Wall clock time and date at job start Mon Mar 30 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47224 * 2 1 4 4 O 1.42897 * 109.47095 * 119.99647 * 2 1 3 5 5 C 1.53002 * 109.47015 * 239.99635 * 2 1 3 6 6 C 1.52994 * 109.46808 * 175.00328 * 5 2 1 7 7 H 1.09002 * 109.47150 * 304.99807 * 6 5 2 8 8 C 1.53007 * 109.46869 * 185.00277 * 6 5 2 9 9 O 1.42890 * 109.47880 * 64.99866 * 6 5 2 10 10 C 1.35669 * 117.00799 * 203.27411 * 9 6 5 11 11 C 1.39313 * 119.82144 * 175.02487 * 10 9 6 12 12 C 1.36444 * 120.18322 * 179.76102 * 11 10 9 13 13 C 1.40826 * 119.81377 * 0.51498 * 12 11 10 14 14 C 1.41210 * 120.18219 * 179.72064 * 13 12 11 15 15 H 1.08006 * 120.00224 * 208.88087 * 14 13 12 16 16 C 1.39891 * 119.99942 * 28.87562 * 14 13 12 17 17 N 1.30885 * 120.00098 * 11.05491 * 16 14 13 18 18 Si 1.86807 * 120.00116 * 191.05192 * 16 14 13 19 19 H 1.48496 * 109.46783 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47162 * 120.00079 * 18 16 14 21 21 H 1.48501 * 109.47023 * 240.00287 * 18 16 14 22 22 C 1.40837 * 119.64097 * 359.73746 * 13 12 11 23 23 C 1.36442 * 119.81018 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47124 * 60.00274 * 1 2 3 25 25 H 1.08995 * 109.46707 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46866 * 300.00089 * 1 2 3 27 27 H 0.96703 * 114.00288 * 300.00064 * 4 2 1 28 28 H 1.09003 * 109.46920 * 54.99854 * 5 2 1 29 29 H 1.08998 * 109.46703 * 295.00149 * 5 2 1 30 30 H 1.09000 * 109.46999 * 179.97438 * 8 6 5 31 31 H 1.08993 * 109.46840 * 299.99532 * 8 6 5 32 32 H 1.08998 * 109.47112 * 59.99651 * 8 6 5 33 33 H 1.08000 * 119.90491 * 0.02562 * 11 10 9 34 34 H 1.08000 * 120.09016 * 180.24802 * 12 11 10 35 35 H 0.96992 * 120.00147 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.09573 * 179.97438 * 22 13 12 37 37 H 1.08003 * 119.90761 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5648 -0.6134 -1.3136 7 1 3.8571 0.4357 -1.2677 8 6 4.0645 -1.2252 -2.6240 9 8 4.1393 -1.3165 -0.2102 10 6 5.3857 -0.9448 0.1755 11 6 5.9603 -1.5181 1.3078 12 6 7.2154 -1.1534 1.6996 13 6 7.9258 -0.1866 0.9621 14 6 9.2229 0.2010 1.3640 15 1 9.5822 1.1953 1.1432 16 6 10.0424 -0.7029 2.0483 17 7 9.7021 -1.9643 2.1277 18 14 11.6227 -0.1098 2.8487 19 1 11.7777 1.3487 2.6168 20 1 11.5680 -0.3753 4.3087 21 1 12.7782 -0.8311 2.2572 22 6 7.3356 0.3919 -0.1783 23 6 6.0816 0.0125 -0.5593 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.7211 -0.2700 1.9980 28 1 1.6054 -0.2619 -2.1370 29 1 1.7516 -1.7716 -1.2054 30 1 5.1508 -1.1479 -2.6701 31 1 3.7723 -2.2742 -2.6698 32 1 3.6264 -0.6889 -3.4657 33 1 5.4125 -2.2564 1.8745 34 1 7.6610 -1.6017 2.5753 35 1 10.2701 -2.5909 2.6025 36 1 7.8737 1.1343 -0.7490 37 1 5.6273 0.4554 -1.4333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402312201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:50 Heat of formation + Delta-G solvation = -82.922344 kcal Electronic energy + Delta-G solvation = -18277.094589 eV Core-core repulsion = 15405.070135 eV Total energy + Delta-G solvation = -2872.024454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.08867 -37.42473 -36.20036 -33.44121 -32.63202 -30.65589 -29.38150 -28.87437 -26.76974 -24.74289 -22.19629 -21.35410 -20.56355 -19.79787 -17.53236 -17.21830 -16.62110 -15.19186 -14.98188 -14.84891 -14.01176 -13.84484 -13.78775 -13.17338 -12.74458 -12.53728 -12.42625 -12.16252 -12.04006 -11.90374 -11.63664 -11.50205 -11.42267 -11.09901 -10.83822 -10.65942 -10.46696 -10.24471 -9.81051 -9.68144 -9.66163 -9.17237 -8.94910 -7.51940 -6.81215 -6.56651 -4.16547 2.87439 3.05454 3.14667 3.19884 3.29060 4.04270 4.20830 4.47127 4.72259 4.77196 4.99720 5.19631 5.40044 5.44862 5.52535 5.62164 5.76098 5.83230 5.88481 5.92596 5.99204 6.15598 6.18564 6.25604 6.38992 6.50589 6.88700 7.09196 7.23911 7.32168 7.60531 7.69057 7.91834 7.93006 8.12576 8.33169 8.62097 8.80820 9.02242 9.11934 10.38116 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.041929 B = 0.004729 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.632673 B = 5919.802739 C = 6168.875312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.102 3.898 3 H 0.049 0.951 4 O -0.540 6.540 5 C -0.109 4.109 6 C 0.091 3.909 7 H 0.061 0.939 8 C -0.180 4.180 9 O -0.300 6.300 10 C 0.015 3.985 11 C -0.126 4.126 12 C -0.124 4.124 13 C 0.082 3.918 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.811 5.811 18 Si 0.908 3.092 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.192 4.192 23 C -0.181 4.181 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.367 0.633 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.277 0.723 36 H 0.092 0.908 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 3.011 -3.966 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.067 0.933 4 O -0.344 6.344 5 C -0.147 4.147 6 C 0.033 3.967 7 H 0.079 0.921 8 C -0.237 4.237 9 O -0.215 6.215 10 C -0.029 4.029 11 C -0.145 4.145 12 C -0.144 4.144 13 C 0.080 3.920 14 C -0.498 4.498 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.439 5.439 18 Si 0.733 3.267 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.202 1.202 22 C -0.212 4.212 23 C -0.199 4.199 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.212 0.788 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.539 2.252 -4.254 13.431 hybrid contribution 0.579 0.744 0.479 1.057 sum -11.960 2.996 -3.776 12.895 Atomic orbital electron populations 1.22548 0.97164 1.02573 1.02012 1.21704 0.91725 0.95202 0.87130 0.93287 1.86819 1.76577 1.56172 1.14809 1.21730 0.94452 1.02366 0.96105 1.21987 0.92105 0.96125 0.86481 0.92128 1.22393 1.02775 1.01614 0.96962 1.86033 1.29000 1.58582 1.47854 1.18665 0.85214 1.00839 0.98183 1.19863 0.96371 1.02156 0.96099 1.21022 0.91943 1.00652 1.00738 1.17579 0.92884 0.91654 0.89900 1.19445 0.98311 0.99562 1.32465 0.90840 1.25821 0.99586 0.94329 0.94505 1.69812 1.37336 1.02679 1.34075 0.86277 0.81187 0.79977 0.79278 1.18684 1.19942 1.20189 1.20619 0.96018 1.05620 0.98904 1.20468 0.97115 1.01520 1.00831 0.91991 0.91902 0.92573 0.78785 0.89640 0.90423 0.91438 0.92099 0.92352 0.88557 0.85689 0.91263 0.88980 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 9.54 37.16 0.35 -1.38 16 2 C 0.10 1.27 3.58 -26.73 -0.10 1.17 16 3 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 4 O -0.54 -8.17 11.77 -54.84 -0.65 -8.81 16 5 C -0.11 -1.42 4.71 -26.73 -0.13 -1.54 16 6 C 0.09 1.48 2.23 -26.73 -0.06 1.43 16 7 H 0.06 1.01 6.36 -51.93 -0.33 0.68 16 8 C -0.18 -2.67 9.13 37.16 0.34 -2.33 16 9 O -0.30 -6.32 8.25 -38.32 -0.32 -6.64 16 10 C 0.01 0.35 6.61 -38.78 -0.26 0.09 16 11 C -0.13 -3.17 9.92 -39.83 -0.40 -3.57 16 12 C -0.12 -3.35 8.60 -39.25 -0.34 -3.69 16 13 C 0.08 2.25 5.55 -106.81 -0.59 1.66 16 14 C -0.47 -12.78 9.05 -37.84 -0.34 -13.12 16 15 H 0.07 1.94 7.87 -52.48 -0.41 1.53 16 16 C 0.07 1.88 5.24 -17.34 -0.09 1.79 16 17 N -0.81 -21.78 10.86 55.54 0.60 -21.18 16 18 Si 0.91 19.35 29.57 -169.99 -5.03 14.33 16 19 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 C -0.19 -4.85 9.74 -39.25 -0.38 -5.23 16 23 C -0.18 -4.19 8.10 -39.83 -0.32 -4.51 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.37 4.04 9.08 45.56 0.41 4.46 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.13 6.76 -51.93 -0.35 0.78 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 34 H 0.13 3.46 6.23 -52.49 -0.33 3.14 16 35 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 36 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.09 1.92 5.35 -52.48 -0.28 1.64 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -30.52 304.97 -7.75 -38.27 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.65 Total: 8.67 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -2.31 Total: -29.24 kcal Atomic # 7 Polarization: -21.78 SS G_CDS: 0.60 Total: -21.18 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.96 Total: -15.45 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.52 -7.75 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402312201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.655 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds