Wall clock time and date at job start Mon Mar 30 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47123 * 2 1 4 4 C 1.35898 * 117.00189 * 180.02562 * 3 2 1 5 5 C 1.38792 * 120.02424 * 0.02562 * 4 3 2 6 6 C 1.38160 * 120.05135 * 179.97438 * 5 4 3 7 7 C 1.38191 * 120.11027 * 359.97438 * 6 5 4 8 8 C 1.38749 * 120.05823 * 0.02562 * 7 6 5 9 9 O 1.35895 * 120.03519 * 180.02562 * 8 7 6 10 10 C 1.42901 * 116.99365 * 5.45976 * 9 8 7 11 11 H 1.09004 * 109.47458 * 35.16387 * 10 9 8 12 12 C 1.52997 * 109.47472 * 275.15543 * 10 9 8 13 13 C 1.53001 * 109.46942 * 155.15700 * 10 9 8 14 14 C 1.50700 * 109.47055 * 295.00078 * 13 10 9 15 15 H 1.08002 * 120.00429 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00025 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00105 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47178 * 89.99922 * 18 16 14 20 20 H 1.48499 * 109.46978 * 210.00031 * 18 16 14 21 21 H 1.48507 * 109.46891 * 329.99548 * 18 16 14 22 22 C 1.38614 * 120.02865 * 180.02562 * 4 3 2 23 23 H 1.08995 * 109.47309 * 299.99664 * 1 2 3 24 24 H 1.08995 * 109.47223 * 60.00113 * 1 2 3 25 25 H 1.09005 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46879 * 240.00018 * 2 1 3 27 27 H 1.08996 * 109.46762 * 120.00149 * 2 1 3 28 28 H 1.07998 * 119.97352 * 0.02562 * 5 4 3 29 29 H 1.07996 * 119.94336 * 180.02562 * 6 5 4 30 30 H 1.08002 * 119.97180 * 180.28360 * 7 6 5 31 31 H 1.09002 * 109.47136 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.47102 * 300.00184 * 12 10 9 33 33 H 1.08998 * 109.46928 * 60.00276 * 12 10 9 34 34 H 1.08999 * 109.47377 * 54.99829 * 13 10 9 35 35 H 1.09002 * 109.47254 * 175.00172 * 13 10 9 36 36 H 0.96999 * 120.00481 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.05458 * 0.03726 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1996 0.4250 -0.0016 6 6 5.5693 0.6055 -0.0027 7 6 6.1006 1.8812 -0.0033 8 6 5.2591 2.9844 -0.0022 9 8 5.7820 4.2387 -0.0033 10 6 7.2013 4.3496 -0.1267 11 1 7.5717 3.5623 -0.7833 12 6 7.8459 4.2078 1.2536 13 6 7.5566 5.7155 -0.7175 14 6 7.0257 5.8075 -2.1249 15 1 6.4882 4.9752 -2.5548 16 6 7.2261 6.9542 -2.8638 17 7 7.8802 7.9679 -2.3402 18 14 6.5674 7.0686 -4.6080 19 1 5.1903 7.6238 -4.5817 20 1 7.4444 7.9580 -5.4110 21 1 6.5438 5.7147 -5.2179 22 6 3.8840 2.8060 0.0000 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7868 -0.5729 -0.0024 29 1 6.2260 -0.2519 -0.0039 30 1 7.1717 2.0196 -0.0087 31 1 8.9285 4.2929 1.1595 32 1 7.4757 4.9952 1.9102 33 1 7.5928 3.2348 1.6745 34 1 7.1105 6.5019 -0.1088 35 1 8.6400 5.8356 -0.7293 36 1 8.0209 8.7748 -2.8598 37 1 3.2274 3.6634 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695830446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:01 Heat of formation + Delta-G solvation = -66.650566 kcal Electronic energy + Delta-G solvation = -17922.180003 eV Core-core repulsion = 15050.861146 eV Total energy + Delta-G solvation = -2871.318857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.17861 -38.87713 -36.35797 -33.44280 -32.08069 -31.66261 -29.67540 -28.95731 -27.41953 -24.05364 -23.27109 -22.61196 -21.46204 -19.95118 -18.39029 -16.48330 -16.31009 -16.14662 -15.73955 -15.67309 -14.67064 -14.39665 -14.16395 -13.33447 -13.28460 -13.05984 -12.80657 -12.68048 -12.01067 -11.98778 -11.85964 -11.76943 -11.42267 -11.23835 -11.08352 -10.77398 -10.64453 -10.62470 -10.32929 -9.97725 -9.36388 -9.10429 -8.37484 -8.20079 -7.72523 -6.00422 -4.01705 1.63791 1.74172 3.07913 3.34955 3.40672 3.44776 4.01429 4.11765 4.47882 4.76198 4.80411 5.01270 5.05464 5.24821 5.30930 5.36870 5.42427 5.51204 5.60322 5.65852 5.76167 5.78161 5.83722 5.94280 6.16719 6.25459 6.45343 6.53983 6.62504 6.65382 6.75084 6.87283 7.47094 7.55025 7.61155 7.96287 8.15526 8.37653 9.02008 9.61763 11.11037 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.005165 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.826776 B = 5419.475568 C = 6237.651926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.316 6.316 4 C 0.163 3.837 5 C -0.261 4.261 6 C -0.044 4.044 7 C -0.249 4.249 8 C 0.189 3.811 9 O -0.287 6.287 10 C 0.086 3.914 11 H 0.064 0.936 12 C -0.178 4.178 13 C 0.025 3.975 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.197 4.197 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.039 0.961 36 H 0.261 0.739 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -16.340 6.204 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.230 6.230 4 C 0.118 3.882 5 C -0.280 4.280 6 C -0.062 4.062 7 C -0.268 4.268 8 C 0.141 3.859 9 O -0.199 6.199 10 C 0.031 3.969 11 H 0.082 0.918 12 C -0.235 4.235 13 C -0.012 4.012 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.217 4.217 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.263 -15.814 6.178 18.882 hybrid contribution -0.038 -0.229 -1.000 1.026 sum -8.302 -16.043 5.178 18.791 Atomic orbital electron populations 1.21778 0.92964 1.02608 1.03587 1.22732 0.95610 0.82262 1.01326 1.86046 1.19312 1.28971 1.88667 1.18493 0.81843 0.93289 0.94567 1.20955 0.94289 0.97458 1.15329 1.20629 0.94121 0.96431 0.95016 1.21298 1.00416 0.92441 1.12675 1.18783 0.91736 0.85222 0.90170 1.86278 1.25579 1.22795 1.85267 1.22914 0.76266 1.02744 0.95004 0.91774 1.22418 1.01294 1.01505 0.98301 1.19276 0.97220 0.88680 0.95976 1.21134 1.35284 1.00735 0.98119 0.92568 1.24972 0.95235 0.95705 0.98388 1.69946 1.41419 1.05004 1.37278 0.86578 0.78904 0.77970 0.84508 1.20566 1.21239 1.19882 1.19467 0.92870 0.95539 1.13805 0.91541 0.91486 0.90562 0.92107 0.92159 0.86078 0.86063 0.85045 0.91346 0.91895 0.93177 0.95248 0.94290 0.92942 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.54 10.13 -19.42 -0.20 -4.73 16 4 C 0.16 2.58 6.68 -39.24 -0.26 2.32 16 5 C -0.26 -3.62 9.04 -39.41 -0.36 -3.97 16 6 C -0.04 -0.61 10.04 -39.63 -0.40 -1.01 16 7 C -0.25 -4.12 8.23 -39.41 -0.32 -4.45 16 8 C 0.19 3.61 6.60 -39.24 -0.26 3.35 16 9 O -0.29 -6.30 9.55 -19.41 -0.19 -6.48 16 10 C 0.09 1.81 2.17 -26.73 -0.06 1.75 16 11 H 0.06 1.31 6.31 -51.93 -0.33 0.98 16 12 C -0.18 -3.04 9.17 37.16 0.34 -2.70 16 13 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 14 C -0.51 -14.72 8.88 -34.44 -0.31 -15.03 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 18 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.20 -3.57 9.93 -39.29 -0.39 -3.96 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.12 1.33 6.29 -52.49 -0.33 1.00 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 2.06 5.42 -52.49 -0.28 1.77 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.76 6.90 -51.93 -0.36 0.40 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -31.38 309.85 -7.10 -38.48 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.44 Total: -1.20 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -1.66 Total: -21.64 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.38 Total: -11.22 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.38 -7.10 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695830446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.173 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds