Wall clock time and date at job start Mon Mar 30 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47498 * 2 1 4 4 O 1.42893 * 109.47255 * 120.00524 * 2 1 3 5 5 C 1.50699 * 109.46876 * 240.00372 * 2 1 3 6 6 C 1.38272 * 119.94479 * 99.99928 * 5 2 1 7 7 C 1.38143 * 120.05460 * 179.97438 * 6 5 2 8 8 C 1.38729 * 119.94786 * 0.02562 * 7 6 5 9 9 O 1.35903 * 120.05780 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99705 * 354.63175 * 9 8 7 11 11 H 1.08996 * 109.47327 * 324.77927 * 10 9 8 12 12 C 1.52993 * 109.47352 * 84.78492 * 10 9 8 13 13 C 1.52997 * 109.47006 * 204.78483 * 10 9 8 14 14 C 1.50699 * 109.47429 * 64.99933 * 13 10 9 15 15 H 1.08005 * 119.99737 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00658 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99456 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00464 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47186 * 90.00010 * 18 16 14 20 20 H 1.48499 * 109.47368 * 210.00192 * 18 16 14 21 21 H 1.48500 * 109.46892 * 330.00217 * 18 16 14 22 22 C 1.38730 * 119.88869 * 0.25353 * 8 7 6 23 23 C 1.38153 * 119.93983 * 359.49077 * 22 8 7 24 24 H 1.08992 * 109.47017 * 59.99328 * 1 2 3 25 25 H 1.08991 * 109.47206 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46582 * 299.99581 * 1 2 3 27 27 H 0.96699 * 114.00080 * 299.99834 * 4 2 1 28 28 H 1.07996 * 119.97180 * 359.95829 * 6 5 2 29 29 H 1.08001 * 120.02685 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.47728 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47133 * 300.00110 * 12 10 9 32 32 H 1.09009 * 109.47065 * 59.99644 * 12 10 9 33 33 H 1.09001 * 109.47429 * 184.99827 * 13 10 9 34 34 H 1.08999 * 109.47543 * 305.00306 * 13 10 9 35 35 H 0.97004 * 119.99877 * 180.02562 * 17 16 14 36 36 H 1.07993 * 120.03194 * 179.73002 * 22 8 7 37 37 H 1.08006 * 119.96964 * 180.25261 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0323 -0.7103 -1.2305 6 6 2.4585 0.0209 -2.3239 7 6 2.9198 -0.6279 -3.4529 8 6 2.9549 -2.0143 -3.4893 9 8 3.4078 -2.6549 -4.5990 10 6 3.7209 -1.8444 -5.7335 11 1 3.0233 -1.0086 -5.7866 12 6 5.1482 -1.3097 -5.6000 13 6 3.6081 -2.6845 -7.0072 14 6 2.1755 -3.1090 -7.2037 15 1 1.4209 -2.8092 -6.4915 16 6 1.8281 -3.8802 -8.2926 17 7 2.7471 -4.2457 -9.1595 18 14 0.0523 -4.4058 -8.5365 19 1 -0.6595 -3.3845 -9.3462 20 1 0.0150 -5.7115 -9.2429 21 1 -0.6105 -4.5392 -7.2143 22 6 2.5213 -2.7458 -2.3931 23 6 2.0657 -2.0921 -1.2645 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.7211 -0.2703 1.9979 28 1 2.4304 1.1001 -2.2954 29 1 3.2522 -0.0563 -4.3069 30 1 5.3872 -0.6919 -6.4655 31 1 5.2286 -0.7112 -4.6926 32 1 5.8458 -2.1456 -5.5469 33 1 3.9321 -2.0923 -7.8630 34 1 4.2397 -3.5682 -6.9167 35 1 2.5027 -4.7879 -9.9258 36 1 2.5434 -3.8251 -2.4206 37 1 1.7319 -2.6611 -0.4093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:04 Heat of formation + Delta-G solvation = -101.759085 kcal Electronic energy + Delta-G solvation = -17992.336628 eV Core-core repulsion = 15119.495351 eV Total energy + Delta-G solvation = -2872.841276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21585 -39.36021 -37.44723 -35.45406 -33.59271 -32.35906 -31.85225 -29.46750 -29.30164 -25.43957 -24.58013 -23.97373 -22.24887 -21.18326 -19.16425 -18.54640 -18.08329 -16.99160 -16.70332 -16.37851 -15.96578 -15.58449 -15.25954 -14.79211 -14.52268 -14.28713 -14.03728 -13.72775 -13.54613 -13.39214 -13.28612 -13.11177 -12.76103 -12.65333 -12.59611 -12.34332 -11.96964 -11.71450 -11.65813 -11.29179 -11.09687 -10.88927 -10.60206 -9.91837 -8.95684 -8.22813 -6.32013 0.42589 0.47430 1.36600 1.38367 1.49630 2.38864 2.46626 2.79897 3.11729 3.41896 3.90039 3.93538 4.03961 4.08137 4.20469 4.25313 4.34811 4.42282 4.48101 4.56876 4.71246 4.81429 4.90768 4.94303 5.00303 5.12813 5.17035 5.30622 5.33535 5.37316 5.48277 5.51428 5.66536 5.74484 5.93971 6.17324 6.70106 6.79932 6.99624 7.35600 8.88996 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026638 B = 0.005030 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.879590 B = 5565.012657 C = 6206.990716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.153 3.847 3 H 0.081 0.919 4 O -0.582 6.582 5 C -0.141 4.141 6 C -0.068 4.068 7 C -0.221 4.221 8 C 0.118 3.882 9 O -0.323 6.323 10 C 0.094 3.906 11 H 0.067 0.933 12 C -0.167 4.167 13 C 0.028 3.972 14 C -0.533 4.533 15 H 0.049 0.951 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.272 1.272 22 C -0.183 4.183 23 C -0.057 4.057 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.397 0.603 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.027 0.973 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.122 0.878 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 11.640 18.462 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.095 3.905 3 H 0.099 0.901 4 O -0.391 6.391 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.239 4.239 8 C 0.072 3.928 9 O -0.237 6.237 10 C 0.038 3.962 11 H 0.085 0.915 12 C -0.224 4.224 13 C -0.009 4.009 14 C -0.571 4.571 15 H 0.067 0.933 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.201 4.201 23 C -0.075 4.075 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.247 0.753 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.241 10.958 17.814 21.034 hybrid contribution -0.858 -0.307 -0.395 0.994 sum -3.099 10.650 17.419 20.651 Atomic orbital electron populations 1.22471 0.94813 1.02647 1.03538 1.20450 0.93188 0.94366 0.82500 0.90088 1.86524 1.77364 1.58435 1.16766 1.19813 1.04217 0.93692 0.96369 1.21018 0.95294 1.00864 0.91359 1.21456 1.08280 0.92825 1.01386 1.19562 0.93537 0.92242 0.87461 1.86190 1.78827 1.37967 1.20745 1.22592 0.96168 0.93223 0.84208 0.91532 1.22312 0.95476 1.01485 1.03161 1.19121 0.96277 0.94635 0.90848 1.21448 0.94741 1.32616 1.08249 0.93255 1.25855 1.01923 0.95937 0.95623 1.70066 1.35051 1.38100 1.13855 0.85520 0.79728 0.77998 0.78278 1.19230 1.20446 1.19664 1.20638 1.05868 1.00374 0.93266 1.20848 0.96105 0.94599 0.95938 0.91523 0.92992 0.89749 0.75307 0.82800 0.84527 0.89858 0.91019 0.92651 0.95518 0.98438 0.92631 0.86033 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.51 71.98 0.68 -1.94 16 2 C 0.15 2.70 3.78 29.85 0.11 2.81 16 3 H 0.08 1.10 8.00 -2.38 -0.02 1.08 16 4 O -0.58 -10.32 12.64 -148.98 -1.88 -12.20 16 5 C -0.14 -3.57 4.97 -19.85 -0.10 -3.66 16 6 C -0.07 -1.72 9.66 22.26 0.22 -1.51 16 7 C -0.22 -7.05 8.24 22.36 0.18 -6.86 16 8 C 0.12 4.53 6.60 22.50 0.15 4.68 16 9 O -0.32 -14.70 9.55 -92.46 -0.88 -15.58 16 10 C 0.09 4.04 2.17 30.59 0.07 4.10 16 11 H 0.07 2.76 6.32 -2.39 -0.02 2.74 16 12 C -0.17 -5.74 9.17 71.98 0.66 -5.08 16 13 C 0.03 1.51 4.68 29.85 0.14 1.65 16 14 C -0.53 -31.28 8.88 25.60 0.23 -31.06 16 15 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 16 C 0.00 0.27 5.46 84.65 0.46 0.73 16 17 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 18 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.18 -6.43 9.99 22.37 0.22 -6.20 16 23 C -0.06 -1.66 9.35 22.26 0.21 -1.45 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.40 3.00 9.08 -74.06 -0.67 2.33 16 28 H 0.15 2.78 8.03 -2.91 -0.02 2.76 16 29 H 0.14 4.10 5.43 -2.91 -0.02 4.08 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.07 2.12 6.90 -2.39 -0.02 2.11 16 32 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.14 3.58 7.78 -2.91 -0.02 3.56 16 Total: -1.00 -70.76 311.43 3.16 -67.60 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.38 Total: 13.08 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 3.23 Total: -43.79 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.28 Total: -56.73 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -2.77 Total: -27.78 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.76 3.16 -67.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.159 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds