Wall clock time and date at job start Mon Mar 30 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47346 * 2 1 4 4 H 1.09001 * 109.47155 * 304.99426 * 3 2 1 5 5 O 1.42903 * 109.47380 * 64.99571 * 3 2 1 6 6 C 1.53002 * 109.47275 * 184.99741 * 3 2 1 7 7 H 1.09001 * 109.46772 * 299.99920 * 6 3 2 8 8 C 1.52998 * 109.47275 * 180.02562 * 6 3 2 9 9 O 1.42903 * 109.47055 * 59.99632 * 6 3 2 10 10 C 1.35667 * 116.99905 * 204.54541 * 9 6 3 11 11 C 1.39311 * 119.81717 * 174.97857 * 10 9 6 12 12 C 1.36448 * 120.18577 * 179.72299 * 11 10 9 13 13 C 1.40828 * 119.80944 * 0.28238 * 12 11 10 14 14 C 1.41218 * 120.17847 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00113 * 205.92015 * 14 13 12 16 16 C 1.39891 * 119.99566 * 25.92344 * 14 13 12 17 17 N 1.30885 * 120.00545 * 14.84045 * 16 14 13 18 18 Si 1.86801 * 119.99694 * 194.83755 * 16 14 13 19 19 H 1.48500 * 109.47271 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46828 * 119.99941 * 18 16 14 21 21 H 1.48496 * 109.47458 * 239.99791 * 18 16 14 22 22 C 1.40831 * 119.64606 * 359.97438 * 13 12 11 23 23 C 1.36442 * 119.80749 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47409 * 300.00666 * 1 2 3 25 25 H 1.09003 * 109.46273 * 60.00103 * 1 2 3 26 26 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47409 * 239.99334 * 2 1 3 28 28 H 1.09006 * 109.47168 * 119.99863 * 2 1 3 29 29 H 0.96707 * 113.99665 * 60.00042 * 5 3 2 30 30 H 1.09003 * 109.47257 * 59.99884 * 8 6 3 31 31 H 1.08997 * 109.47353 * 180.02562 * 8 6 3 32 32 H 1.09000 * 109.47312 * 300.00215 * 8 6 3 33 33 H 1.08003 * 119.90481 * 0.02562 * 11 10 9 34 34 H 1.07996 * 120.09226 * 180.29447 * 12 11 10 35 35 H 0.96993 * 120.00462 * 180.02562 * 17 16 14 36 36 H 1.07991 * 120.09589 * 179.97438 * 22 13 12 37 37 H 1.08006 * 119.90466 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6620 2.0815 1.2210 6 6 3.5649 1.4443 -0.1257 7 1 3.9994 0.9052 0.7162 8 6 4.0750 2.8867 -0.1250 9 8 3.9430 0.8053 -1.3467 10 6 5.1855 0.2631 -1.3990 11 6 5.5771 -0.4645 -2.5206 12 6 6.8270 -1.0083 -2.5836 13 6 7.7199 -0.8373 -1.5081 14 6 9.0155 -1.3962 -1.5653 15 1 9.5384 -1.6417 -0.6529 16 6 9.6214 -1.6319 -2.8040 17 7 9.1334 -1.0816 -3.8866 18 14 11.1271 -2.7321 -2.9128 19 1 11.4771 -3.2278 -1.5574 20 1 10.8341 -3.8857 -3.8008 21 1 12.2669 -1.9580 -3.4668 22 6 7.3142 -0.1049 -0.3757 23 6 6.0609 0.4323 -0.3286 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0141 1.6543 2.0139 30 1 3.7866 3.3737 0.8066 31 1 5.1613 2.8880 -0.2150 32 1 3.6404 3.4262 -0.9666 33 1 4.8911 -0.5944 -3.3447 34 1 7.1306 -1.5680 -3.4559 35 1 9.5533 -1.2453 -4.7454 36 1 7.9929 0.0304 0.4534 37 1 5.7481 0.9939 0.5393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402289599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:24 Heat of formation + Delta-G solvation = -87.397197 kcal Electronic energy + Delta-G solvation = -18180.815283 eV Core-core repulsion = 15308.596784 eV Total energy + Delta-G solvation = -2872.218498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43255 -37.69854 -36.18634 -33.37887 -32.67981 -31.27665 -29.46835 -29.01651 -26.32796 -24.82138 -22.34472 -21.64810 -20.75203 -20.19074 -17.49279 -17.23820 -16.34823 -15.38170 -15.30239 -15.09965 -14.48267 -13.99367 -13.71049 -13.30275 -12.94445 -12.64020 -12.42340 -12.22213 -12.10766 -11.78368 -11.73328 -11.59061 -11.21411 -11.17021 -10.93357 -10.86553 -10.69977 -10.47938 -10.08224 -9.81837 -9.65230 -9.31991 -9.03207 -7.65152 -7.00760 -6.70649 -4.27194 2.76187 2.93812 3.08617 3.13677 3.19177 3.88335 3.95579 4.41863 4.62510 4.83447 5.02232 5.08887 5.33249 5.42274 5.56100 5.66090 5.72983 5.83283 5.92538 6.00761 6.07049 6.11671 6.19684 6.26697 6.31677 6.44029 6.73415 6.97312 7.10914 7.19190 7.45114 7.53848 7.57680 7.78574 8.00112 8.20234 8.44883 8.65065 8.90070 8.97908 10.23725 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045463 B = 0.004470 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.737445 B = 6262.612051 C = 6455.847656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.155 4.155 3 C 0.113 3.887 4 H 0.104 0.896 5 O -0.554 6.554 6 C 0.059 3.941 7 H 0.066 0.934 8 C -0.173 4.173 9 O -0.318 6.318 10 C -0.003 4.003 11 C -0.122 4.122 12 C -0.131 4.131 13 C 0.087 3.913 14 C -0.463 4.463 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.803 5.803 18 Si 0.908 3.092 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.196 4.196 23 C -0.170 4.170 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.372 0.628 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.279 0.721 36 H 0.094 0.906 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 2.013 5.656 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.192 4.192 3 C 0.054 3.946 4 H 0.122 0.878 5 O -0.359 6.359 6 C 0.001 3.999 7 H 0.083 0.917 8 C -0.230 4.230 9 O -0.234 6.234 10 C -0.047 4.047 11 C -0.141 4.141 12 C -0.150 4.150 13 C 0.084 3.916 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.430 5.430 18 Si 0.733 3.267 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.216 4.216 23 C -0.188 4.188 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.219 0.781 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.117 2.435 4.840 11.476 hybrid contribution 1.273 -0.732 0.384 1.518 sum -8.844 1.703 5.225 10.412 Atomic orbital electron populations 1.21696 0.95448 1.01231 1.01969 1.22182 0.96469 0.97011 1.03577 1.21879 0.91901 0.93408 0.87408 0.87785 1.86596 1.76237 1.57494 1.15593 1.22772 0.95052 0.93606 0.88484 0.91659 1.22270 1.02264 0.96242 1.02254 1.85831 1.31474 1.71303 1.34790 1.18577 0.84454 1.04338 0.97291 1.19854 0.97281 1.01120 0.95869 1.21021 0.91121 1.02060 1.00828 1.17606 0.93066 0.89963 0.90926 1.19496 1.00049 1.36808 0.93010 0.90597 1.25867 0.98701 0.94369 0.95315 1.69820 1.38672 1.34592 0.99870 0.86270 0.80841 0.80236 0.79396 1.18535 1.19787 1.20075 1.20596 0.95858 1.04415 1.00721 1.20447 0.95780 1.05124 0.97471 0.92458 0.92849 0.92996 0.89805 0.91956 0.78063 0.91559 0.91674 0.92144 0.88532 0.85525 0.91029 0.88799 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.81 37.16 0.36 -1.19 16 2 C -0.15 -1.91 5.54 -26.73 -0.15 -2.06 16 3 C 0.11 1.47 2.76 -26.73 -0.07 1.40 16 4 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 5 O -0.55 -6.44 12.20 -35.23 -0.43 -6.87 16 6 C 0.06 0.91 1.99 -26.73 -0.05 0.86 16 7 H 0.07 1.01 6.28 -51.93 -0.33 0.68 16 8 C -0.17 -2.57 9.02 37.16 0.33 -2.24 16 9 O -0.32 -6.24 9.03 -18.70 -0.17 -6.41 16 10 C 0.00 -0.08 6.62 -38.78 -0.26 -0.34 16 11 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 12 C -0.13 -3.40 8.63 -39.25 -0.34 -3.74 16 13 C 0.09 2.30 5.57 -106.81 -0.59 1.71 16 14 C -0.46 -12.28 9.05 -37.83 -0.34 -12.63 16 15 H 0.08 1.94 7.89 -52.49 -0.41 1.52 16 16 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 17 N -0.80 -20.82 10.87 55.54 0.60 -20.21 16 18 Si 0.91 18.70 29.58 -169.99 -5.03 13.67 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 22 C -0.20 -4.79 9.74 -39.25 -0.38 -5.17 16 23 C -0.17 -3.77 8.15 -39.83 -0.32 -4.09 16 24 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.19 7.54 -51.93 -0.39 0.80 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.37 3.09 9.05 45.56 0.41 3.50 16 30 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 31 H 0.06 1.07 6.90 -51.93 -0.36 0.72 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 34 H 0.13 3.38 6.15 -52.49 -0.32 3.05 16 35 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.10 1.86 5.40 -52.48 -0.28 1.57 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -28.07 304.81 -7.31 -35.39 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.58 Total: 8.89 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -2.30 Total: -29.05 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.60 Total: -20.21 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.60 Total: -13.28 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.07 -7.31 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402289599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.010 kcal (2) G-P(sol) polarization free energy of solvation -28.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds