Wall clock time and date at job start Mon Mar 30 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47174 * 2 1 4 4 O 1.42898 * 109.47083 * 120.00133 * 2 1 3 5 5 C 1.50700 * 109.47150 * 239.99972 * 2 1 3 6 6 C 1.38292 * 119.97105 * 279.97677 * 5 2 1 7 7 C 1.38249 * 120.10869 * 179.72409 * 6 5 2 8 8 C 1.38162 * 120.05885 * 0.54987 * 7 6 5 9 9 C 1.38714 * 119.93762 * 359.47325 * 8 7 6 10 10 O 1.35900 * 120.05269 * 180.22821 * 9 8 7 11 11 C 1.42902 * 117.00216 * 354.62944 * 10 9 8 12 12 H 1.09004 * 109.47240 * 324.79503 * 11 10 9 13 13 C 1.53004 * 109.47090 * 84.79477 * 11 10 9 14 14 C 1.52996 * 109.47442 * 204.79576 * 11 10 9 15 15 C 1.50692 * 109.47213 * 65.00088 * 14 11 10 16 16 H 1.08000 * 120.00197 * 359.97438 * 15 14 11 17 17 C 1.37882 * 119.99987 * 180.02562 * 15 14 11 18 18 N 1.31509 * 120.00015 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99897 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47121 * 90.00121 * 19 17 15 21 21 H 1.48506 * 109.46681 * 210.00218 * 19 17 15 22 22 H 1.48502 * 109.47165 * 329.99655 * 19 17 15 23 23 C 1.38121 * 119.97295 * 99.99687 * 5 2 1 24 24 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47474 * 299.99870 * 1 2 3 26 26 H 1.09001 * 109.47059 * 60.00149 * 1 2 3 27 27 H 0.96701 * 114.00414 * 60.00253 * 4 2 1 28 28 H 1.07995 * 119.94741 * 0.02659 * 6 5 2 29 29 H 1.08006 * 119.96841 * 180.27749 * 7 6 5 30 30 H 1.07991 * 120.02937 * 179.74898 * 8 7 6 31 31 H 1.08995 * 109.47202 * 59.99658 * 13 11 10 32 32 H 1.09000 * 109.47260 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.46493 * 300.00439 * 13 11 10 34 34 H 1.09006 * 109.47400 * 185.00425 * 14 11 10 35 35 H 1.09002 * 109.46941 * 304.99740 * 14 11 10 36 36 H 0.97000 * 120.00209 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.02705 * 0.02580 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.0669 -2.0925 -1.2645 7 6 2.5219 -2.7472 -2.3940 8 6 2.9539 -2.0218 -3.4876 9 6 2.9205 -0.6354 -3.4556 10 8 3.3406 0.0804 -4.5318 11 6 3.9136 -0.6536 -5.6158 12 1 4.4757 -1.5012 -5.2237 13 6 2.7994 -1.1611 -6.5334 14 6 4.8522 0.2577 -6.4091 15 6 6.0160 0.6589 -5.5400 16 1 6.0797 0.3001 -4.5234 17 6 6.9991 1.4848 -6.0425 18 7 8.0146 1.8353 -5.2840 19 14 6.8879 2.1070 -7.8004 20 1 6.1434 3.3917 -7.8246 21 1 8.2559 2.3174 -8.3384 22 1 6.1760 1.1065 -8.6355 23 6 2.4582 0.0194 -2.3231 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5953 1.2329 28 1 1.7334 -2.6614 -0.4092 29 1 2.5437 -3.8267 -2.4198 30 1 3.3129 -2.5337 -4.3680 31 1 2.2372 -0.3136 -6.9254 32 1 3.2364 -1.7214 -7.3600 33 1 2.1307 -1.8103 -5.9681 34 1 5.2201 -0.2748 -7.2862 35 1 4.3109 1.1492 -6.7260 36 1 8.7060 2.4167 -5.6373 37 1 2.4316 1.0987 -2.2957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:14 Heat of formation + Delta-G solvation = -100.138006 kcal Electronic energy + Delta-G solvation = -18097.852052 eV Core-core repulsion = 15225.081071 eV Total energy + Delta-G solvation = -2872.770981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28476 -39.53624 -37.45622 -35.40210 -33.69451 -32.98423 -30.80104 -30.12325 -29.68128 -25.25682 -24.80666 -23.49874 -22.76375 -21.04058 -19.29418 -18.93233 -17.48878 -17.18759 -16.93987 -16.35174 -16.09477 -15.73729 -15.32013 -14.77894 -14.57538 -14.39512 -14.18846 -14.02979 -13.64811 -13.59180 -13.18717 -12.91178 -12.70493 -12.56207 -12.40524 -12.38036 -11.88997 -11.80390 -11.71829 -11.36577 -11.24639 -11.09747 -10.79113 -9.80232 -9.05402 -8.30094 -6.34876 0.32601 0.52999 1.35126 1.37459 1.48590 2.34404 2.40517 2.79279 3.06036 3.53528 3.66870 3.88213 3.99415 4.09609 4.16426 4.18139 4.24268 4.37643 4.39928 4.53431 4.63955 4.80016 4.86511 4.92582 4.99735 5.03262 5.08320 5.20228 5.23738 5.28162 5.44670 5.51012 5.57588 5.60063 5.91512 6.22641 6.64507 6.73120 6.80223 7.27864 8.87454 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.005087 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.015099 B = 5502.649198 C = 5955.027609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.146 3.854 3 H 0.096 0.904 4 O -0.569 6.569 5 C -0.080 4.080 6 C -0.159 4.159 7 C -0.075 4.075 8 C -0.226 4.226 9 C 0.118 3.882 10 O -0.325 6.325 11 C 0.095 3.905 12 H 0.060 0.940 13 C -0.167 4.167 14 C -0.010 4.010 15 C -0.525 4.525 16 H 0.021 0.979 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.955 3.045 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.237 1.237 23 C -0.176 4.176 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.389 0.611 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.308 -9.615 5.252 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.087 3.913 3 H 0.114 0.886 4 O -0.377 6.377 5 C -0.080 4.080 6 C -0.177 4.177 7 C -0.093 4.093 8 C -0.244 4.244 9 C 0.072 3.928 10 O -0.239 6.239 11 C 0.039 3.961 12 H 0.078 0.922 13 C -0.225 4.225 14 C -0.047 4.047 15 C -0.563 4.563 16 H 0.039 0.961 17 C -0.195 4.195 18 N -0.594 5.594 19 Si 0.777 3.223 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.160 1.160 23 C -0.195 4.195 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.239 0.761 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.894 -8.744 5.317 19.752 hybrid contribution 0.557 0.103 -0.786 0.968 sum -16.337 -8.642 4.531 19.029 Atomic orbital electron populations 1.22396 0.93171 1.03889 1.03267 1.20774 0.94524 0.95365 0.80667 0.88579 1.86614 1.77884 1.30471 1.42779 1.20531 0.97357 0.94965 0.95173 1.21062 1.03912 0.93083 0.99640 1.21268 0.95257 1.01051 0.91720 1.21554 1.07942 0.92483 1.02457 1.19479 0.93927 0.91526 0.87895 1.86157 1.74170 1.37597 1.25972 1.22486 0.93864 0.94282 0.85468 0.92231 1.22337 0.98191 1.01926 1.00003 1.19707 0.93254 0.96091 0.95697 1.21284 1.06426 1.29876 0.98741 0.96081 1.26071 0.94445 0.95895 1.03066 1.70086 1.12786 1.37391 1.39173 0.85598 0.77818 0.79720 0.79122 1.19576 1.20823 1.15980 1.20402 1.06226 1.00293 0.92573 0.90618 0.90481 0.91546 0.76079 0.82653 0.82685 0.84831 0.91732 0.89239 0.91225 0.92755 0.95725 0.92498 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.51 71.98 0.68 -2.05 16 2 C 0.15 3.22 3.83 29.85 0.11 3.34 16 3 H 0.10 2.33 8.00 -2.39 -0.02 2.31 16 4 O -0.57 -12.28 13.19 -148.98 -1.96 -14.25 16 5 C -0.08 -2.15 4.97 -19.88 -0.10 -2.25 16 6 C -0.16 -3.59 9.32 22.29 0.21 -3.38 16 7 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 8 C -0.23 -7.14 8.24 22.37 0.18 -6.96 16 9 C 0.12 4.48 6.60 22.51 0.15 4.63 16 10 O -0.32 -14.40 9.55 -92.43 -0.88 -15.28 16 11 C 0.09 3.83 2.17 30.59 0.07 3.90 16 12 H 0.06 2.44 6.32 -2.39 -0.02 2.43 16 13 C -0.17 -4.99 9.17 71.98 0.66 -4.33 16 14 C -0.01 -0.49 3.75 29.84 0.11 -0.38 16 15 C -0.53 -31.46 9.43 25.60 0.24 -31.22 16 16 H 0.02 1.42 7.99 -2.91 -0.02 1.40 16 17 C 0.00 0.09 5.47 84.66 0.46 0.55 16 18 N -0.95 -61.77 13.96 21.45 0.30 -61.47 16 19 Si 0.95 44.60 27.47 68.60 1.88 46.48 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 23 C -0.18 -6.10 9.61 22.37 0.21 -5.88 16 24 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.39 5.02 7.50 -74.06 -0.56 4.47 16 28 H 0.16 2.18 6.78 -2.91 -0.02 2.16 16 29 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.13 3.99 5.42 -2.91 -0.02 3.97 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 1.83 6.90 -2.38 -0.02 1.82 16 34 H 0.05 2.38 7.20 -2.38 -0.02 2.36 16 35 H 0.02 1.16 7.57 -2.39 -0.02 1.14 16 36 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 37 H 0.12 4.14 8.03 -2.91 -0.02 4.11 16 Total: -1.00 -74.87 305.82 3.01 -71.86 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.45 Total: 18.29 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 3.22 Total: -45.64 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.30 Total: -61.47 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -2.85 Total: -29.53 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -74.87 3.01 -71.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.278 kcal (2) G-P(sol) polarization free energy of solvation -74.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds