Wall clock time and date at job start Mon Mar 30 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99934 * 2 1 4 4 C 1.53001 * 109.47194 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47211 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47052 * 179.97438 * 5 4 3 7 7 C 1.42902 * 114.00031 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47264 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.75213 * 269.72235 * 8 7 6 10 10 C 1.37614 * 120.25123 * 179.71891 * 9 8 7 11 11 C 1.40719 * 119.74124 * 0.57305 * 10 9 8 12 12 C 1.41395 * 120.24246 * 179.67718 * 11 10 9 13 13 H 1.07998 * 119.99970 * 155.30784 * 12 11 10 14 14 C 1.39951 * 120.00207 * 335.31835 * 12 11 10 15 15 N 1.30818 * 119.99753 * 342.22830 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 162.22875 * 14 12 11 17 17 H 1.48500 * 109.47048 * 94.66426 * 16 14 12 18 18 H 1.48498 * 109.47252 * 214.66382 * 16 14 12 19 19 H 1.48496 * 109.47461 * 334.66371 * 16 14 12 20 20 C 1.40704 * 119.51466 * 359.70404 * 11 10 9 21 21 C 1.37620 * 119.74516 * 359.97438 * 20 11 10 22 22 H 1.08994 * 109.47415 * 60.00293 * 1 2 3 23 23 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46879 * 299.99937 * 1 2 3 25 25 H 1.08993 * 109.47295 * 59.99918 * 3 2 1 26 26 H 1.08998 * 109.46858 * 299.99560 * 3 2 1 27 27 H 1.09006 * 109.47585 * 59.99793 * 4 3 2 28 28 H 1.09008 * 109.47030 * 299.99808 * 4 3 2 29 29 H 1.09002 * 109.47121 * 59.99977 * 5 4 3 30 30 H 1.08991 * 109.47294 * 299.99677 * 5 4 3 31 31 H 1.08998 * 109.47199 * 59.99761 * 7 6 5 32 32 H 1.09001 * 109.47096 * 299.99734 * 7 6 5 33 33 H 1.08005 * 119.87401 * 359.97438 * 9 8 7 34 34 H 1.07997 * 120.13194 * 180.28480 * 10 9 8 35 35 H 0.97004 * 119.99893 * 180.02562 * 15 14 12 36 36 H 1.08007 * 120.13445 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87742 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 8 5.5823 2.4696 -0.0013 7 6 6.2648 3.7251 -0.0013 8 6 7.7530 3.4878 -0.0007 9 6 8.4328 3.3856 1.2032 10 6 9.7908 3.1633 1.2158 11 6 10.4912 3.0518 0.0004 12 6 11.8877 2.8302 0.0010 13 1 12.3601 2.3594 -0.8484 14 6 12.6578 3.2207 1.1024 15 7 12.1793 4.0826 1.9624 16 14 14.3687 2.5113 1.3445 17 1 15.3741 3.4316 0.7550 18 1 14.6368 2.3496 2.7961 19 1 14.4556 1.1888 0.6748 20 6 9.7918 3.1630 -1.2154 21 6 8.4327 3.3787 -1.2040 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8568 0.6439 -0.8909 28 1 3.8574 0.6436 0.8892 29 1 3.8365 3.1236 0.8887 30 1 3.8358 3.1230 -0.8912 31 1 5.9868 4.2897 0.8887 32 1 5.9869 4.2897 -0.8913 33 1 7.8939 3.4766 2.1348 34 1 10.3177 3.0793 2.1548 35 1 12.7132 4.3536 2.7256 36 1 10.3195 3.0795 -2.1541 37 1 7.8937 3.4640 -2.1360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399179734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:49 Heat of formation + Delta-G solvation = -106.298745 kcal Electronic energy + Delta-G solvation = -17095.388356 eV Core-core repulsion = 14222.350226 eV Total energy + Delta-G solvation = -2873.038131 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79005 -39.05927 -38.32448 -35.68585 -33.83819 -32.14876 -31.17921 -28.77272 -27.73296 -25.78498 -24.97293 -22.91383 -22.60646 -21.73930 -19.24528 -17.79881 -17.47302 -17.27705 -16.98538 -16.49257 -16.31193 -15.72677 -15.62646 -15.35158 -14.63583 -14.33019 -14.05159 -13.82212 -13.37059 -13.09457 -12.97950 -12.74896 -12.64802 -12.54691 -12.24491 -12.09351 -11.98735 -11.89041 -11.41504 -11.28678 -11.01505 -10.63164 -10.45907 -9.39527 -9.28471 -8.66622 -6.36602 0.86961 1.13335 1.37837 1.46951 1.54044 2.20134 2.46263 2.75027 3.34258 3.79181 3.93846 4.15724 4.19422 4.27614 4.35071 4.44143 4.47201 4.52419 4.57027 4.58284 4.59420 4.63619 4.69127 4.86221 5.02746 5.10341 5.14397 5.15206 5.34840 5.44081 5.68775 5.92312 6.08226 6.20766 6.21652 6.35831 6.43176 6.67574 6.91404 7.01015 8.30931 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048513 B = 0.003163 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.025791 B = 8850.354599 C = 8963.267093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.069 3.931 4 C -0.117 4.117 5 C 0.061 3.939 6 O -0.411 6.411 7 C 0.134 3.866 8 C -0.221 4.221 9 C -0.087 4.087 10 C -0.195 4.195 11 C 0.082 3.918 12 C -0.499 4.499 13 H 0.076 0.924 14 C 0.034 3.966 15 N -0.823 5.823 16 Si 0.984 3.016 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.260 1.260 20 C -0.248 4.248 21 C -0.073 4.073 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.794 -1.772 -1.395 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.007 4.007 4 C -0.154 4.154 5 C -0.016 4.016 6 O -0.331 6.331 7 C 0.058 3.942 8 C -0.222 4.222 9 C -0.106 4.106 10 C -0.214 4.214 11 C 0.080 3.920 12 C -0.528 4.528 13 H 0.095 0.905 14 C -0.181 4.181 15 N -0.448 5.448 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.189 1.189 19 H -0.183 1.183 20 C -0.267 4.267 21 C -0.091 4.091 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.546 -1.962 -1.185 16.704 hybrid contribution 0.649 0.254 0.225 0.733 sum -15.897 -1.708 -0.960 16.017 Atomic orbital electron populations 1.22942 0.79165 1.03869 1.01086 1.87838 1.21805 1.28840 1.95672 1.22376 0.92050 0.84566 1.01728 1.21337 0.93992 0.96782 1.03332 1.22415 0.80798 0.96932 1.01435 1.88001 1.18600 1.31016 1.95510 1.21025 0.88090 0.84717 1.00336 1.19263 0.94184 1.15780 0.93019 1.20805 0.94069 0.98866 0.96829 1.21278 0.93489 1.08571 0.98080 1.18026 0.93950 0.88126 0.91898 1.19872 0.92871 1.36645 1.03458 0.90541 1.26813 1.04809 0.92588 0.93893 1.69875 1.40154 1.23162 1.11652 0.85170 0.76087 0.79617 0.78701 1.18490 1.18908 1.18350 1.21191 0.95063 1.13658 0.96809 1.20729 0.93717 0.97756 0.96892 0.92876 0.88679 0.92939 0.91681 0.91547 0.91622 0.91817 0.92056 0.91760 0.92650 0.92070 0.87635 0.88032 0.89998 0.88225 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -9.11 10.70 -148.98 -1.59 -10.70 16 3 C 0.07 1.27 5.94 71.98 0.43 1.70 16 4 C -0.12 -2.77 5.95 30.59 0.18 -2.59 16 5 C 0.06 1.48 5.94 71.98 0.43 1.91 16 6 O -0.41 -14.39 10.33 -148.98 -1.54 -15.93 16 7 C 0.13 4.64 6.05 71.24 0.43 5.07 16 8 C -0.22 -9.86 5.53 -19.67 -0.11 -9.97 16 9 C -0.09 -4.24 9.67 22.22 0.21 -4.03 16 10 C -0.19 -10.69 8.70 22.73 0.20 -10.50 16 11 C 0.08 4.63 5.57 -21.29 -0.12 4.51 16 12 C -0.50 -27.74 9.05 23.46 0.21 -27.53 16 13 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 14 C 0.03 1.76 5.14 85.26 0.44 2.20 16 15 N -0.82 -43.77 10.97 21.83 0.24 -43.54 16 16 Si 0.98 38.77 29.59 68.60 2.03 40.80 16 17 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 C -0.25 -12.69 9.80 22.73 0.22 -12.47 16 21 C -0.07 -3.33 9.67 22.22 0.21 -3.11 16 22 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 33 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 34 H 0.10 5.79 6.18 -2.91 -0.02 5.77 16 35 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 36 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 37 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -64.08 316.92 4.15 -59.93 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.03 Total: 22.66 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 3.99 Total: -53.22 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.24 Total: -43.54 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -3.13 Total: -26.63 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -64.08 4.15 -59.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399179734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.371 kcal (2) G-P(sol) polarization free energy of solvation -64.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds