12 C -0.530 4.530 13 H 0.095 0.905 14 C -0.180 4.180 15 N -0.449 5.449 16 Si 0.804 3.196 17 H -0.184 1.184 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.266 4.266 21 C -0.090 4.090 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.575 -11.440 -9.812 15.290 hybrid contribution -0.237 0.380 0.514 0.682 sum 2.338 -11.059 -9.297 14.636 Atomic orbital electron populations 1.21775 0.93567 1.03303 1.02247 1.22648 0.96078 0.83014 1.00906 1.87971 1.21990 1.27985 1.95577 1.22668 0.81328 0.95477 1.01814 1.22753 0.99573 0.92894 0.87218 1.88077 1.81704 1.23911 1.38915 1.21011 0.98421 0.80963 0.93874 1.19269 0.96423 1.10626 0.95853 1.20789 0.95348 0.97946 0.96621 1.21257 0.99992 1.06427 0.93652 1.18011 0.90985 0.89230 0.93680 1.19884 1.18509 1.20829 0.93765 0.90456 1.26814 0.96290 0.93359 1.01550 1.69881 1.26446 1.16902 1.31692 0.85168 0.77632 0.79504 0.77254 1.18442 1.18952 1.18280 1.21191 0.96307 1.11503 0.97620 1.20721 0.98587 0.97497 0.92235 0.92159 0.88720 0.93625 0.91377 0.93271 0.88841 0.92909 0.92682 0.89542 0.93308 0.91858 0.88124 0.88136 0.90023 0.88094 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 10.28 71.98 0.74 -2.24 16 2 C 0.05 1.04 6.66 71.98 0.48 1.52 16 3 O -0.41 -11.99 10.31 -144.34 -1.49 -13.47 16 4 C 0.06 1.47 6.32 71.98 0.45 1.92 16 5 C 0.05 1.34 6.32 71.98 0.45 1.79 16 6 O -0.41 -14.99 10.29 -144.34 -1.49 -16.48 16 7 C 0.13 4.84 6.05 71.24 0.43 5.27 16 8 C -0.22 -10.15 5.53 -19.67 -0.11 -10.26 16 9 C -0.09 -4.47 9.67 22.22 0.21 -4.25 16 10 C -0.19 -10.88 8.70 22.73 0.20 -10.68 16 11 C 0.08 4.74 5.57 -21.29 -0.12 4.62 16 12 C -0.50 -28.07 9.05 23.46 0.21 -27.86 16 13 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 14 C 0.04 1.82 5.14 85.26 0.44 2.26 16 15 N -0.82 -44.34 10.97 21.83 0.24 -44.10 16 16 Si 0.98 39.05 29.59 68.60 2.03 41.08 16 17 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 18 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 C -0.25 -12.76 9.80 22.73 0.22 -12.53 16 21 C -0.07 -3.35 9.67 22.22 0.21 -3.13 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 32 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.10 5.86 6.18 -2.91 -0.02 5.84 16 35 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 36 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -66.41 317.23 4.16 -62.25 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.03 Total: 24.30 kcal Atomic # 6 Polarization: -57.41 SS G_CDS: 3.83 Total: -53.58 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.24 Total: -44.10 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -2.97 Total: -29.95 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -66.41 4.16 -62.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399172679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.427 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds