Wall clock time and date at job start Mon Mar 30 2020 06:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99934 * 2 1 4 4 C 1.53001 * 109.47194 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47211 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47052 * 179.97438 * 5 4 3 7 7 C 1.42902 * 114.00031 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47264 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.75213 * 269.72235 * 8 7 6 10 10 C 1.37614 * 120.25123 * 179.71891 * 9 8 7 11 11 C 1.40719 * 119.74124 * 0.57305 * 10 9 8 12 12 C 1.41395 * 120.24246 * 179.67718 * 11 10 9 13 13 H 1.07998 * 119.99970 * 155.30784 * 12 11 10 14 14 C 1.39951 * 120.00207 * 335.31835 * 12 11 10 15 15 N 1.30818 * 119.99753 * 342.22830 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 162.22875 * 14 12 11 17 17 H 1.48500 * 109.47048 * 94.66426 * 16 14 12 18 18 H 1.48498 * 109.47252 * 214.66382 * 16 14 12 19 19 H 1.48496 * 109.47461 * 334.66371 * 16 14 12 20 20 C 1.40704 * 119.51466 * 359.70404 * 11 10 9 21 21 C 1.37620 * 119.74516 * 359.97438 * 20 11 10 22 22 H 1.08994 * 109.47415 * 60.00293 * 1 2 3 23 23 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46879 * 299.99937 * 1 2 3 25 25 H 1.08993 * 109.47295 * 59.99918 * 3 2 1 26 26 H 1.08998 * 109.46858 * 299.99560 * 3 2 1 27 27 H 1.09006 * 109.47585 * 59.99793 * 4 3 2 28 28 H 1.09008 * 109.47030 * 299.99808 * 4 3 2 29 29 H 1.09002 * 109.47121 * 59.99977 * 5 4 3 30 30 H 1.08991 * 109.47294 * 299.99677 * 5 4 3 31 31 H 1.08998 * 109.47199 * 59.99761 * 7 6 5 32 32 H 1.09001 * 109.47096 * 299.99734 * 7 6 5 33 33 H 1.08005 * 119.87401 * 359.97438 * 9 8 7 34 34 H 1.07997 * 120.13194 * 180.28480 * 10 9 8 35 35 H 0.97004 * 119.99893 * 180.02562 * 15 14 12 36 36 H 1.08007 * 120.13445 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87742 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 8 5.5823 2.4696 -0.0013 7 6 6.2648 3.7251 -0.0013 8 6 7.7530 3.4878 -0.0007 9 6 8.4328 3.3856 1.2032 10 6 9.7908 3.1633 1.2158 11 6 10.4912 3.0518 0.0004 12 6 11.8877 2.8302 0.0010 13 1 12.3601 2.3594 -0.8484 14 6 12.6578 3.2207 1.1024 15 7 12.1793 4.0826 1.9624 16 14 14.3687 2.5113 1.3445 17 1 15.3741 3.4316 0.7550 18 1 14.6368 2.3496 2.7961 19 1 14.4556 1.1888 0.6748 20 6 9.7918 3.1630 -1.2154 21 6 8.4327 3.3787 -1.2040 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8568 0.6439 -0.8909 28 1 3.8574 0.6436 0.8892 29 1 3.8365 3.1236 0.8887 30 1 3.8358 3.1230 -0.8912 31 1 5.9868 4.2897 0.8887 32 1 5.9869 4.2897 -0.8913 33 1 7.8939 3.4766 2.1348 34 1 10.3177 3.0793 2.1548 35 1 12.7132 4.3536 2.7256 36 1 10.3195 3.0795 -2.1541 37 1 7.8937 3.4640 -2.1360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399179734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:50 Heat of formation + Delta-G solvation = -89.630664 kcal Electronic energy + Delta-G solvation = -17094.665574 eV Core-core repulsion = 14222.350226 eV Total energy + Delta-G solvation = -2872.315348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.38975 -37.90650 -36.88461 -33.86034 -32.70658 -30.39508 -29.25995 -27.44809 -26.60528 -24.71233 -23.37905 -21.61232 -20.98344 -19.92568 -17.30218 -16.82221 -16.53876 -16.00387 -15.49840 -15.25594 -14.91268 -14.68455 -13.88999 -13.87920 -13.08976 -13.01522 -12.41930 -12.03664 -12.01950 -11.92032 -11.65145 -11.41763 -11.15646 -11.02568 -10.99114 -10.89833 -10.43713 -10.41359 -9.90156 -9.58924 -9.40781 -9.20259 -9.09155 -7.45489 -7.34260 -6.78181 -4.36676 2.67969 3.06648 3.08288 3.09952 3.15013 3.44071 3.92414 4.33662 4.71160 4.82397 4.96027 5.06838 5.15051 5.16200 5.33688 5.37213 5.44209 5.55362 5.74372 5.80233 5.84780 6.08312 6.14876 6.19462 6.38363 6.41436 6.92240 6.95591 7.06466 7.28696 7.36866 7.61672 7.66400 7.87838 8.05245 8.12611 8.29280 8.63519 8.88369 8.97061 10.16443 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048513 B = 0.003163 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.025791 B = 8850.354599 C = 8963.267093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.119 4.119 5 C 0.064 3.936 6 O -0.381 6.381 7 C 0.129 3.871 8 C -0.224 4.224 9 C -0.080 4.080 10 C -0.169 4.169 11 C 0.116 3.884 12 C -0.460 4.460 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.230 4.230 21 C -0.069 4.069 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.281 0.719 36 H 0.093 0.907 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.281 -2.054 -1.171 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.157 4.157 5 C -0.014 4.014 6 O -0.301 6.301 7 C 0.054 3.946 8 C -0.225 4.225 9 C -0.098 4.098 10 C -0.189 4.189 11 C 0.113 3.887 12 C -0.490 4.490 13 H 0.097 0.903 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.250 4.250 21 C -0.087 4.087 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.001 -2.250 -0.955 15.199 hybrid contribution 0.383 0.338 0.185 0.543 sum -14.618 -1.912 -0.770 14.763 Atomic orbital electron populations 1.22737 0.81080 1.02746 0.99920 1.87887 1.19633 1.28062 1.95415 1.22405 0.93926 0.84589 1.00201 1.21377 0.92051 0.97478 1.04762 1.22186 0.83524 0.96063 0.99577 1.88080 1.15708 1.31159 1.95174 1.21110 0.90881 0.84248 0.98375 1.18747 0.91418 1.18478 0.93872 1.20525 0.94737 0.99420 0.95153 1.21291 0.92303 1.06525 0.98758 1.17658 0.93120 0.86988 0.90922 1.19625 0.92340 1.34834 1.02164 0.90339 1.25940 1.00664 0.92867 0.94772 1.69830 1.38287 1.22420 1.11068 0.86306 0.81476 0.80597 0.78403 1.19559 1.20001 1.18368 1.20955 0.93846 1.13108 0.97067 1.20368 0.94293 0.98832 0.95254 0.94112 0.89619 0.94097 0.93184 0.93207 0.90263 0.90236 0.93855 0.93876 0.94278 0.94367 0.89473 0.86396 0.90830 0.88890 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.55 10.70 -35.23 -0.38 -4.92 16 3 C 0.07 0.68 5.94 37.16 0.22 0.90 16 4 C -0.12 -1.51 5.95 -26.73 -0.16 -1.66 16 5 C 0.06 0.87 5.94 37.16 0.22 1.09 16 6 O -0.38 -7.11 10.33 -35.23 -0.36 -7.47 16 7 C 0.13 2.42 6.05 36.00 0.22 2.64 16 8 C -0.22 -5.13 5.53 -104.33 -0.58 -5.71 16 9 C -0.08 -1.93 9.67 -39.66 -0.38 -2.32 16 10 C -0.17 -4.51 8.70 -38.87 -0.34 -4.85 16 11 C 0.12 3.15 5.57 -106.83 -0.60 2.55 16 12 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 13 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 14 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 15 N -0.79 -20.53 10.97 55.55 0.61 -19.92 16 16 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.23 -5.81 9.80 -38.88 -0.38 -6.19 16 21 C -0.07 -1.61 9.67 -39.66 -0.38 -1.99 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.12 3.21 6.18 -52.49 -0.32 2.89 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 37 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -29.13 316.92 -7.65 -36.77 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.79 Total: 2.14 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -1.48 Total: -25.05 kcal Atomic # 7 Polarization: -20.53 SS G_CDS: 0.61 Total: -19.92 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.74 Total: -12.39 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.13 -7.65 -36.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399179734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.856 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds