Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47197 * 2 1 4 4 C 1.52994 * 109.47558 * 239.99454 * 2 1 3 5 5 C 1.50697 * 109.47227 * 175.00093 * 4 2 1 6 6 H 1.07999 * 120.00155 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99810 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00257 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99732 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47025 * 60.00059 * 9 7 5 11 11 H 1.48499 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47010 * 299.99706 * 9 7 5 13 13 O 1.42905 * 109.47118 * 119.99410 * 2 1 3 14 14 C 1.35903 * 116.99932 * 275.18105 * 13 2 1 15 15 C 1.38754 * 120.05422 * 5.41408 * 14 13 2 16 16 C 1.38125 * 119.93919 * 180.02562 * 15 14 13 17 17 C 1.38288 * 120.05744 * 359.97421 * 16 15 14 18 18 C 1.38236 * 120.11266 * 0.02562 * 17 16 15 19 19 C 1.38169 * 120.05320 * 359.76504 * 18 17 16 20 20 C 1.50706 * 120.02527 * 180.25037 * 19 18 17 21 21 H 1.09002 * 109.47357 * 215.23082 * 20 19 18 22 22 C 1.53009 * 109.46749 * 95.23879 * 20 19 18 23 23 O 1.42897 * 109.47251 * 335.24015 * 20 19 18 24 24 H 1.09004 * 109.46501 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46743 * 60.00683 * 1 2 3 26 26 H 1.08991 * 109.47338 * 300.00618 * 1 2 3 27 27 H 1.09003 * 109.47232 * 294.99973 * 4 2 1 28 28 H 1.08999 * 109.47099 * 55.00145 * 4 2 1 29 29 H 0.96998 * 120.00177 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.03092 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.97124 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.93838 * 180.02562 * 17 16 15 33 33 H 1.08000 * 119.97187 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47123 * 59.99883 * 22 20 19 35 35 H 1.09000 * 109.46630 * 180.02562 * 22 20 19 36 36 H 1.09000 * 109.46982 * 299.99423 * 22 20 19 37 37 H 0.96691 * 114.00313 * 59.99935 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3125 6 1 4.0790 -0.0854 -0.5394 7 6 4.2305 -1.1928 -2.3581 8 7 3.5766 -1.8372 -3.2997 9 14 6.0921 -1.0603 -2.4370 10 1 6.6846 -1.6864 -1.2278 11 1 6.5872 -1.7606 -3.6494 12 1 6.4844 0.3706 -2.4964 13 8 2.0064 -0.6735 1.1669 14 6 2.1089 0.0619 2.3051 15 6 1.6537 1.3724 2.3291 16 6 1.7595 2.1179 3.4871 17 6 2.3182 1.5590 4.6219 18 6 2.7725 0.2536 4.6006 19 6 2.6649 -0.4977 3.4460 20 6 3.1553 -1.9226 3.4251 21 1 3.5760 -2.1477 2.4451 22 6 1.9862 -2.8684 3.7077 23 8 4.1603 -2.0952 4.4261 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 0.5139 0.8898 27 1 1.7518 -1.7716 -1.2054 28 1 1.6055 -0.2619 -2.1369 29 1 4.0610 -2.2440 -4.0351 30 1 1.2169 1.8091 1.4432 31 1 1.4050 3.1379 3.5064 32 1 2.3997 2.1436 5.5264 33 1 3.2081 -0.1807 5.4883 34 1 1.2195 -2.7366 2.9441 35 1 2.3409 -3.8989 3.6930 36 1 1.5655 -2.6433 4.6877 37 1 3.8556 -1.9116 5.3252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = -100.669197 kcal Electronic energy + Delta-G solvation = -18653.237799 eV Core-core repulsion = 15780.443784 eV Total energy + Delta-G solvation = -2872.794015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37188 -39.13857 -37.66853 -35.47835 -33.65934 -32.56213 -31.04408 -29.79277 -29.37887 -25.37145 -24.88595 -23.83300 -22.18349 -21.32955 -19.31961 -18.55280 -17.80762 -17.22635 -16.56933 -16.15305 -16.04045 -15.71546 -15.36683 -15.00814 -14.53034 -14.26983 -14.01638 -13.74991 -13.49610 -13.37430 -12.99153 -12.92639 -12.80417 -12.70811 -12.66057 -12.35259 -12.03640 -11.85267 -11.75113 -11.38304 -11.10784 -10.99910 -10.60939 -9.75973 -8.96512 -8.23884 -6.32587 0.39137 0.57719 1.35005 1.38134 1.45828 2.37400 2.46330 2.84567 3.10739 3.48391 3.68009 3.97799 4.00761 4.15940 4.20431 4.28056 4.28888 4.41229 4.47306 4.55658 4.71070 4.81074 4.84025 4.99127 4.99612 5.13526 5.16282 5.22328 5.34981 5.45055 5.51444 5.58227 5.61480 5.73771 5.99369 6.16596 6.68547 6.78948 6.83779 7.34881 8.87543 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018998 B = 0.007094 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.456918 B = 3946.021874 C = 4432.692276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.532 4.532 6 H 0.047 0.953 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.266 1.266 13 O -0.316 6.316 14 C 0.120 3.880 15 C -0.226 4.226 16 C -0.083 4.083 17 C -0.162 4.162 18 C -0.078 4.078 19 C -0.174 4.174 20 C 0.154 3.846 21 H 0.072 0.928 22 C -0.164 4.164 23 O -0.568 6.568 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.071 0.929 27 H -0.001 1.001 28 H 0.025 0.975 29 H 0.265 0.735 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 5.603 17.074 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.570 4.570 6 H 0.065 0.935 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.202 1.202 12 H -0.191 1.191 13 O -0.230 6.230 14 C 0.074 3.926 15 C -0.244 4.244 16 C -0.101 4.101 17 C -0.180 4.180 18 C -0.095 4.095 19 C -0.175 4.175 20 C 0.095 3.905 21 H 0.090 0.910 22 C -0.221 4.221 23 O -0.376 6.376 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.017 0.983 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.172 0.828 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.881 5.139 16.344 17.814 hybrid contribution 0.463 0.105 -0.460 0.661 sum -4.418 5.244 15.883 17.300 Atomic orbital electron populations 1.22295 0.94065 1.02792 1.03130 1.22555 0.93965 0.95934 0.83629 0.92005 1.19094 0.95327 0.95130 0.91123 1.21397 0.93347 1.34482 1.07731 0.93464 1.25800 1.03201 0.94828 0.95290 1.70041 1.37503 1.36652 1.12683 0.85664 0.80061 0.78790 0.77583 1.20111 1.20183 1.19084 1.86175 1.80866 1.39046 1.16918 1.19304 0.95202 0.91373 0.86745 1.21518 1.07587 0.94117 1.01215 1.21302 0.96831 1.00190 0.91747 1.21341 1.01552 0.95501 0.99557 1.21014 0.97593 0.94427 0.96507 1.20075 1.05377 0.98614 0.93400 1.20369 0.88576 0.90034 0.91513 0.90978 1.22305 0.97635 0.99418 1.02780 1.86616 1.39398 1.91983 1.19634 0.92467 0.90134 0.91046 0.98267 0.95692 0.92618 0.85175 0.83302 0.82718 0.82776 0.92711 0.91428 0.90127 0.76268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 9.17 71.98 0.66 -4.87 16 2 C 0.09 4.01 2.17 30.59 0.07 4.07 16 3 H 0.06 2.56 6.32 -2.38 -0.02 2.55 16 4 C 0.03 1.60 4.68 29.85 0.14 1.74 16 5 C -0.53 -31.19 8.88 25.60 0.23 -30.96 16 6 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 9 Si 0.95 46.08 29.54 68.60 2.03 48.10 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 O -0.32 -13.69 8.69 -92.46 -0.80 -14.49 16 14 C 0.12 4.37 6.57 22.50 0.15 4.51 16 15 C -0.23 -6.98 8.24 22.37 0.18 -6.80 16 16 C -0.08 -1.98 10.04 22.25 0.22 -1.76 16 17 C -0.16 -3.44 10.04 22.28 0.22 -3.21 16 18 C -0.08 -1.85 9.30 22.25 0.21 -1.64 16 19 C -0.17 -5.51 5.08 -19.77 -0.10 -5.62 16 20 C 0.15 4.99 3.55 29.85 0.11 5.09 16 21 H 0.07 2.99 7.69 -2.39 -0.02 2.97 16 22 C -0.16 -4.42 9.52 71.99 0.69 -3.74 16 23 O -0.57 -16.05 12.99 -148.98 -1.93 -17.99 16 24 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 26 H 0.07 2.05 6.90 -2.39 -0.02 2.03 16 27 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.13 3.90 5.43 -2.91 -0.02 3.89 16 31 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.15 2.51 6.40 -2.91 -0.02 2.50 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.39 6.77 7.33 -74.06 -0.54 6.23 16 Total: -1.00 -70.07 307.75 3.32 -66.75 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.52 Total: 16.51 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 3.23 Total: -42.30 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -2.74 Total: -32.48 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.07 3.32 -66.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.919 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds