Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 O 1.42906 * 109.47165 * 119.99586 * 2 1 3 5 5 C 1.50699 * 109.47229 * 239.99787 * 2 1 3 6 6 C 1.38167 * 120.02531 * 265.32182 * 5 2 1 7 7 C 1.38245 * 120.05152 * 180.29520 * 6 5 2 8 8 C 1.38286 * 120.11621 * 359.67955 * 7 6 5 9 9 C 1.38121 * 120.05283 * 0.02562 * 8 7 6 10 10 C 1.38705 * 120.02998 * 84.99867 * 5 2 1 11 11 O 1.35900 * 120.05574 * 0.02562 * 10 5 2 12 12 C 1.42897 * 117.00237 * 185.13322 * 11 10 5 13 13 H 1.09000 * 109.47328 * 35.18297 * 12 11 10 14 14 C 1.53003 * 109.47154 * 275.18827 * 12 11 10 15 15 C 1.53004 * 109.47350 * 155.18612 * 12 11 10 16 16 C 1.50699 * 109.47057 * 294.99852 * 15 12 11 17 17 H 1.08004 * 119.99535 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00179 * 179.97438 * 16 15 12 19 19 N 1.31521 * 119.99805 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47034 * 90.00337 * 20 18 16 22 22 H 1.48498 * 109.47140 * 209.99941 * 20 18 16 23 23 H 1.48497 * 109.47399 * 330.00013 * 20 18 16 24 24 H 1.08993 * 109.47674 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47135 * 300.00738 * 1 2 3 26 26 H 1.09006 * 109.46914 * 59.99661 * 1 2 3 27 27 H 0.96701 * 113.99126 * 59.99549 * 4 2 1 28 28 H 1.08003 * 119.97558 * 359.97438 * 6 5 2 29 29 H 1.08005 * 119.94350 * 179.70212 * 7 6 5 30 30 H 1.08001 * 119.97827 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.03086 * 179.97438 * 9 8 7 32 32 H 1.09005 * 109.47428 * 180.02562 * 14 12 11 33 33 H 1.08997 * 109.47490 * 59.99878 * 14 12 11 34 34 H 1.09005 * 109.47053 * 299.99420 * 14 12 11 35 35 H 1.09003 * 109.46910 * 55.00133 * 15 12 11 36 36 H 1.09001 * 109.46844 * 174.99798 * 15 12 11 37 37 H 0.96996 * 119.99836 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.3548 -2.0526 -1.1706 7 6 2.8215 -2.7034 -2.2974 8 6 2.9605 -2.0150 -3.4887 9 6 2.6337 -0.6747 -3.5552 10 6 2.1650 -0.0191 -2.4256 11 8 1.8428 1.2996 -2.4885 12 6 1.8961 1.9198 -3.7747 13 1 1.5820 1.2056 -4.5359 14 6 3.3282 2.3749 -4.0626 15 6 0.9620 3.1314 -3.7959 16 6 -0.4635 2.6696 -3.6348 17 1 -0.6812 1.6172 -3.5276 18 6 -1.4894 3.5906 -3.6232 19 7 -1.2241 4.8722 -3.7532 20 14 -3.2563 3.0181 -3.4242 21 1 -3.6053 2.9817 -1.9812 22 1 -4.1637 3.9585 -4.1294 23 1 -3.4045 1.6589 -4.0038 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7209 -1.5951 1.2330 28 1 2.2471 -2.5925 -0.2414 29 1 3.0776 -3.7515 -2.2474 30 1 3.3249 -2.5257 -4.3677 31 1 2.7429 -0.1373 -4.4856 32 1 3.3689 2.8485 -5.0435 33 1 3.9937 1.5118 -4.0476 34 1 3.6424 3.0893 -3.3015 35 1 1.2207 3.8040 -2.9780 36 1 1.0689 3.6561 -4.7453 37 1 -1.9459 5.5201 -3.7454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -100.439442 kcal Electronic energy + Delta-G solvation = -18713.425018 eV Core-core repulsion = 15840.640966 eV Total energy + Delta-G solvation = -2872.784052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37044 -39.13148 -37.66011 -35.46473 -33.65354 -32.55069 -31.03476 -29.79719 -29.36769 -25.36704 -24.90644 -23.81793 -22.16074 -21.34334 -19.33195 -18.53599 -17.76132 -17.21360 -16.54748 -16.24003 -16.05693 -15.59234 -15.37749 -14.94891 -14.52566 -14.46291 -13.85095 -13.75537 -13.46933 -13.36831 -13.12842 -12.90484 -12.77397 -12.70333 -12.63713 -12.33860 -12.03244 -11.86399 -11.74216 -11.34828 -11.11610 -10.99082 -10.59926 -9.75897 -8.96143 -8.22185 -6.30817 0.39352 0.57989 1.36455 1.37495 1.47957 2.38333 2.46218 2.85099 3.12737 3.47221 3.69236 3.97754 4.00907 4.15625 4.20961 4.27601 4.27972 4.40877 4.46657 4.55726 4.70752 4.80152 4.83698 4.98826 4.99077 5.15498 5.16056 5.24253 5.36282 5.45617 5.51668 5.58348 5.61739 5.75214 5.99644 6.17853 6.68673 6.80279 6.82253 7.36554 8.89684 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.007348 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.652975 B = 3809.428793 C = 4453.216977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.162 3.838 3 H 0.081 0.919 4 O -0.565 6.565 5 C -0.174 4.174 6 C -0.077 4.077 7 C -0.162 4.162 8 C -0.083 4.083 9 C -0.226 4.226 10 C 0.120 3.880 11 O -0.317 6.317 12 C 0.096 3.904 13 H 0.064 0.936 14 C -0.168 4.168 15 C 0.029 3.971 16 C -0.526 4.526 17 H 0.051 0.949 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.387 0.613 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.054 0.946 35 H -0.003 1.003 36 H 0.024 0.976 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.451 -15.609 3.152 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.099 0.901 4 O -0.373 6.373 5 C -0.175 4.175 6 C -0.095 4.095 7 C -0.180 4.180 8 C -0.101 4.101 9 C -0.245 4.245 10 C 0.074 3.926 11 O -0.230 6.230 12 C 0.040 3.960 13 H 0.082 0.918 14 C -0.225 4.225 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.069 0.931 18 C -0.193 4.193 19 N -0.571 5.571 20 Si 0.780 3.220 21 H -0.200 1.200 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.237 0.763 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.167 0.833 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.016 0.984 36 H 0.042 0.958 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.580 -14.717 3.397 16.899 hybrid contribution -1.233 0.046 -0.445 1.311 sum 6.348 -14.670 2.952 16.255 Atomic orbital electron populations 1.22349 0.95266 1.02990 1.02242 1.20268 0.93027 0.94948 0.81479 0.90107 1.86587 1.77356 1.30284 1.43059 1.20073 1.07481 0.95713 0.94208 1.21022 0.96697 0.91654 1.00135 1.21343 1.02876 1.01423 0.92330 1.21300 0.96857 0.92640 0.99266 1.21517 1.07325 0.97565 0.98064 1.19306 0.94511 0.83882 0.94886 1.86169 1.82873 1.20348 1.33634 1.22549 0.96114 0.94921 0.82415 0.91787 1.22315 0.95304 1.02070 1.02800 1.19106 0.93360 0.92019 0.96273 1.21400 0.92556 0.93119 1.49288 0.93088 1.25821 1.03530 0.94931 0.94987 1.70065 1.33763 1.01795 1.51506 0.85595 0.79517 0.78461 0.78444 1.20034 1.20401 1.18971 0.90517 0.91495 0.93548 0.76270 0.82732 0.82725 0.83324 0.85189 0.90073 0.91171 0.92661 0.98429 0.95781 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.38 9.52 71.98 0.68 -4.70 16 2 C 0.16 5.18 3.55 29.85 0.11 5.29 16 3 H 0.08 3.08 7.69 -2.38 -0.02 3.06 16 4 O -0.56 -15.09 13.00 -148.98 -1.94 -17.03 16 5 C -0.17 -5.48 5.08 -19.77 -0.10 -5.58 16 6 C -0.08 -1.82 9.30 22.25 0.21 -1.62 16 7 C -0.16 -3.42 10.04 22.28 0.22 -3.20 16 8 C -0.08 -1.97 10.04 22.25 0.22 -1.75 16 9 C -0.23 -6.97 8.24 22.37 0.18 -6.79 16 10 C 0.12 4.36 6.57 22.51 0.15 4.51 16 11 O -0.32 -13.64 8.69 -92.43 -0.80 -14.44 16 12 C 0.10 4.02 2.17 30.60 0.07 4.09 16 13 H 0.06 2.62 6.32 -2.39 -0.02 2.60 16 14 C -0.17 -5.70 9.17 71.98 0.66 -5.04 16 15 C 0.03 1.55 4.68 29.85 0.14 1.69 16 16 C -0.53 -30.09 8.88 25.60 0.23 -29.86 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 18 C 0.01 0.30 5.46 84.65 0.46 0.76 16 19 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 20 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.39 6.59 7.32 -74.06 -0.54 6.05 16 28 H 0.16 2.48 6.41 -2.91 -0.02 2.46 16 29 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.13 3.89 5.42 -2.91 -0.02 3.88 16 32 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.07 2.07 6.89 -2.39 -0.02 2.06 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.30 307.76 3.32 -64.98 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.52 Total: 18.01 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 3.23 Total: -42.21 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -2.74 Total: -31.46 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.30 3.32 -64.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.463 kcal (2) G-P(sol) polarization free energy of solvation -68.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds