Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47296 * 2 1 4 4 C 1.52998 * 109.47079 * 239.99696 * 2 1 3 5 5 C 1.50702 * 109.46912 * 175.00005 * 4 2 1 6 6 H 1.07996 * 119.99835 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99998 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00004 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00059 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46664 * 60.00630 * 9 7 5 11 11 H 1.48499 * 109.47150 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47309 * 300.00543 * 9 7 5 13 13 O 1.42904 * 109.46803 * 120.00222 * 2 1 3 14 14 C 1.35901 * 116.99564 * 275.08965 * 13 2 1 15 15 C 1.38732 * 120.05285 * 185.45120 * 14 13 2 16 16 C 1.38143 * 119.94664 * 179.97438 * 15 14 13 17 17 C 1.38270 * 120.05232 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.94284 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47147 * 24.99877 * 18 17 16 20 20 C 1.53001 * 109.46935 * 264.99811 * 18 17 16 21 21 O 1.42897 * 109.47526 * 145.00078 * 18 17 16 22 22 C 1.38259 * 120.11206 * 0.02562 * 17 16 15 23 23 C 1.38146 * 120.05924 * 359.97438 * 22 17 16 24 24 H 1.08997 * 109.46882 * 59.99856 * 1 2 3 25 25 H 1.09000 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47298 * 299.99823 * 1 2 3 27 27 H 1.09003 * 109.47597 * 295.00079 * 4 2 1 28 28 H 1.08998 * 109.47154 * 55.00554 * 4 2 1 29 29 H 0.96996 * 119.99764 * 179.97438 * 8 7 5 30 30 H 1.08008 * 120.03062 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.97684 * 180.27479 * 16 15 14 32 32 H 1.08999 * 109.47265 * 60.00181 * 20 18 17 33 33 H 1.09007 * 109.46991 * 179.97438 * 20 18 17 34 34 H 1.09000 * 109.47257 * 299.99999 * 20 18 17 35 35 H 0.96701 * 113.99843 * 59.98868 * 21 18 17 36 36 H 1.08001 * 119.97559 * 179.97438 * 22 17 16 37 37 H 1.08001 * 120.03422 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2305 -1.1936 -2.3576 8 7 3.5765 -1.8380 -3.2993 9 14 6.0923 -1.0624 -2.4359 10 1 6.6838 -1.6884 -1.2263 11 1 6.5873 -1.7624 -3.6484 12 1 6.4856 0.3683 -2.4956 13 8 2.0063 -0.6737 1.1668 14 6 2.1106 0.0621 2.3046 15 6 2.6715 -0.4962 3.4441 16 6 2.7769 0.2539 4.5993 17 6 2.3235 1.5600 4.6207 18 6 2.4392 2.3758 5.8824 19 1 3.2529 1.9859 6.4939 20 6 1.1275 2.2926 6.6656 21 8 2.7072 3.7385 5.5457 22 6 1.7632 2.1183 3.4867 23 6 1.6555 1.3724 2.3289 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.7517 -1.7716 -1.2056 28 1 1.6055 -0.2618 -2.1369 29 1 4.0609 -2.2447 -4.0347 30 1 3.0261 -1.5163 3.4278 31 1 3.2175 -0.1788 5.4854 32 1 0.9231 1.2532 6.9225 33 1 1.2113 2.8823 7.5785 34 1 0.3138 2.6825 6.0541 35 1 2.0229 4.1509 5.0009 36 1 1.4094 3.1386 3.5060 37 1 1.2182 1.8091 1.4433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -81.943113 kcal Electronic energy + Delta-G solvation = -18028.959893 eV Core-core repulsion = 15156.977901 eV Total energy + Delta-G solvation = -2871.981991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00842 -38.34071 -36.31415 -33.49144 -31.85479 -31.42050 -30.54477 -28.45593 -27.47690 -23.86127 -23.26726 -22.80865 -20.98973 -19.91164 -18.03431 -16.95029 -16.39746 -15.94899 -15.06186 -14.84198 -14.56005 -14.45631 -14.15214 -13.44738 -13.29152 -13.18512 -12.68651 -12.49707 -12.15174 -12.00805 -11.83319 -11.73949 -11.40040 -11.27002 -10.90388 -10.73240 -10.66083 -10.40643 -10.20482 -9.98531 -9.40435 -9.13780 -8.79568 -8.39664 -7.69189 -6.02919 -4.04531 1.54737 1.64037 3.34270 3.37893 3.41879 3.85244 3.96715 4.34267 4.45423 4.66060 4.88867 5.00155 5.10226 5.16665 5.34158 5.45770 5.53815 5.56673 5.64855 5.68894 5.77839 5.86724 5.92590 5.99075 6.17296 6.20116 6.46739 6.52616 6.62506 6.70208 6.77448 7.00933 7.47189 7.47575 7.56764 7.93402 8.12631 8.34702 8.98894 9.59038 11.08463 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.004945 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.584106 B = 5660.686101 C = 6155.485985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.063 0.937 4 C 0.026 3.974 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 O -0.290 6.290 14 C 0.154 3.846 15 C -0.160 4.160 16 C -0.072 4.072 17 C -0.176 4.176 18 C 0.151 3.849 19 H 0.102 0.898 20 C -0.179 4.179 21 O -0.561 6.561 22 C -0.072 4.072 23 C -0.212 4.212 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.262 0.738 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.372 0.628 36 H 0.115 0.885 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 7.211 15.793 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 O -0.202 6.202 14 C 0.106 3.894 15 C -0.179 4.179 16 C -0.090 4.090 17 C -0.177 4.177 18 C 0.092 3.908 19 H 0.120 0.880 20 C -0.237 4.237 21 O -0.367 6.367 22 C -0.091 4.091 23 C -0.231 4.231 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.220 0.780 36 H 0.133 0.867 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.548 6.782 15.917 18.170 hybrid contribution 0.410 0.216 -0.613 0.769 sum -5.139 6.998 15.304 17.595 Atomic orbital electron populations 1.22413 0.96995 1.02628 1.01434 1.22888 0.91813 0.97141 0.85130 0.91947 1.19264 0.96601 0.96490 0.88741 1.21082 0.91672 1.34632 1.07989 0.92671 1.24971 0.98495 0.95175 0.95621 1.69939 1.35701 1.35893 1.12099 0.86636 0.85628 0.78261 0.77409 1.20153 1.21242 1.20235 1.86289 1.79657 1.38084 1.16213 1.19270 0.92206 0.90202 0.87713 1.20460 1.04469 1.01451 0.91478 1.20652 0.98065 0.93156 0.97174 1.20244 1.04994 0.95928 0.96525 1.20663 0.97384 0.80850 0.91865 0.87998 1.22492 0.97665 1.02858 1.00636 1.86596 1.50799 1.25310 1.73964 1.20516 0.97673 0.98685 0.92185 1.21333 1.07291 0.94785 0.99680 0.91357 0.91899 0.93321 0.95287 0.94358 0.92862 0.85234 0.85890 0.91401 0.91893 0.92274 0.77965 0.86688 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.17 37.16 0.34 -2.64 16 2 C 0.09 1.77 2.17 -26.73 -0.06 1.72 16 3 H 0.06 1.26 6.32 -51.93 -0.33 0.93 16 4 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.52 -14.64 8.88 -34.44 -0.31 -14.95 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 O -0.29 -6.19 9.55 -19.43 -0.19 -6.38 16 14 C 0.15 2.80 6.60 -39.22 -0.26 2.54 16 15 C -0.16 -2.58 9.99 -39.43 -0.39 -2.97 16 16 C -0.07 -0.97 9.67 -39.60 -0.38 -1.35 16 17 C -0.18 -2.25 5.01 -104.60 -0.52 -2.77 16 18 C 0.15 1.58 3.83 -27.88 -0.11 1.48 16 19 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 20 C -0.18 -1.52 9.52 37.16 0.35 -1.16 16 21 O -0.56 -6.29 13.14 -35.23 -0.46 -6.75 16 22 C -0.07 -0.96 9.32 -39.61 -0.37 -1.33 16 23 C -0.21 -3.37 8.24 -39.43 -0.32 -3.69 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.72 6.90 -51.93 -0.36 0.36 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.37 3.00 7.39 45.56 0.34 3.33 16 36 H 0.12 1.18 6.61 -52.49 -0.35 0.83 16 37 H 0.13 1.99 5.43 -52.49 -0.28 1.70 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -31.58 309.22 -7.28 -38.85 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.75 Total: 1.73 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.26 Total: -23.03 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.65 Total: -13.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.58 -7.28 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.088 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds