Wall clock time and date at job start Mon Mar 30 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47123 * 2 1 4 4 C 1.35898 * 117.00189 * 180.02562 * 3 2 1 5 5 C 1.38792 * 120.02424 * 0.02562 * 4 3 2 6 6 C 1.38160 * 120.05135 * 179.97438 * 5 4 3 7 7 C 1.38191 * 120.11027 * 359.97438 * 6 5 4 8 8 C 1.38749 * 120.05823 * 0.02562 * 7 6 5 9 9 O 1.35895 * 120.03519 * 180.02562 * 8 7 6 10 10 C 1.42901 * 116.99365 * 5.45976 * 9 8 7 11 11 H 1.09004 * 109.47458 * 35.16387 * 10 9 8 12 12 C 1.52997 * 109.47472 * 275.15543 * 10 9 8 13 13 C 1.53001 * 109.46942 * 155.15700 * 10 9 8 14 14 C 1.50700 * 109.47055 * 295.00078 * 13 10 9 15 15 H 1.08002 * 120.00429 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00025 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00105 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47178 * 89.99922 * 18 16 14 20 20 H 1.48499 * 109.46978 * 210.00031 * 18 16 14 21 21 H 1.48507 * 109.46891 * 329.99548 * 18 16 14 22 22 C 1.38614 * 120.02865 * 180.02562 * 4 3 2 23 23 H 1.08995 * 109.47309 * 299.99664 * 1 2 3 24 24 H 1.08995 * 109.47223 * 60.00113 * 1 2 3 25 25 H 1.09005 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46879 * 240.00018 * 2 1 3 27 27 H 1.08996 * 109.46762 * 120.00149 * 2 1 3 28 28 H 1.07998 * 119.97352 * 0.02562 * 5 4 3 29 29 H 1.07996 * 119.94336 * 180.02562 * 6 5 4 30 30 H 1.08002 * 119.97180 * 180.28360 * 7 6 5 31 31 H 1.09002 * 109.47136 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.47102 * 300.00184 * 12 10 9 33 33 H 1.08998 * 109.46928 * 60.00276 * 12 10 9 34 34 H 1.08999 * 109.47377 * 54.99829 * 13 10 9 35 35 H 1.09002 * 109.47254 * 175.00172 * 13 10 9 36 36 H 0.96999 * 120.00481 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.05458 * 0.03726 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1996 0.4250 -0.0016 6 6 5.5693 0.6055 -0.0027 7 6 6.1006 1.8812 -0.0033 8 6 5.2591 2.9844 -0.0022 9 8 5.7820 4.2387 -0.0033 10 6 7.2013 4.3496 -0.1267 11 1 7.5717 3.5623 -0.7833 12 6 7.8459 4.2078 1.2536 13 6 7.5566 5.7155 -0.7175 14 6 7.0257 5.8075 -2.1249 15 1 6.4882 4.9752 -2.5548 16 6 7.2261 6.9542 -2.8638 17 7 7.8802 7.9679 -2.3402 18 14 6.5674 7.0686 -4.6080 19 1 5.1903 7.6238 -4.5817 20 1 7.4444 7.9580 -5.4110 21 1 6.5438 5.7147 -5.2179 22 6 3.8840 2.8060 0.0000 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7868 -0.5729 -0.0024 29 1 6.2260 -0.2519 -0.0039 30 1 7.1717 2.0196 -0.0087 31 1 8.9285 4.2929 1.1595 32 1 7.4757 4.9952 1.9102 33 1 7.5928 3.2348 1.6745 34 1 7.1105 6.5019 -0.1088 35 1 8.6400 5.8356 -0.7293 36 1 8.0209 8.7748 -2.8598 37 1 3.2274 3.6634 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695830446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:01 Heat of formation + Delta-G solvation = -85.105620 kcal Electronic energy + Delta-G solvation = -17922.980274 eV Core-core repulsion = 15050.861146 eV Total energy + Delta-G solvation = -2872.119128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42670 -40.18010 -37.62781 -35.42992 -33.52220 -32.85508 -30.91170 -30.18849 -29.30048 -25.42740 -24.76069 -23.89974 -22.72609 -21.41679 -19.67316 -18.56600 -17.65779 -17.13327 -17.04122 -16.92072 -16.42783 -16.02152 -15.49290 -14.66145 -14.51566 -14.25818 -14.08534 -13.85731 -13.51707 -13.39450 -13.34148 -13.05048 -12.89457 -12.67811 -12.61039 -12.39752 -12.16819 -11.85355 -11.73736 -11.51270 -11.28342 -11.04017 -10.60250 -9.46566 -9.00393 -8.22511 -6.31523 0.41975 0.49527 1.36764 1.38787 1.49268 1.98432 2.39139 2.71946 2.82414 3.12309 3.85258 4.00845 4.09071 4.09582 4.17235 4.21565 4.23360 4.32743 4.40683 4.46510 4.58303 4.70589 4.83018 4.96045 4.96831 5.04485 5.17910 5.19842 5.31094 5.35332 5.36263 5.49163 5.51595 5.69411 5.75434 6.17581 6.46550 6.67886 6.80327 7.36019 8.89270 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.005165 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.826776 B = 5419.475568 C = 6237.651926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.162 3.838 5 C -0.249 4.249 6 C -0.034 4.034 7 C -0.257 4.257 8 C 0.158 3.842 9 O -0.322 6.322 10 C 0.094 3.906 11 H 0.069 0.931 12 C -0.167 4.167 13 C 0.028 3.972 14 C -0.533 4.533 15 H 0.049 0.951 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.266 1.266 22 C -0.226 4.226 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.073 0.927 34 H -0.003 1.003 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -19.490 5.843 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.249 6.249 4 C 0.117 3.883 5 C -0.268 4.268 6 C -0.052 4.052 7 C -0.276 4.276 8 C 0.111 3.889 9 O -0.235 6.235 10 C 0.038 3.962 11 H 0.087 0.913 12 C -0.224 4.224 13 C -0.009 4.009 14 C -0.571 4.571 15 H 0.068 0.932 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.783 3.217 19 H -0.203 1.203 20 H -0.200 1.200 21 H -0.190 1.190 22 C -0.245 4.245 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.176 0.824 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.016 0.984 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.742 -18.987 5.824 21.699 hybrid contribution -0.013 0.646 -0.858 1.074 sum -8.756 -18.340 4.966 20.921 Atomic orbital electron populations 1.21826 0.91561 1.04311 1.03011 1.23144 0.96825 0.80364 1.02733 1.86046 1.18533 1.32027 1.88333 1.18567 0.82938 0.92905 0.93932 1.21384 0.94056 0.98392 1.12922 1.21097 0.94833 0.96514 0.92766 1.21459 1.00490 0.92750 1.12924 1.19031 0.92431 0.84873 0.92548 1.86179 1.25692 1.25187 1.86459 1.22644 0.76773 0.99682 0.97068 0.91266 1.22315 1.01791 1.02555 0.95763 1.19131 0.96136 0.90909 0.94737 1.21468 1.35306 1.00765 0.99599 0.93248 1.25842 0.95426 0.95314 1.02720 1.70055 1.42429 1.05562 1.38983 0.85541 0.78279 0.78378 0.79452 1.20295 1.20030 1.19045 1.19546 0.92682 0.96512 1.15803 0.91979 0.92260 0.87657 0.90802 0.90419 0.82369 0.81989 0.84371 0.89768 0.92660 0.90795 0.98430 0.95321 0.92622 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.04 0.74 5.46 71.98 0.39 1.13 16 3 O -0.33 -9.22 10.13 -92.40 -0.94 -10.16 16 4 C 0.16 4.94 6.68 22.49 0.15 5.09 16 5 C -0.25 -6.02 9.04 22.38 0.20 -5.82 16 6 C -0.03 -0.84 10.04 22.24 0.22 -0.61 16 7 C -0.26 -8.12 8.23 22.38 0.18 -7.93 16 8 C 0.16 6.14 6.60 22.49 0.15 6.28 16 9 O -0.32 -14.71 9.55 -92.37 -0.88 -15.60 16 10 C 0.09 4.03 2.17 30.59 0.07 4.09 16 11 H 0.07 2.85 6.31 -2.39 -0.02 2.83 16 12 C -0.17 -5.66 9.17 71.98 0.66 -5.00 16 13 C 0.03 1.49 4.68 29.85 0.14 1.63 16 14 C -0.53 -31.48 8.88 25.60 0.23 -31.25 16 15 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 16 C 0.00 0.29 5.46 84.66 0.46 0.75 16 17 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 18 Si 0.96 45.94 29.54 68.60 2.03 47.96 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C -0.23 -8.41 9.93 22.46 0.22 -8.19 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 27 H 0.08 1.06 7.66 -2.39 -0.02 1.04 16 28 H 0.16 2.62 6.29 -2.91 -0.02 2.60 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.14 4.07 5.42 -2.91 -0.02 4.06 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.14 6.90 -2.39 -0.02 2.13 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -70.39 309.85 5.36 -65.03 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.04 Total: 10.68 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 3.82 Total: -41.06 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.28 Total: -56.87 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.82 Total: -25.75 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -70.39 5.36 -65.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695830446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.074 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds