Wall clock time and date at job start Mon Mar 30 2020 06:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47482 * 2 1 4 4 O 1.42905 * 109.46890 * 120.00472 * 2 1 3 5 5 C 1.50699 * 109.46943 * 240.00384 * 2 1 3 6 6 C 1.38267 * 119.94655 * 100.00423 * 5 2 1 7 7 C 1.38139 * 120.05429 * 180.02562 * 6 5 2 8 8 C 1.38735 * 119.95008 * 359.97438 * 7 6 5 9 9 O 1.35903 * 120.06002 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99948 * 185.35906 * 9 8 7 11 11 H 1.08996 * 109.47345 * 35.35406 * 10 9 8 12 12 C 1.52999 * 109.46940 * 275.34704 * 10 9 8 13 13 C 1.53000 * 109.46882 * 155.34996 * 10 9 8 14 14 C 1.50693 * 109.47378 * 295.00049 * 13 10 9 15 15 H 1.08000 * 120.00363 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00133 * 180.02562 * 14 13 10 17 17 N 1.31510 * 120.00055 * 359.72146 * 16 14 13 18 18 Si 1.86802 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47004 * 179.72162 * 18 16 14 20 20 H 1.48497 * 109.46793 * 299.71963 * 18 16 14 21 21 H 1.48497 * 109.47323 * 59.71846 * 18 16 14 22 22 C 1.38734 * 119.88369 * 0.28426 * 8 7 6 23 23 C 1.38144 * 119.94278 * 359.46141 * 22 8 7 24 24 H 1.09001 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47129 * 300.00267 * 1 2 3 26 26 H 1.09012 * 109.46740 * 59.99610 * 1 2 3 27 27 H 0.96704 * 113.99657 * 59.99875 * 4 2 1 28 28 H 1.07995 * 119.96760 * 359.97240 * 6 5 2 29 29 H 1.08006 * 120.02865 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46822 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47675 * 300.00500 * 12 10 9 32 32 H 1.09009 * 109.46915 * 60.00496 * 12 10 9 33 33 H 1.09004 * 109.47170 * 174.99606 * 13 10 9 34 34 H 1.09007 * 109.46904 * 55.00019 * 13 10 9 35 35 H 0.97001 * 119.99718 * 0.27157 * 17 16 14 36 36 H 1.08005 * 120.02492 * 179.71624 * 22 8 7 37 37 H 1.08005 * 119.96986 * 180.23485 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 2.0323 -0.7103 -1.2305 6 6 2.4586 0.0208 -2.3239 7 6 2.9189 -0.6280 -3.4532 8 6 2.9539 -2.0144 -3.4896 9 8 3.4068 -2.6551 -4.5993 10 6 3.3050 -4.0803 -4.6125 11 1 2.3946 -4.3844 -4.0961 12 6 4.5192 -4.6849 -3.9047 13 6 3.2597 -4.5749 -6.0597 14 6 1.9996 -4.0791 -6.7208 15 1 1.3007 -3.4722 -6.1645 16 6 1.7385 -4.4010 -8.0359 17 7 2.5917 -5.1362 -8.7148 18 14 0.1768 -3.7857 -8.8557 19 1 0.1358 -4.2607 -10.2620 20 1 -1.0051 -4.3063 -8.1227 21 1 0.1582 -2.3010 -8.8339 22 6 2.5205 -2.7458 -2.3933 23 6 2.0660 -2.0922 -1.2643 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8901 27 1 1.7209 -1.5954 1.2328 28 1 2.4308 1.1001 -2.2952 29 1 3.2514 -0.0564 -4.3072 30 1 4.4413 -5.7721 -3.9144 31 1 5.4296 -4.3809 -4.4211 32 1 4.5514 -4.3326 -2.8736 33 1 3.2717 -5.6648 -6.0717 34 1 4.1271 -4.1961 -6.6004 35 1 3.4028 -5.4553 -8.2892 36 1 2.5424 -3.8253 -2.4209 37 1 1.7321 -2.6611 -0.4091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:57 Heat of formation + Delta-G solvation = -107.020653 kcal Electronic energy + Delta-G solvation = -18068.166101 eV Core-core repulsion = 15195.096666 eV Total energy + Delta-G solvation = -2873.069435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32465 -39.56432 -37.45574 -35.78588 -33.52782 -32.45106 -31.77998 -29.51158 -29.01734 -25.33456 -24.56638 -24.29200 -22.25091 -21.54173 -19.36930 -19.03183 -18.03880 -17.13317 -16.33944 -16.08338 -15.75228 -15.67849 -15.41330 -14.89464 -14.78046 -14.58763 -14.11570 -13.97509 -13.56944 -13.48197 -13.15415 -13.11011 -12.86676 -12.76092 -12.53215 -12.04667 -11.99765 -11.82096 -11.67573 -11.42554 -11.07704 -10.69995 -10.59118 -9.97547 -9.00988 -8.71746 -6.40958 0.36672 0.42413 1.48981 1.57302 1.77262 2.36912 2.53368 2.75006 3.13941 3.58034 3.72097 3.80108 3.87935 3.96811 4.08328 4.24107 4.27591 4.31306 4.41624 4.48531 4.63229 4.70170 4.83558 4.87521 4.95806 4.99824 5.07819 5.12302 5.19444 5.26297 5.34624 5.44740 5.59972 5.86493 5.92745 6.12588 6.50742 6.64164 6.78930 7.37588 8.69762 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.005074 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.747308 B = 5516.646338 C = 6113.573936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.155 3.845 3 H 0.112 0.888 4 O -0.573 6.573 5 C -0.165 4.165 6 C -0.068 4.068 7 C -0.176 4.176 8 C 0.112 3.888 9 O -0.325 6.325 10 C 0.101 3.899 11 H 0.065 0.935 12 C -0.168 4.168 13 C 0.011 3.989 14 C -0.608 4.608 15 H 0.041 0.959 16 C -0.036 4.036 17 N -0.936 5.936 18 Si 1.114 2.886 19 H -0.279 1.279 20 H -0.267 1.267 21 H -0.275 1.275 22 C -0.220 4.220 23 C -0.071 4.071 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.386 0.614 28 H 0.155 0.845 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.022 0.978 34 H -0.006 1.006 35 H 0.256 0.744 36 H 0.131 0.869 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 8.455 18.599 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.097 3.903 3 H 0.130 0.870 4 O -0.381 6.381 5 C -0.166 4.166 6 C -0.086 4.086 7 C -0.195 4.195 8 C 0.066 3.934 9 O -0.239 6.239 10 C 0.045 3.955 11 H 0.082 0.918 12 C -0.225 4.225 13 C -0.026 4.026 14 C -0.646 4.646 15 H 0.060 0.940 16 C -0.233 4.233 17 N -0.574 5.574 18 Si 0.935 3.065 19 H -0.204 1.204 20 H -0.192 1.192 21 H -0.201 1.201 22 C -0.239 4.239 23 C -0.089 4.089 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.235 0.765 28 H 0.173 0.827 29 H 0.143 0.857 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.012 0.988 35 H 0.066 0.934 36 H 0.149 0.851 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.536 9.075 17.127 19.702 hybrid contribution 0.969 -1.008 0.778 1.601 sum -2.567 8.067 17.905 19.805 Atomic orbital electron populations 1.22465 0.94545 1.03161 1.03246 1.20725 0.93522 0.95733 0.80353 0.86981 1.86577 1.77781 1.30290 1.43415 1.20685 1.03823 0.94228 0.97872 1.21029 0.95599 1.00898 0.91093 1.20657 1.06759 0.91186 1.00902 1.19614 0.94038 0.93190 0.86553 1.86173 1.77494 1.22474 1.37716 1.22399 0.98187 0.77153 0.97738 0.91753 1.22325 0.97578 1.01976 1.00609 1.19287 0.96381 0.95298 0.91606 1.22271 1.06990 1.35330 0.99968 0.94033 1.27339 1.05758 0.94556 0.95646 1.70923 1.11674 1.34955 1.39807 0.82974 0.71635 0.76318 0.75542 1.20449 1.19196 1.20067 1.21433 1.07108 1.00690 0.94628 1.20914 0.96712 0.94134 0.97111 0.92023 0.90605 0.91332 0.76458 0.82739 0.85745 0.89898 0.92523 0.90875 0.96026 0.98786 0.93430 0.85080 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.51 71.98 0.68 -1.84 16 2 C 0.16 2.66 3.83 29.85 0.11 2.78 16 3 H 0.11 1.73 8.00 -2.39 -0.02 1.71 16 4 O -0.57 -10.32 13.19 -148.98 -1.96 -12.28 16 5 C -0.17 -3.72 4.97 -19.85 -0.10 -3.82 16 6 C -0.07 -1.69 9.66 22.25 0.22 -1.47 16 7 C -0.18 -5.69 9.99 22.37 0.22 -5.47 16 8 C 0.11 4.14 6.60 22.51 0.15 4.29 16 9 O -0.32 -14.51 9.55 -92.46 -0.88 -15.39 16 10 C 0.10 4.32 2.17 30.59 0.07 4.38 16 11 H 0.06 2.68 6.31 -2.39 -0.02 2.66 16 12 C -0.17 -5.65 9.17 71.98 0.66 -4.99 16 13 C 0.01 0.59 3.99 29.85 0.12 0.71 16 14 C -0.61 -35.72 8.88 25.60 0.23 -35.49 16 15 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 16 C -0.04 -2.10 5.46 84.66 0.46 -1.64 16 17 N -0.94 -58.66 13.65 21.45 0.29 -58.36 16 18 Si 1.11 51.56 29.90 68.60 2.05 53.61 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 C -0.22 -6.79 8.23 22.37 0.18 -6.60 16 23 C -0.07 -1.69 9.31 22.25 0.21 -1.48 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.39 4.50 7.50 -74.05 -0.56 3.94 16 28 H 0.16 2.77 8.03 -2.91 -0.02 2.75 16 29 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.13 6.90 -2.38 -0.02 2.12 16 33 H 0.02 1.16 8.01 -2.38 -0.02 1.14 16 34 H -0.01 -0.35 8.01 -2.38 -0.02 -0.37 16 35 H 0.26 16.14 7.22 -92.71 -0.67 15.47 16 36 H 0.13 3.90 5.43 -2.91 -0.02 3.88 16 37 H 0.15 2.45 6.78 -2.91 -0.02 2.43 16 Total: -1.00 -71.20 308.10 3.31 -67.88 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.60 Total: 15.19 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 3.21 Total: -50.65 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.29 Total: -58.36 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -2.85 Total: -27.67 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -71.20 3.31 -67.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.136 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds