Wall clock time and date at job start Mon Mar 30 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47498 * 2 1 4 4 O 1.42893 * 109.47255 * 120.00524 * 2 1 3 5 5 C 1.50699 * 109.46876 * 240.00372 * 2 1 3 6 6 C 1.38272 * 119.94479 * 99.99928 * 5 2 1 7 7 C 1.38143 * 120.05460 * 179.97438 * 6 5 2 8 8 C 1.38729 * 119.94786 * 0.02562 * 7 6 5 9 9 O 1.35903 * 120.05780 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99705 * 354.63175 * 9 8 7 11 11 H 1.08996 * 109.47327 * 324.77927 * 10 9 8 12 12 C 1.52993 * 109.47352 * 84.78492 * 10 9 8 13 13 C 1.52997 * 109.47006 * 204.78483 * 10 9 8 14 14 C 1.50699 * 109.47429 * 64.99933 * 13 10 9 15 15 H 1.08005 * 119.99737 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00658 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99456 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00464 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47186 * 90.00010 * 18 16 14 20 20 H 1.48499 * 109.47368 * 210.00192 * 18 16 14 21 21 H 1.48500 * 109.46892 * 330.00217 * 18 16 14 22 22 C 1.38730 * 119.88869 * 0.25353 * 8 7 6 23 23 C 1.38153 * 119.93983 * 359.49077 * 22 8 7 24 24 H 1.08992 * 109.47017 * 59.99328 * 1 2 3 25 25 H 1.08991 * 109.47206 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46582 * 299.99581 * 1 2 3 27 27 H 0.96699 * 114.00080 * 299.99834 * 4 2 1 28 28 H 1.07996 * 119.97180 * 359.95829 * 6 5 2 29 29 H 1.08001 * 120.02685 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.47728 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47133 * 300.00110 * 12 10 9 32 32 H 1.09009 * 109.47065 * 59.99644 * 12 10 9 33 33 H 1.09001 * 109.47429 * 184.99827 * 13 10 9 34 34 H 1.08999 * 109.47543 * 305.00306 * 13 10 9 35 35 H 0.97004 * 119.99877 * 180.02562 * 17 16 14 36 36 H 1.07993 * 120.03194 * 179.73002 * 22 8 7 37 37 H 1.08006 * 119.96964 * 180.25261 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0323 -0.7103 -1.2305 6 6 2.4585 0.0209 -2.3239 7 6 2.9198 -0.6279 -3.4529 8 6 2.9549 -2.0143 -3.4893 9 8 3.4078 -2.6549 -4.5990 10 6 3.7209 -1.8444 -5.7335 11 1 3.0233 -1.0086 -5.7866 12 6 5.1482 -1.3097 -5.6000 13 6 3.6081 -2.6845 -7.0072 14 6 2.1755 -3.1090 -7.2037 15 1 1.4209 -2.8092 -6.4915 16 6 1.8281 -3.8802 -8.2926 17 7 2.7471 -4.2457 -9.1595 18 14 0.0523 -4.4058 -8.5365 19 1 -0.6595 -3.3845 -9.3462 20 1 0.0150 -5.7115 -9.2429 21 1 -0.6105 -4.5392 -7.2143 22 6 2.5213 -2.7458 -2.3931 23 6 2.0657 -2.0921 -1.2645 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.7211 -0.2703 1.9979 28 1 2.4304 1.1001 -2.2954 29 1 3.2522 -0.0563 -4.3069 30 1 5.3872 -0.6919 -6.4655 31 1 5.2286 -0.7112 -4.6926 32 1 5.8458 -2.1456 -5.5469 33 1 3.9321 -2.0923 -7.8630 34 1 4.2397 -3.5682 -6.9167 35 1 2.5027 -4.7879 -9.9258 36 1 2.5434 -3.8251 -2.4206 37 1 1.7319 -2.6611 -0.4093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:05 Heat of formation + Delta-G solvation = -80.746559 kcal Electronic energy + Delta-G solvation = -17991.425456 eV Core-core repulsion = 15119.495351 eV Total energy + Delta-G solvation = -2871.930105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88728 -38.18746 -36.38631 -33.49500 -31.94680 -31.24509 -30.57099 -28.36401 -27.44535 -23.89514 -23.05870 -22.75978 -20.94853 -19.75826 -17.72908 -17.25536 -16.35972 -15.82200 -15.35835 -14.57566 -14.55716 -14.41762 -14.10559 -13.48245 -13.27030 -12.86452 -12.70612 -12.58271 -12.03297 -11.89278 -11.79854 -11.74841 -11.39401 -11.11787 -10.85881 -10.73626 -10.59006 -10.37461 -10.21255 -9.92210 -9.37248 -9.10383 -8.69833 -8.38629 -7.64041 -6.01574 -4.02886 1.64407 1.71089 3.32624 3.38936 3.44160 3.92277 3.99174 4.23878 4.46469 4.79191 4.96865 5.05512 5.14786 5.27734 5.35613 5.53316 5.56879 5.61300 5.68627 5.74271 5.84222 5.91436 6.01166 6.05999 6.22685 6.28865 6.55576 6.57102 6.68077 6.80913 6.83013 7.09617 7.49729 7.52421 7.59990 7.95057 8.17564 8.37012 9.00753 9.60489 11.09899 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026638 B = 0.005030 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.879590 B = 5565.012657 C = 6206.990716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.152 3.848 3 H 0.058 0.942 4 O -0.564 6.564 5 C -0.145 4.145 6 C -0.071 4.071 7 C -0.217 4.217 8 C 0.156 3.844 9 O -0.290 6.290 10 C 0.086 3.914 11 H 0.062 0.938 12 C -0.178 4.178 13 C 0.025 3.975 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.166 4.166 23 C -0.053 4.053 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.374 0.626 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.129 0.871 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 9.662 16.606 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 H 0.076 0.924 4 O -0.369 6.369 5 C -0.146 4.146 6 C -0.089 4.089 7 C -0.236 4.236 8 C 0.108 3.892 9 O -0.203 6.203 10 C 0.030 3.970 11 H 0.080 0.920 12 C -0.235 4.235 13 C -0.012 4.012 14 C -0.552 4.552 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.185 4.185 23 C -0.072 4.072 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.136 0.864 29 H 0.149 0.851 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.970 8.960 15.927 18.300 hybrid contribution -1.236 0.283 0.042 1.269 sum -2.206 9.243 15.969 18.583 Atomic orbital electron populations 1.22505 0.95998 1.03119 1.02193 1.20418 0.92442 0.94015 0.83802 0.92429 1.86585 1.77005 1.57650 1.15665 1.19287 1.06355 0.94027 0.94909 1.20626 0.96774 0.99035 0.92462 1.21301 1.08197 0.93864 1.00200 1.19280 0.91169 0.90865 0.87856 1.86288 1.77476 1.36734 1.19758 1.22873 0.93714 0.94454 0.85926 0.91962 1.22416 0.98315 1.01412 1.01372 1.19269 0.98200 0.95315 0.88366 1.21125 0.93554 1.32278 1.08255 0.92617 1.24975 0.97390 0.95997 0.95963 1.69953 1.32894 1.37479 1.13308 0.86579 0.85127 0.77996 0.78279 1.20684 1.21167 1.19817 1.20495 1.05020 1.00391 0.92566 1.20657 0.96460 0.93578 0.96465 0.91374 0.91597 0.92523 0.77901 0.86413 0.85091 0.91393 0.93257 0.91909 0.94379 0.95269 0.92943 0.85318 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.51 37.16 0.35 -1.30 16 2 C 0.15 1.62 3.78 -27.88 -0.11 1.51 16 3 H 0.06 0.53 8.00 -51.93 -0.42 0.12 16 4 O -0.56 -5.95 12.64 -35.23 -0.45 -6.40 16 5 C -0.15 -2.03 4.97 -104.60 -0.52 -2.55 16 6 C -0.07 -1.00 9.66 -39.60 -0.38 -1.38 16 7 C -0.22 -3.58 8.24 -39.43 -0.32 -3.91 16 8 C 0.16 2.95 6.60 -39.22 -0.26 2.69 16 9 O -0.29 -6.35 9.55 -19.44 -0.19 -6.54 16 10 C 0.09 1.81 2.17 -26.74 -0.06 1.75 16 11 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 12 C -0.18 -3.07 9.17 37.15 0.34 -2.73 16 13 C 0.03 0.65 4.68 -27.89 -0.13 0.52 16 14 C -0.51 -14.66 8.88 -34.44 -0.31 -14.97 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 18 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.17 -2.86 9.99 -39.43 -0.39 -3.26 16 23 C -0.05 -0.81 9.35 -39.60 -0.37 -1.18 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.37 2.13 9.08 45.56 0.41 2.54 16 28 H 0.12 1.33 8.03 -52.49 -0.42 0.91 16 29 H 0.13 2.05 5.43 -52.49 -0.28 1.77 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.76 6.90 -51.93 -0.36 0.40 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.13 1.70 7.78 -52.48 -0.41 1.29 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -32.05 311.43 -7.20 -39.25 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.73 Total: 1.39 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.25 Total: -23.23 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.63 Total: -12.94 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.05 -7.20 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.495 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds