Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47197 * 2 1 4 4 C 1.52994 * 109.47558 * 239.99454 * 2 1 3 5 5 C 1.50697 * 109.47227 * 175.00093 * 4 2 1 6 6 H 1.07999 * 120.00155 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99810 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00257 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99732 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47025 * 60.00059 * 9 7 5 11 11 H 1.48499 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47010 * 299.99706 * 9 7 5 13 13 O 1.42905 * 109.47118 * 119.99410 * 2 1 3 14 14 C 1.35903 * 116.99932 * 275.18105 * 13 2 1 15 15 C 1.38754 * 120.05422 * 5.41408 * 14 13 2 16 16 C 1.38125 * 119.93919 * 180.02562 * 15 14 13 17 17 C 1.38288 * 120.05744 * 359.97421 * 16 15 14 18 18 C 1.38236 * 120.11266 * 0.02562 * 17 16 15 19 19 C 1.38169 * 120.05320 * 359.76504 * 18 17 16 20 20 C 1.50706 * 120.02527 * 180.25037 * 19 18 17 21 21 H 1.09002 * 109.47357 * 215.23082 * 20 19 18 22 22 C 1.53009 * 109.46749 * 95.23879 * 20 19 18 23 23 O 1.42897 * 109.47251 * 335.24015 * 20 19 18 24 24 H 1.09004 * 109.46501 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46743 * 60.00683 * 1 2 3 26 26 H 1.08991 * 109.47338 * 300.00618 * 1 2 3 27 27 H 1.09003 * 109.47232 * 294.99973 * 4 2 1 28 28 H 1.08999 * 109.47099 * 55.00145 * 4 2 1 29 29 H 0.96998 * 120.00177 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.03092 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.97124 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.93838 * 180.02562 * 17 16 15 33 33 H 1.08000 * 119.97187 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47123 * 59.99883 * 22 20 19 35 35 H 1.09000 * 109.46630 * 180.02562 * 22 20 19 36 36 H 1.09000 * 109.46982 * 299.99423 * 22 20 19 37 37 H 0.96691 * 114.00313 * 59.99935 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3125 6 1 4.0790 -0.0854 -0.5394 7 6 4.2305 -1.1928 -2.3581 8 7 3.5766 -1.8372 -3.2997 9 14 6.0921 -1.0603 -2.4370 10 1 6.6846 -1.6864 -1.2278 11 1 6.5872 -1.7606 -3.6494 12 1 6.4844 0.3706 -2.4964 13 8 2.0064 -0.6735 1.1669 14 6 2.1089 0.0619 2.3051 15 6 1.6537 1.3724 2.3291 16 6 1.7595 2.1179 3.4871 17 6 2.3182 1.5590 4.6219 18 6 2.7725 0.2536 4.6006 19 6 2.6649 -0.4977 3.4460 20 6 3.1553 -1.9226 3.4251 21 1 3.5760 -2.1477 2.4451 22 6 1.9862 -2.8684 3.7077 23 8 4.1603 -2.0952 4.4261 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 0.5139 0.8898 27 1 1.7518 -1.7716 -1.2054 28 1 1.6055 -0.2619 -2.1369 29 1 4.0610 -2.2440 -4.0351 30 1 1.2169 1.8091 1.4432 31 1 1.4050 3.1379 3.5064 32 1 2.3997 2.1436 5.5264 33 1 3.2081 -0.1807 5.4883 34 1 1.2195 -2.7366 2.9441 35 1 2.3409 -3.8989 3.6930 36 1 1.5655 -2.6433 4.6877 37 1 3.8556 -1.9116 5.3252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = -80.537351 kcal Electronic energy + Delta-G solvation = -18652.364816 eV Core-core repulsion = 15780.443784 eV Total energy + Delta-G solvation = -2871.921033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.10418 -37.80258 -36.48703 -33.53053 -32.05541 -31.16653 -29.89781 -28.63960 -27.48220 -23.73997 -23.52200 -22.37394 -20.98047 -19.83196 -18.03368 -16.57783 -16.38150 -15.90278 -15.05132 -14.66001 -14.58071 -14.46171 -14.07120 -13.76127 -13.13001 -12.84038 -12.63927 -12.01717 -11.90808 -11.83632 -11.75597 -11.67968 -11.43432 -11.12794 -10.89881 -10.72745 -10.64264 -10.44796 -10.13141 -9.84781 -9.39935 -9.13972 -8.63970 -8.39103 -7.71492 -6.02546 -4.04173 1.50821 1.73146 3.35430 3.38997 3.43680 3.85039 3.98566 4.46365 4.59156 4.83271 5.04796 5.18870 5.34206 5.37609 5.42879 5.51816 5.57149 5.65596 5.72513 5.79134 5.91747 5.96533 6.09300 6.18431 6.26681 6.33078 6.51335 6.57904 6.68317 6.71577 6.77897 7.03121 7.47439 7.56118 7.76222 7.93804 8.10334 8.34579 8.99372 9.59667 11.08717 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018998 B = 0.007094 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.456918 B = 3946.021874 C = 4432.692276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.027 3.973 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 O -0.288 6.288 14 C 0.159 3.841 15 C -0.214 4.214 16 C -0.083 4.083 17 C -0.172 4.172 18 C -0.079 4.079 19 C -0.158 4.158 20 C 0.150 3.850 21 H 0.120 0.880 22 C -0.173 4.173 23 O -0.558 6.558 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.262 0.738 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 4.048 14.456 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.010 4.010 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.203 1.203 13 O -0.201 6.201 14 C 0.111 3.889 15 C -0.232 4.232 16 C -0.101 4.101 17 C -0.190 4.190 18 C -0.097 4.097 19 C -0.159 4.159 20 C 0.091 3.909 21 H 0.137 0.863 22 C -0.231 4.231 23 O -0.364 6.364 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.103 3.569 13.700 15.049 hybrid contribution 0.516 0.552 0.222 0.788 sum -4.586 4.121 13.922 15.226 Atomic orbital electron populations 1.22414 0.96999 1.02601 1.01460 1.22892 0.91790 0.97178 0.85070 0.91964 1.19257 0.96587 0.96466 0.88705 1.21076 0.91649 1.34664 1.07998 0.92663 1.24962 0.98448 0.95173 0.95614 1.69933 1.35693 1.35869 1.12092 0.86662 0.85709 0.78266 0.77486 1.20031 1.21251 1.20261 1.86257 1.79676 1.38037 1.16091 1.18939 0.92635 0.90175 0.87120 1.21375 1.07225 0.94658 0.99963 1.20893 0.97617 0.99038 0.92532 1.20844 1.03836 0.95750 0.98608 1.20583 0.98389 0.94168 0.96544 1.19879 1.04968 0.98344 0.92751 1.20675 0.88102 0.89072 0.93008 0.86272 1.22401 0.98963 0.99782 1.01907 1.86666 1.39436 1.91863 1.18395 0.91913 0.91364 0.93312 0.95281 0.94391 0.92864 0.85127 0.86362 0.86491 0.86130 0.90969 0.91760 0.92933 0.78783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 9.17 37.16 0.34 -2.60 16 2 C 0.09 1.75 2.17 -26.73 -0.06 1.70 16 3 H 0.06 1.25 6.32 -51.93 -0.33 0.92 16 4 C 0.03 0.67 4.68 -27.89 -0.13 0.54 16 5 C -0.52 -14.55 8.88 -34.44 -0.31 -14.85 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 O -0.29 -5.95 8.69 -19.44 -0.17 -6.12 16 14 C 0.16 2.87 6.57 -39.22 -0.26 2.62 16 15 C -0.21 -3.43 8.24 -39.43 -0.32 -3.75 16 16 C -0.08 -1.13 10.04 -39.60 -0.40 -1.52 16 17 C -0.17 -2.21 10.04 -39.56 -0.40 -2.60 16 18 C -0.08 -1.07 9.30 -39.61 -0.37 -1.44 16 19 C -0.16 -2.58 5.08 -104.47 -0.53 -3.11 16 20 C 0.15 2.40 3.55 -27.88 -0.10 2.30 16 21 H 0.12 2.29 7.69 -51.93 -0.40 1.89 16 22 C -0.17 -2.36 9.52 37.16 0.35 -2.00 16 23 O -0.56 -8.26 12.99 -35.23 -0.46 -8.71 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.72 6.90 -51.93 -0.36 0.36 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.01 5.43 -52.49 -0.28 1.72 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.26 6.40 -52.49 -0.34 0.93 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.37 3.74 7.33 45.56 0.33 4.07 16 LS Contribution 307.75 15.07 4.64 4.64 Total: -1.00 -31.16 307.75 -7.27 -38.43 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.72 Total: 3.79 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.27 Total: -23.12 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.63 Total: -14.84 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.16 -7.27 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.109 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds