Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 O 1.42906 * 109.47165 * 119.99586 * 2 1 3 5 5 C 1.50699 * 109.47229 * 239.99787 * 2 1 3 6 6 C 1.38167 * 120.02531 * 265.32182 * 5 2 1 7 7 C 1.38245 * 120.05152 * 180.29520 * 6 5 2 8 8 C 1.38286 * 120.11621 * 359.67955 * 7 6 5 9 9 C 1.38121 * 120.05283 * 0.02562 * 8 7 6 10 10 C 1.38705 * 120.02998 * 84.99867 * 5 2 1 11 11 O 1.35900 * 120.05574 * 0.02562 * 10 5 2 12 12 C 1.42897 * 117.00237 * 185.13322 * 11 10 5 13 13 H 1.09000 * 109.47328 * 35.18297 * 12 11 10 14 14 C 1.53003 * 109.47154 * 275.18827 * 12 11 10 15 15 C 1.53004 * 109.47350 * 155.18612 * 12 11 10 16 16 C 1.50699 * 109.47057 * 294.99852 * 15 12 11 17 17 H 1.08004 * 119.99535 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00179 * 179.97438 * 16 15 12 19 19 N 1.31521 * 119.99805 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47034 * 90.00337 * 20 18 16 22 22 H 1.48498 * 109.47140 * 209.99941 * 20 18 16 23 23 H 1.48497 * 109.47399 * 330.00013 * 20 18 16 24 24 H 1.08993 * 109.47674 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47135 * 300.00738 * 1 2 3 26 26 H 1.09006 * 109.46914 * 59.99661 * 1 2 3 27 27 H 0.96701 * 113.99126 * 59.99549 * 4 2 1 28 28 H 1.08003 * 119.97558 * 359.97438 * 6 5 2 29 29 H 1.08005 * 119.94350 * 179.70212 * 7 6 5 30 30 H 1.08001 * 119.97827 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.03086 * 179.97438 * 9 8 7 32 32 H 1.09005 * 109.47428 * 180.02562 * 14 12 11 33 33 H 1.08997 * 109.47490 * 59.99878 * 14 12 11 34 34 H 1.09005 * 109.47053 * 299.99420 * 14 12 11 35 35 H 1.09003 * 109.46910 * 55.00133 * 15 12 11 36 36 H 1.09001 * 109.46844 * 174.99798 * 15 12 11 37 37 H 0.96996 * 119.99836 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.3548 -2.0526 -1.1706 7 6 2.8215 -2.7034 -2.2974 8 6 2.9605 -2.0150 -3.4887 9 6 2.6337 -0.6747 -3.5552 10 6 2.1650 -0.0191 -2.4256 11 8 1.8428 1.2996 -2.4885 12 6 1.8961 1.9198 -3.7747 13 1 1.5820 1.2056 -4.5359 14 6 3.3282 2.3749 -4.0626 15 6 0.9620 3.1314 -3.7959 16 6 -0.4635 2.6696 -3.6348 17 1 -0.6812 1.6172 -3.5276 18 6 -1.4894 3.5906 -3.6232 19 7 -1.2241 4.8722 -3.7532 20 14 -3.2563 3.0181 -3.4242 21 1 -3.6053 2.9817 -1.9812 22 1 -4.1637 3.9585 -4.1294 23 1 -3.4045 1.6589 -4.0038 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7209 -1.5951 1.2330 28 1 2.2471 -2.5925 -0.2414 29 1 3.0776 -3.7515 -2.2474 30 1 3.3249 -2.5257 -4.3677 31 1 2.7429 -0.1373 -4.4856 32 1 3.3689 2.8485 -5.0435 33 1 3.9937 1.5118 -4.0476 34 1 3.6424 3.0893 -3.3015 35 1 1.2207 3.8040 -2.9780 36 1 1.0689 3.6561 -4.7453 37 1 -1.9459 5.5201 -3.7454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -81.055202 kcal Electronic energy + Delta-G solvation = -18712.584455 eV Core-core repulsion = 15840.640966 eV Total energy + Delta-G solvation = -2871.943489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10145 -37.79591 -36.48220 -33.54015 -32.05932 -31.14811 -29.87020 -28.58874 -27.48456 -23.71892 -23.52973 -22.36857 -20.95480 -19.84755 -18.04675 -16.53432 -16.40844 -15.88427 -15.06504 -14.74930 -14.59908 -14.31956 -14.06274 -13.69183 -13.17582 -12.94667 -12.41473 -12.03779 -11.95767 -11.83118 -11.68522 -11.57386 -11.43824 -11.13669 -10.89400 -10.76262 -10.63633 -10.47009 -10.09501 -9.85915 -9.41313 -9.14942 -8.63729 -8.42014 -7.71081 -6.05055 -4.06621 1.51061 1.73219 3.29826 3.36271 3.39318 3.84269 3.99712 4.42609 4.59640 4.85638 5.04608 5.19855 5.31950 5.38779 5.51577 5.52683 5.62712 5.66650 5.73587 5.80219 5.97445 6.04817 6.12806 6.20008 6.30493 6.51659 6.55979 6.59117 6.68470 6.71469 6.77595 7.03213 7.46651 7.55321 7.74777 7.91282 8.10196 8.32504 8.96916 9.56861 11.06367 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.007348 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.652975 B = 3809.428793 C = 4453.216977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.154 3.846 3 H 0.114 0.886 4 O -0.562 6.562 5 C -0.158 4.158 6 C -0.079 4.079 7 C -0.172 4.172 8 C -0.083 4.083 9 C -0.213 4.213 10 C 0.159 3.841 11 O -0.289 6.289 12 C 0.087 3.913 13 H 0.062 0.938 14 C -0.178 4.178 15 C 0.026 3.974 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.367 0.633 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.199 -12.392 2.914 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.096 3.904 3 H 0.131 0.869 4 O -0.368 6.368 5 C -0.159 4.159 6 C -0.097 4.097 7 C -0.190 4.190 8 C -0.101 4.101 9 C -0.232 4.232 10 C 0.111 3.889 11 O -0.201 6.201 12 C 0.031 3.969 13 H 0.080 0.920 14 C -0.236 4.236 15 C -0.011 4.011 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.214 0.786 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.319 -11.469 3.157 13.967 hybrid contribution -1.215 -0.835 -0.423 1.534 sum 6.105 -12.304 2.734 14.004 Atomic orbital electron populations 1.22437 0.95206 1.01933 1.03968 1.20602 0.93227 0.96021 0.80579 0.86874 1.86620 1.77396 1.28661 1.44080 1.19889 1.06674 0.94418 0.94950 1.20584 0.98018 0.92869 0.98225 1.20845 1.05121 0.99781 0.93282 1.20890 0.97950 0.93689 0.97562 1.21375 1.06878 0.96230 0.98736 1.18939 0.92062 0.84793 0.93090 1.86251 1.81480 1.18303 1.34059 1.22887 0.95327 0.96784 0.81888 0.91971 1.22421 0.97263 1.01424 1.02452 1.19268 0.92922 0.90466 0.98432 1.21090 0.91061 0.93278 1.49729 0.92647 1.24965 0.99113 0.94863 0.95300 1.69947 1.32389 1.00680 1.50478 0.86620 0.84742 0.78540 0.78321 1.20535 1.21207 1.19898 0.93013 0.91855 0.89867 0.78600 0.86141 0.86496 0.86365 0.85131 0.91376 0.93286 0.91876 0.95255 0.94376 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.52 37.16 0.35 -2.45 16 2 C 0.15 2.47 3.55 -27.88 -0.10 2.37 16 3 H 0.11 2.03 7.69 -51.93 -0.40 1.63 16 4 O -0.56 -8.02 13.00 -35.23 -0.46 -8.47 16 5 C -0.16 -2.57 5.08 -104.48 -0.53 -3.10 16 6 C -0.08 -1.07 9.30 -39.60 -0.37 -1.44 16 7 C -0.17 -2.21 10.04 -39.56 -0.40 -2.60 16 8 C -0.08 -1.13 10.04 -39.61 -0.40 -1.52 16 9 C -0.21 -3.42 8.24 -39.43 -0.32 -3.75 16 10 C 0.16 2.87 6.57 -39.22 -0.26 2.61 16 11 O -0.29 -5.94 8.69 -19.43 -0.17 -6.11 16 12 C 0.09 1.76 2.17 -26.73 -0.06 1.70 16 13 H 0.06 1.24 6.32 -51.93 -0.33 0.91 16 14 C -0.18 -2.99 9.17 37.16 0.34 -2.65 16 15 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 16 C -0.51 -14.16 8.88 -34.44 -0.31 -14.46 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.37 3.73 7.32 45.56 0.33 4.07 16 28 H 0.12 1.26 6.41 -52.48 -0.34 0.92 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.13 2.00 5.42 -52.49 -0.28 1.72 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.74 6.89 -51.93 -0.36 0.38 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -30.45 307.76 -7.27 -37.71 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.72 Total: 4.57 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -2.27 Total: -23.23 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.63 Total: -14.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.45 -7.27 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.344 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds