Wall clock time and date at job start Mon Mar 30 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47346 * 2 1 4 4 H 1.09001 * 109.47155 * 304.99426 * 3 2 1 5 5 O 1.42903 * 109.47380 * 64.99571 * 3 2 1 6 6 C 1.53002 * 109.47275 * 184.99741 * 3 2 1 7 7 H 1.09001 * 109.46772 * 299.99920 * 6 3 2 8 8 C 1.52998 * 109.47275 * 180.02562 * 6 3 2 9 9 O 1.42903 * 109.47055 * 59.99632 * 6 3 2 10 10 C 1.35667 * 116.99905 * 204.54541 * 9 6 3 11 11 C 1.39311 * 119.81717 * 174.97857 * 10 9 6 12 12 C 1.36448 * 120.18577 * 179.72299 * 11 10 9 13 13 C 1.40828 * 119.80944 * 0.28238 * 12 11 10 14 14 C 1.41218 * 120.17847 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00113 * 205.92015 * 14 13 12 16 16 C 1.39891 * 119.99566 * 25.92344 * 14 13 12 17 17 N 1.30885 * 120.00545 * 14.84045 * 16 14 13 18 18 Si 1.86801 * 119.99694 * 194.83755 * 16 14 13 19 19 H 1.48500 * 109.47271 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46828 * 119.99941 * 18 16 14 21 21 H 1.48496 * 109.47458 * 239.99791 * 18 16 14 22 22 C 1.40831 * 119.64606 * 359.97438 * 13 12 11 23 23 C 1.36442 * 119.80749 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47409 * 300.00666 * 1 2 3 25 25 H 1.09003 * 109.46273 * 60.00103 * 1 2 3 26 26 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47409 * 239.99334 * 2 1 3 28 28 H 1.09006 * 109.47168 * 119.99863 * 2 1 3 29 29 H 0.96707 * 113.99665 * 60.00042 * 5 3 2 30 30 H 1.09003 * 109.47257 * 59.99884 * 8 6 3 31 31 H 1.08997 * 109.47353 * 180.02562 * 8 6 3 32 32 H 1.09000 * 109.47312 * 300.00215 * 8 6 3 33 33 H 1.08003 * 119.90481 * 0.02562 * 11 10 9 34 34 H 1.07996 * 120.09226 * 180.29447 * 12 11 10 35 35 H 0.96993 * 120.00462 * 180.02562 * 17 16 14 36 36 H 1.07991 * 120.09589 * 179.97438 * 22 13 12 37 37 H 1.08006 * 119.90466 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6620 2.0815 1.2210 6 6 3.5649 1.4443 -0.1257 7 1 3.9994 0.9052 0.7162 8 6 4.0750 2.8867 -0.1250 9 8 3.9430 0.8053 -1.3467 10 6 5.1855 0.2631 -1.3990 11 6 5.5771 -0.4645 -2.5206 12 6 6.8270 -1.0083 -2.5836 13 6 7.7199 -0.8373 -1.5081 14 6 9.0155 -1.3962 -1.5653 15 1 9.5384 -1.6417 -0.6529 16 6 9.6214 -1.6319 -2.8040 17 7 9.1334 -1.0816 -3.8866 18 14 11.1271 -2.7321 -2.9128 19 1 11.4771 -3.2278 -1.5574 20 1 10.8341 -3.8857 -3.8008 21 1 12.2669 -1.9580 -3.4668 22 6 7.3142 -0.1049 -0.3757 23 6 6.0609 0.4323 -0.3286 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0141 1.6543 2.0139 30 1 3.7866 3.3737 0.8066 31 1 5.1613 2.8880 -0.2150 32 1 3.6404 3.4262 -0.9666 33 1 4.8911 -0.5944 -3.3447 34 1 7.1306 -1.5680 -3.4559 35 1 9.5533 -1.2453 -4.7454 36 1 7.9929 0.0304 0.4534 37 1 5.7481 0.9939 0.5393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402289599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:24 Heat of formation + Delta-G solvation = -104.099704 kcal Electronic energy + Delta-G solvation = -18181.539558 eV Core-core repulsion = 15308.596784 eV Total energy + Delta-G solvation = -2872.942773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93788 -39.09567 -37.73400 -35.20916 -33.65539 -32.64744 -31.25505 -30.86865 -27.46611 -26.59613 -23.85640 -22.83824 -22.45201 -21.70802 -19.29877 -18.86582 -17.50658 -17.01750 -16.59792 -16.33067 -15.93805 -15.71526 -15.21140 -14.82889 -14.27596 -14.04567 -13.97703 -13.66550 -13.43827 -13.24809 -13.16826 -12.81864 -12.71646 -12.58767 -12.51723 -12.35337 -11.84975 -11.80044 -11.62980 -11.55234 -11.16113 -10.95993 -10.67968 -9.55277 -8.88220 -8.57207 -6.23715 0.94981 1.02882 1.40059 1.50904 1.54887 2.23360 2.48559 2.74153 3.42096 3.69656 3.76796 3.88721 4.01241 4.21755 4.33040 4.33758 4.36786 4.58544 4.68353 4.75385 4.89314 4.89847 4.95426 5.07736 5.15824 5.20074 5.24893 5.28146 5.32525 5.41453 5.60551 5.66447 5.89488 6.06426 6.27430 6.57446 6.75706 6.82940 6.96165 7.10440 8.39223 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045463 B = 0.004470 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.737445 B = 6262.612051 C = 6455.847656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.153 4.153 3 C 0.126 3.874 4 H 0.099 0.901 5 O -0.553 6.553 6 C 0.051 3.949 7 H 0.071 0.929 8 C -0.169 4.169 9 O -0.324 6.324 10 C 0.010 3.990 11 C -0.136 4.136 12 C -0.150 4.150 13 C 0.053 3.947 14 C -0.499 4.499 15 H 0.075 0.925 16 C 0.032 3.968 17 N -0.836 5.836 18 Si 0.983 3.017 19 H -0.258 1.258 20 H -0.265 1.265 21 H -0.268 1.268 22 C -0.206 4.206 23 C -0.166 4.166 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.389 0.611 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.286 0.714 36 H 0.104 0.896 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 2.324 6.882 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.191 4.191 3 C 0.067 3.933 4 H 0.117 0.883 5 O -0.361 6.361 6 C -0.006 4.006 7 H 0.089 0.911 8 C -0.227 4.227 9 O -0.240 6.240 10 C -0.034 4.034 11 C -0.155 4.155 12 C -0.169 4.169 13 C 0.051 3.949 14 C -0.530 4.530 15 H 0.093 0.907 16 C -0.181 4.181 17 N -0.463 5.463 18 Si 0.804 3.196 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.193 1.193 22 C -0.226 4.226 23 C -0.185 4.185 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.239 0.761 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.908 2.758 6.089 12.793 hybrid contribution 1.343 -0.714 0.088 1.523 sum -9.565 2.044 6.178 11.569 Atomic orbital electron populations 1.21661 0.93997 1.01928 1.02313 1.22156 0.97738 0.96364 1.02868 1.21666 0.89714 0.93825 0.88116 0.88272 1.86585 1.76106 1.57602 1.15779 1.23145 0.97020 0.93605 0.86861 0.91115 1.22246 1.00942 0.95891 1.03588 1.85833 1.29733 1.71180 1.37256 1.18619 0.85487 1.02807 0.96493 1.20025 0.96939 1.01427 0.97061 1.20940 0.92137 1.03218 1.00619 1.17949 0.93673 0.91209 0.92039 1.19742 1.00668 1.38743 0.93815 0.90715 1.26715 1.01726 0.95162 0.94475 1.69880 1.40316 1.35596 1.00556 0.85152 0.76852 0.78175 0.79455 1.18195 1.18996 1.19255 1.20828 0.97026 1.04269 1.00463 1.20709 0.94840 1.04512 0.98393 0.91671 0.92916 0.92192 0.92026 0.91175 0.76111 0.89045 0.93488 0.92291 0.87329 0.87139 0.90329 0.87810 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.81 71.98 0.71 -1.97 16 2 C -0.15 -3.48 5.54 30.59 0.17 -3.31 16 3 C 0.13 2.97 2.76 30.59 0.08 3.06 16 4 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 5 O -0.55 -10.97 12.20 -148.98 -1.82 -12.79 16 6 C 0.05 1.46 1.99 30.59 0.06 1.52 16 7 H 0.07 1.98 6.28 -2.39 -0.01 1.96 16 8 C -0.17 -4.64 9.02 71.98 0.65 -3.99 16 9 O -0.32 -12.30 9.03 -89.83 -0.81 -13.11 16 10 C 0.01 0.44 6.62 22.79 0.15 0.59 16 11 C -0.14 -6.58 9.92 22.11 0.22 -6.36 16 12 C -0.15 -8.03 8.63 22.49 0.19 -7.83 16 13 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 14 C -0.50 -27.18 9.05 23.40 0.21 -26.97 16 15 H 0.07 3.91 7.89 -2.92 -0.02 3.89 16 16 C 0.03 1.65 5.19 85.23 0.44 2.09 16 17 N -0.84 -44.44 10.87 21.82 0.24 -44.20 16 18 Si 0.98 38.63 29.58 68.60 2.03 40.66 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 C -0.21 -10.10 9.74 22.48 0.22 -9.88 16 23 C -0.17 -7.21 8.15 22.11 0.18 -7.03 16 24 H 0.06 1.14 7.82 -2.39 -0.02 1.12 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.68 7.54 -2.39 -0.02 1.67 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 29 H 0.39 4.97 9.05 -74.05 -0.67 4.30 16 30 H 0.09 2.04 7.68 -2.39 -0.02 2.02 16 31 H 0.05 1.45 6.90 -2.39 -0.02 1.44 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 34 H 0.11 6.18 6.15 -2.91 -0.02 6.16 16 35 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 36 H 0.10 4.74 8.06 -2.92 -0.02 4.72 16 37 H 0.13 4.63 5.40 -2.91 -0.02 4.61 16 Total: -1.00 -60.66 304.81 3.20 -57.46 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.39 Total: 29.28 kcal Atomic # 6 Polarization: -60.47 SS G_CDS: 3.17 Total: -57.30 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.24 Total: -44.20 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -2.63 Total: -25.90 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -60.66 3.20 -57.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402289599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.644 kcal (2) G-P(sol) polarization free energy of solvation -60.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds