Wall clock time and date at job start Mon Mar 30 2020 06:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47482 * 2 1 4 4 O 1.42905 * 109.46890 * 120.00472 * 2 1 3 5 5 C 1.50699 * 109.46943 * 240.00384 * 2 1 3 6 6 C 1.38267 * 119.94655 * 100.00423 * 5 2 1 7 7 C 1.38139 * 120.05429 * 180.02562 * 6 5 2 8 8 C 1.38735 * 119.95008 * 359.97438 * 7 6 5 9 9 O 1.35903 * 120.06002 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99948 * 185.35906 * 9 8 7 11 11 H 1.08996 * 109.47345 * 35.35406 * 10 9 8 12 12 C 1.52999 * 109.46940 * 275.34704 * 10 9 8 13 13 C 1.53000 * 109.46882 * 155.34996 * 10 9 8 14 14 C 1.50693 * 109.47378 * 295.00049 * 13 10 9 15 15 H 1.08000 * 120.00363 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00133 * 180.02562 * 14 13 10 17 17 N 1.31510 * 120.00055 * 359.72146 * 16 14 13 18 18 Si 1.86802 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47004 * 179.72162 * 18 16 14 20 20 H 1.48497 * 109.46793 * 299.71963 * 18 16 14 21 21 H 1.48497 * 109.47323 * 59.71846 * 18 16 14 22 22 C 1.38734 * 119.88369 * 0.28426 * 8 7 6 23 23 C 1.38144 * 119.94278 * 359.46141 * 22 8 7 24 24 H 1.09001 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47129 * 300.00267 * 1 2 3 26 26 H 1.09012 * 109.46740 * 59.99610 * 1 2 3 27 27 H 0.96704 * 113.99657 * 59.99875 * 4 2 1 28 28 H 1.07995 * 119.96760 * 359.97240 * 6 5 2 29 29 H 1.08006 * 120.02865 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46822 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47675 * 300.00500 * 12 10 9 32 32 H 1.09009 * 109.46915 * 60.00496 * 12 10 9 33 33 H 1.09004 * 109.47170 * 174.99606 * 13 10 9 34 34 H 1.09007 * 109.46904 * 55.00019 * 13 10 9 35 35 H 0.97001 * 119.99718 * 0.27157 * 17 16 14 36 36 H 1.08005 * 120.02492 * 179.71624 * 22 8 7 37 37 H 1.08005 * 119.96986 * 180.23485 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 2.0323 -0.7103 -1.2305 6 6 2.4586 0.0208 -2.3239 7 6 2.9189 -0.6280 -3.4532 8 6 2.9539 -2.0144 -3.4896 9 8 3.4068 -2.6551 -4.5993 10 6 3.3050 -4.0803 -4.6125 11 1 2.3946 -4.3844 -4.0961 12 6 4.5192 -4.6849 -3.9047 13 6 3.2597 -4.5749 -6.0597 14 6 1.9996 -4.0791 -6.7208 15 1 1.3007 -3.4722 -6.1645 16 6 1.7385 -4.4010 -8.0359 17 7 2.5917 -5.1362 -8.7148 18 14 0.1768 -3.7857 -8.8557 19 1 0.1358 -4.2607 -10.2620 20 1 -1.0051 -4.3063 -8.1227 21 1 0.1582 -2.3010 -8.8339 22 6 2.5205 -2.7458 -2.3933 23 6 2.0660 -2.0922 -1.2643 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8901 27 1 1.7209 -1.5954 1.2328 28 1 2.4308 1.1001 -2.2952 29 1 3.2514 -0.0564 -4.3072 30 1 4.4413 -5.7721 -3.9144 31 1 5.4296 -4.3809 -4.4211 32 1 4.5514 -4.3326 -2.8736 33 1 3.2717 -5.6648 -6.0717 34 1 4.1271 -4.1961 -6.6004 35 1 3.4028 -5.4553 -8.2892 36 1 2.5424 -3.8253 -2.4209 37 1 1.7321 -2.6611 -0.4091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:57 Heat of formation + Delta-G solvation = -85.965508 kcal Electronic energy + Delta-G solvation = -18067.253081 eV Core-core repulsion = 15195.096666 eV Total energy + Delta-G solvation = -2872.156415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06495 -38.39542 -36.37402 -33.80497 -31.89451 -31.42166 -30.59148 -28.48154 -27.13728 -23.81448 -23.24173 -22.84123 -21.06576 -20.13251 -18.08233 -17.01096 -16.89015 -15.95186 -15.08855 -14.96359 -14.50680 -14.32908 -13.73439 -13.51598 -13.40462 -13.24286 -12.82597 -12.71147 -12.41497 -12.15941 -11.85420 -11.60747 -11.54535 -11.17889 -11.05857 -10.69219 -10.55968 -10.32226 -10.16629 -10.06649 -9.70785 -8.84182 -8.60084 -8.36771 -7.75116 -6.38701 -4.07324 1.50273 1.59074 3.43370 3.45984 3.64328 3.78398 3.90574 4.32765 4.53370 4.63458 4.84321 4.98902 5.06214 5.14376 5.39158 5.40197 5.50114 5.52825 5.57517 5.62564 5.69364 5.84817 5.88469 5.95104 6.08176 6.15251 6.40725 6.41151 6.52849 6.65859 6.67353 6.93405 7.17065 7.28561 7.43754 8.01596 8.15099 8.42687 8.84426 9.62743 11.02065 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.005074 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.747308 B = 5516.646338 C = 6113.573936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.151 3.849 3 H 0.102 0.898 4 O -0.561 6.561 5 C -0.175 4.175 6 C -0.071 4.071 7 C -0.159 4.159 8 C 0.153 3.847 9 O -0.290 6.290 10 C 0.094 3.906 11 H 0.064 0.936 12 C -0.179 4.179 13 C 0.012 3.988 14 C -0.595 4.595 15 H 0.049 0.951 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 1.068 2.932 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.287 1.287 22 C -0.212 4.212 23 C -0.072 4.072 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.373 0.627 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.130 0.870 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 7.362 16.296 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 H 0.120 0.880 4 O -0.367 6.367 5 C -0.176 4.176 6 C -0.089 4.089 7 C -0.178 4.178 8 C 0.106 3.894 9 O -0.202 6.202 10 C 0.038 3.962 11 H 0.082 0.918 12 C -0.236 4.236 13 C -0.025 4.025 14 C -0.633 4.633 15 H 0.067 0.933 16 C -0.188 4.188 17 N -0.549 5.549 18 Si 0.896 3.104 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.214 1.214 22 C -0.231 4.231 23 C -0.090 4.090 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.220 0.780 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.124 7.986 14.785 16.938 hybrid contribution 0.527 -0.744 1.370 1.646 sum -1.597 7.242 16.155 17.776 Atomic orbital electron populations 1.22502 0.95857 1.02797 1.02621 1.20670 0.92652 0.95661 0.81741 0.87992 1.86586 1.77472 1.29079 1.43605 1.20257 1.05821 0.94202 0.97295 1.20672 0.96930 0.99262 0.92062 1.20460 1.05857 0.91725 0.99741 1.19262 0.91443 0.92309 0.86432 1.86275 1.76110 1.22559 1.35302 1.22671 0.96296 0.76523 1.00708 0.91827 1.22436 0.99821 1.01331 1.00053 1.19378 0.98714 0.95780 0.88621 1.21928 1.06087 1.35761 0.99551 0.93273 1.25823 1.03301 0.95074 0.94553 1.70801 1.11317 1.33301 1.39497 0.83551 0.74546 0.76070 0.76197 1.20714 1.21476 1.21386 1.21320 1.06833 1.00539 0.94402 1.20522 0.97949 0.93484 0.97070 0.92209 0.91849 0.91295 0.77968 0.85795 0.85212 0.91388 0.91916 0.93037 0.95368 0.96197 0.92204 0.85205 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.51 37.16 0.35 -1.26 16 2 C 0.15 1.58 3.83 -27.88 -0.11 1.47 16 3 H 0.10 0.99 8.00 -51.93 -0.42 0.58 16 4 O -0.56 -6.11 13.19 -35.23 -0.46 -6.58 16 5 C -0.18 -2.23 4.97 -104.60 -0.52 -2.75 16 6 C -0.07 -0.95 9.66 -39.61 -0.38 -1.34 16 7 C -0.16 -2.58 9.99 -39.43 -0.39 -2.97 16 8 C 0.15 2.81 6.60 -39.21 -0.26 2.55 16 9 O -0.29 -6.27 9.55 -19.44 -0.19 -6.45 16 10 C 0.09 1.95 2.17 -26.73 -0.06 1.90 16 11 H 0.06 1.30 6.31 -51.93 -0.33 0.97 16 12 C -0.18 -3.03 9.17 37.16 0.34 -2.69 16 13 C 0.01 0.30 3.99 -27.89 -0.11 0.19 16 14 C -0.60 -17.03 8.88 -34.44 -0.31 -17.34 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 17 N -0.91 -27.91 13.65 55.43 0.76 -27.16 16 18 Si 1.07 25.61 29.90 -169.99 -5.08 20.52 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.21 -3.39 8.23 -39.43 -0.32 -3.71 16 23 C -0.07 -0.96 9.31 -39.60 -0.37 -1.33 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.37 2.91 7.50 45.56 0.34 3.26 16 28 H 0.12 1.30 8.03 -52.49 -0.42 0.88 16 29 H 0.13 2.02 8.06 -52.48 -0.42 1.59 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.78 6.90 -51.92 -0.36 0.42 16 33 H 0.03 0.72 8.01 -51.93 -0.42 0.31 16 34 H 0.02 0.54 8.01 -51.93 -0.42 0.12 16 35 H 0.27 8.09 7.22 -40.82 -0.29 7.80 16 36 H 0.13 1.99 5.43 -52.48 -0.28 1.71 16 37 H 0.12 1.17 6.78 -52.48 -0.36 0.82 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -32.29 308.10 -7.26 -39.55 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.69 Total: 2.38 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -2.23 Total: -26.91 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.76 Total: -27.16 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.65 Total: -13.03 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.29 -7.26 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.415 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds