Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47296 * 2 1 4 4 C 1.52998 * 109.47079 * 239.99696 * 2 1 3 5 5 C 1.50702 * 109.46912 * 175.00005 * 4 2 1 6 6 H 1.07996 * 119.99835 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99998 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00004 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00059 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46664 * 60.00630 * 9 7 5 11 11 H 1.48499 * 109.47150 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47309 * 300.00543 * 9 7 5 13 13 O 1.42904 * 109.46803 * 120.00222 * 2 1 3 14 14 C 1.35901 * 116.99564 * 275.08965 * 13 2 1 15 15 C 1.38732 * 120.05285 * 185.45120 * 14 13 2 16 16 C 1.38143 * 119.94664 * 179.97438 * 15 14 13 17 17 C 1.38270 * 120.05232 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.94284 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47147 * 24.99877 * 18 17 16 20 20 C 1.53001 * 109.46935 * 264.99811 * 18 17 16 21 21 O 1.42897 * 109.47526 * 145.00078 * 18 17 16 22 22 C 1.38259 * 120.11206 * 0.02562 * 17 16 15 23 23 C 1.38146 * 120.05924 * 359.97438 * 22 17 16 24 24 H 1.08997 * 109.46882 * 59.99856 * 1 2 3 25 25 H 1.09000 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47298 * 299.99823 * 1 2 3 27 27 H 1.09003 * 109.47597 * 295.00079 * 4 2 1 28 28 H 1.08998 * 109.47154 * 55.00554 * 4 2 1 29 29 H 0.96996 * 119.99764 * 179.97438 * 8 7 5 30 30 H 1.08008 * 120.03062 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.97684 * 180.27479 * 16 15 14 32 32 H 1.08999 * 109.47265 * 60.00181 * 20 18 17 33 33 H 1.09007 * 109.46991 * 179.97438 * 20 18 17 34 34 H 1.09000 * 109.47257 * 299.99999 * 20 18 17 35 35 H 0.96701 * 113.99843 * 59.98868 * 21 18 17 36 36 H 1.08001 * 119.97559 * 179.97438 * 22 17 16 37 37 H 1.08001 * 120.03422 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2305 -1.1936 -2.3576 8 7 3.5765 -1.8380 -3.2993 9 14 6.0923 -1.0624 -2.4359 10 1 6.6838 -1.6884 -1.2263 11 1 6.5873 -1.7624 -3.6484 12 1 6.4856 0.3683 -2.4956 13 8 2.0063 -0.6737 1.1668 14 6 2.1106 0.0621 2.3046 15 6 2.6715 -0.4962 3.4441 16 6 2.7769 0.2539 4.5993 17 6 2.3235 1.5600 4.6207 18 6 2.4392 2.3758 5.8824 19 1 3.2529 1.9859 6.4939 20 6 1.1275 2.2926 6.6656 21 8 2.7072 3.7385 5.5457 22 6 1.7632 2.1183 3.4867 23 6 1.6555 1.3724 2.3289 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.7517 -1.7716 -1.2056 28 1 1.6055 -0.2618 -2.1369 29 1 4.0609 -2.2447 -4.0347 30 1 3.0261 -1.5163 3.4278 31 1 3.2175 -0.1788 5.4854 32 1 0.9231 1.2532 6.9225 33 1 1.2113 2.8823 7.5785 34 1 0.3138 2.6825 6.0541 35 1 2.0229 4.1509 5.0009 36 1 1.4094 3.1386 3.5060 37 1 1.2182 1.8091 1.4433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = -102.331981 kcal Electronic energy + Delta-G solvation = -18029.844020 eV Core-core repulsion = 15156.977901 eV Total energy + Delta-G solvation = -2872.866119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25391 -39.50423 -37.39483 -35.43970 -33.53166 -32.44137 -31.72728 -29.50689 -29.32089 -25.42188 -24.49507 -24.18198 -22.14542 -21.37038 -19.29541 -18.55105 -18.01252 -17.16081 -16.51606 -16.13537 -15.96144 -15.70825 -15.32501 -14.76551 -14.46971 -14.34061 -14.01021 -13.76605 -13.63066 -13.41014 -13.30940 -13.04782 -12.81371 -12.66821 -12.57514 -12.35288 -11.95851 -11.83991 -11.59087 -11.29113 -11.08507 -11.03792 -10.60748 -9.92730 -8.94445 -8.23410 -6.32757 0.41352 0.47825 1.36620 1.39340 1.47452 2.38292 2.46332 2.80381 3.11094 3.58787 3.75557 3.86884 3.96827 4.05776 4.20732 4.29235 4.33722 4.40186 4.45998 4.55580 4.69538 4.80526 4.90305 4.97628 5.03031 5.13146 5.15940 5.26335 5.33625 5.35659 5.47760 5.51519 5.63688 5.73622 5.93316 6.16500 6.69696 6.79084 6.81379 7.34906 8.88141 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.004945 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.584106 B = 5660.686101 C = 6155.485985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.534 4.534 6 H 0.049 0.951 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.323 6.323 14 C 0.113 3.887 15 C -0.177 4.177 16 C -0.070 4.070 17 C -0.167 4.167 18 C 0.154 3.846 19 H 0.110 0.890 20 C -0.174 4.174 21 O -0.575 6.575 22 C -0.072 4.072 23 C -0.220 4.220 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.071 0.929 27 H -0.002 1.002 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.125 0.875 31 H 0.154 0.846 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.386 0.614 36 H 0.149 0.851 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 8.905 17.872 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.009 4.009 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.191 1.191 13 O -0.237 6.237 14 C 0.067 3.933 15 C -0.196 4.196 16 C -0.088 4.088 17 C -0.168 4.168 18 C 0.095 3.905 19 H 0.127 0.873 20 C -0.231 4.231 21 O -0.383 6.383 22 C -0.090 4.090 23 C -0.238 4.238 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.016 0.984 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.143 0.857 31 H 0.171 0.829 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.236 0.764 36 H 0.166 0.834 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.286 8.494 18.009 20.601 hybrid contribution 0.320 -0.267 -1.144 1.217 sum -4.966 8.227 16.865 19.411 Atomic orbital electron populations 1.22303 0.94033 1.02791 1.03217 1.22574 0.94023 0.95989 0.83546 0.91783 1.19116 0.95491 0.95103 0.91151 1.21416 0.93300 1.34605 1.07864 0.93312 1.25844 1.03469 0.94728 0.95213 1.70053 1.37624 1.36642 1.12698 0.85595 0.79680 0.78764 0.77617 1.19876 1.20276 1.19122 1.86188 1.80995 1.39352 1.17196 1.19610 0.94926 0.91494 0.87221 1.20656 1.04973 1.01834 0.92088 1.21000 0.97327 0.93355 0.97084 1.20668 1.02901 0.95780 0.97405 1.20738 0.98834 0.80236 0.90707 0.87272 1.22438 0.96462 1.03404 1.00813 1.86583 1.51866 1.25448 1.74374 1.20903 0.96854 0.99975 0.91273 1.21448 1.07415 0.94080 1.00876 0.89993 0.92558 0.90974 0.98365 0.95610 0.92602 0.85728 0.82881 0.91038 0.90793 0.91863 0.76438 0.83353 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 9.17 71.98 0.66 -4.91 16 2 C 0.09 4.01 2.17 30.60 0.07 4.07 16 3 H 0.06 2.64 6.32 -2.39 -0.02 2.63 16 4 C 0.03 1.51 4.68 29.85 0.14 1.65 16 5 C -0.53 -31.25 8.88 25.60 0.23 -31.02 16 6 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 O -0.32 -14.32 9.55 -92.44 -0.88 -15.20 16 14 C 0.11 4.17 6.60 22.51 0.15 4.32 16 15 C -0.18 -5.69 9.99 22.37 0.22 -5.46 16 16 C -0.07 -1.73 9.67 22.25 0.22 -1.51 16 17 C -0.17 -3.78 5.01 -19.85 -0.10 -3.88 16 18 C 0.15 2.67 3.83 29.85 0.11 2.78 16 19 H 0.11 1.77 8.05 -2.39 -0.02 1.75 16 20 C -0.17 -2.30 9.52 71.98 0.68 -1.62 16 21 O -0.57 -10.86 13.14 -148.98 -1.96 -12.82 16 22 C -0.07 -1.73 9.32 22.25 0.21 -1.53 16 23 C -0.22 -6.75 8.24 22.37 0.18 -6.57 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 2.06 6.90 -2.39 -0.02 2.05 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.39 4.74 7.39 -74.06 -0.55 4.19 16 36 H 0.15 2.48 6.61 -2.91 -0.02 2.46 16 37 H 0.13 3.91 5.43 -2.91 -0.02 3.90 16 Total: -1.00 -69.49 309.22 3.22 -66.28 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.51 Total: 13.61 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 3.23 Total: -42.89 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.28 Total: -56.52 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -2.84 Total: -28.02 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -69.49 3.22 -66.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.056 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds