Wall clock time and date at job start Mon Mar 30 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47224 * 2 1 4 4 O 1.42897 * 109.47095 * 119.99647 * 2 1 3 5 5 C 1.53002 * 109.47015 * 239.99635 * 2 1 3 6 6 C 1.52994 * 109.46808 * 175.00328 * 5 2 1 7 7 H 1.09002 * 109.47150 * 304.99807 * 6 5 2 8 8 C 1.53007 * 109.46869 * 185.00277 * 6 5 2 9 9 O 1.42890 * 109.47880 * 64.99866 * 6 5 2 10 10 C 1.35669 * 117.00799 * 203.27411 * 9 6 5 11 11 C 1.39313 * 119.82144 * 175.02487 * 10 9 6 12 12 C 1.36444 * 120.18322 * 179.76102 * 11 10 9 13 13 C 1.40826 * 119.81377 * 0.51498 * 12 11 10 14 14 C 1.41210 * 120.18219 * 179.72064 * 13 12 11 15 15 H 1.08006 * 120.00224 * 208.88087 * 14 13 12 16 16 C 1.39891 * 119.99942 * 28.87562 * 14 13 12 17 17 N 1.30885 * 120.00098 * 11.05491 * 16 14 13 18 18 Si 1.86807 * 120.00116 * 191.05192 * 16 14 13 19 19 H 1.48496 * 109.46783 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47162 * 120.00079 * 18 16 14 21 21 H 1.48501 * 109.47023 * 240.00287 * 18 16 14 22 22 C 1.40837 * 119.64097 * 359.73746 * 13 12 11 23 23 C 1.36442 * 119.81018 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47124 * 60.00274 * 1 2 3 25 25 H 1.08995 * 109.46707 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46866 * 300.00089 * 1 2 3 27 27 H 0.96703 * 114.00288 * 300.00064 * 4 2 1 28 28 H 1.09003 * 109.46920 * 54.99854 * 5 2 1 29 29 H 1.08998 * 109.46703 * 295.00149 * 5 2 1 30 30 H 1.09000 * 109.46999 * 179.97438 * 8 6 5 31 31 H 1.08993 * 109.46840 * 299.99532 * 8 6 5 32 32 H 1.08998 * 109.47112 * 59.99651 * 8 6 5 33 33 H 1.08000 * 119.90491 * 0.02562 * 11 10 9 34 34 H 1.08000 * 120.09016 * 180.24802 * 12 11 10 35 35 H 0.96992 * 120.00147 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.09573 * 179.97438 * 22 13 12 37 37 H 1.08003 * 119.90761 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5648 -0.6134 -1.3136 7 1 3.8571 0.4357 -1.2677 8 6 4.0645 -1.2252 -2.6240 9 8 4.1393 -1.3165 -0.2102 10 6 5.3857 -0.9448 0.1755 11 6 5.9603 -1.5181 1.3078 12 6 7.2154 -1.1534 1.6996 13 6 7.9258 -0.1866 0.9621 14 6 9.2229 0.2010 1.3640 15 1 9.5822 1.1953 1.1432 16 6 10.0424 -0.7029 2.0483 17 7 9.7021 -1.9643 2.1277 18 14 11.6227 -0.1098 2.8487 19 1 11.7777 1.3487 2.6168 20 1 11.5680 -0.3753 4.3087 21 1 12.7782 -0.8311 2.2572 22 6 7.3356 0.3919 -0.1783 23 6 6.0816 0.0125 -0.5593 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.7211 -0.2700 1.9980 28 1 1.6054 -0.2619 -2.1370 29 1 1.7516 -1.7716 -1.2054 30 1 5.1508 -1.1479 -2.6701 31 1 3.7723 -2.2742 -2.6698 32 1 3.6264 -0.6889 -3.4657 33 1 5.4125 -2.2564 1.8745 34 1 7.6610 -1.6017 2.5753 35 1 10.2701 -2.5909 2.6025 36 1 7.8737 1.1343 -0.7490 37 1 5.6273 0.4554 -1.4333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402312201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:50 Heat of formation + Delta-G solvation = -101.342280 kcal Electronic energy + Delta-G solvation = -18277.893337 eV Core-core repulsion = 15405.070135 eV Total energy + Delta-G solvation = -2872.823202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71615 -38.80243 -37.76219 -35.24437 -34.04512 -31.89256 -31.13981 -30.80917 -27.78833 -26.65977 -23.78359 -22.71118 -22.24934 -21.31110 -19.23324 -18.86424 -17.95529 -17.01052 -16.48973 -16.10543 -15.69948 -15.26509 -15.14123 -14.82243 -14.22792 -14.06973 -13.75206 -13.55674 -13.37929 -13.23826 -13.07139 -12.94024 -12.77713 -12.60805 -12.47897 -12.30372 -11.95754 -11.62035 -11.57035 -11.24116 -11.05028 -10.85780 -10.70566 -9.50829 -8.76332 -8.50545 -6.20709 1.00153 1.06817 1.40318 1.52782 1.55360 2.25805 2.76578 2.80228 3.51319 3.70516 3.74605 4.04399 4.15904 4.29454 4.36723 4.38110 4.44638 4.53189 4.73301 4.73476 4.89669 4.96082 4.96867 5.07612 5.10353 5.21040 5.26665 5.30309 5.33917 5.38078 5.65913 5.72201 5.95063 6.10913 6.32246 6.63814 6.91198 7.00616 7.04333 7.21008 8.46110 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.041929 B = 0.004729 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.632673 B = 5919.802739 C = 6168.875312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.049 0.951 4 O -0.574 6.574 5 C -0.106 4.106 6 C 0.077 3.923 7 H 0.060 0.940 8 C -0.176 4.176 9 O -0.311 6.311 10 C 0.027 3.973 11 C -0.141 4.141 12 C -0.141 4.141 13 C 0.048 3.952 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.029 3.971 17 N -0.845 5.845 18 Si 0.984 3.016 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.201 4.201 23 C -0.176 4.176 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.380 0.620 28 H 0.125 0.875 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.284 0.716 36 H 0.103 0.897 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.910 3.937 -5.095 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.034 3.966 3 H 0.067 0.933 4 O -0.380 6.380 5 C -0.143 4.143 6 C 0.021 3.979 7 H 0.078 0.922 8 C -0.234 4.234 9 O -0.226 6.226 10 C -0.017 4.017 11 C -0.160 4.160 12 C -0.161 4.161 13 C 0.046 3.954 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.183 4.183 17 N -0.473 5.473 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.191 1.191 21 H -0.193 1.193 22 C -0.220 4.220 23 C -0.195 4.195 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.227 0.773 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.692 3.183 -5.395 15.056 hybrid contribution 0.745 0.442 0.728 1.132 sum -12.947 3.625 -4.666 14.231 Atomic orbital electron populations 1.22436 0.94565 1.02745 1.03532 1.21896 0.93812 0.94765 0.86080 0.93288 1.86766 1.77524 1.57399 1.16354 1.21837 0.91764 1.02521 0.98129 1.22453 0.94240 0.95658 0.85585 0.92217 1.22371 1.01407 1.02169 0.97414 1.86038 1.27449 1.59397 1.49750 1.18712 0.86201 0.99666 0.97160 1.19990 0.96109 1.02733 0.97190 1.20917 0.92835 1.01550 1.00800 1.17917 0.93654 0.92692 0.91107 1.19698 0.99023 1.00065 1.34530 0.90871 1.26709 1.03042 0.94121 0.94382 1.69886 1.38958 1.03838 1.34646 0.85126 0.76527 0.79487 0.78293 1.18210 1.19081 1.19300 1.20862 0.96947 1.05740 0.98488 1.20728 0.96327 1.00957 1.01480 0.90001 0.92351 0.91587 0.77267 0.85737 0.91183 0.93734 0.92115 0.88548 0.87970 0.87401 0.90575 0.87848 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 9.54 71.98 0.69 -2.08 16 2 C 0.09 2.12 3.58 30.60 0.11 2.23 16 3 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 4 O -0.57 -16.86 11.77 -130.23 -1.53 -18.39 16 5 C -0.11 -2.43 4.71 30.59 0.14 -2.28 16 6 C 0.08 2.36 2.23 30.59 0.07 2.42 16 7 H 0.06 1.84 6.36 -2.39 -0.02 1.83 16 8 C -0.18 -4.76 9.13 71.98 0.66 -4.11 16 9 O -0.31 -12.86 8.25 -71.11 -0.59 -13.45 16 10 C 0.03 1.29 6.61 22.79 0.15 1.44 16 11 C -0.14 -7.30 9.92 22.11 0.22 -7.08 16 12 C -0.14 -7.94 8.60 22.48 0.19 -7.75 16 13 C 0.05 2.73 5.55 -21.28 -0.12 2.61 16 14 C -0.50 -28.26 9.05 23.40 0.21 -28.04 16 15 H 0.07 3.96 7.87 -2.91 -0.02 3.93 16 16 C 0.03 1.54 5.24 85.23 0.45 1.98 16 17 N -0.84 -46.59 10.86 21.82 0.24 -46.35 16 18 Si 0.98 40.02 29.57 68.60 2.03 42.05 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 C -0.20 -10.24 9.74 22.49 0.22 -10.02 16 23 C -0.18 -8.07 8.10 22.11 0.18 -7.89 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.38 8.18 9.08 -74.06 -0.67 7.51 16 28 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.40 6.76 -2.39 -0.02 1.39 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 34 H 0.11 6.31 6.23 -2.91 -0.02 6.29 16 35 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 36 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.13 4.88 5.35 -2.91 -0.02 4.87 16 Total: -1.00 -67.30 304.97 3.70 -63.60 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.39 Total: 31.12 kcal Atomic # 6 Polarization: -61.73 SS G_CDS: 3.17 Total: -58.57 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.24 Total: -46.35 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -2.12 Total: -31.84 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -67.30 3.70 -63.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402312201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.747 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds