Wall clock time and date at job start Mon Mar 30 2020 06:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47136 * 2 1 4 4 C 1.35895 * 116.99547 * 179.97438 * 3 2 1 5 5 C 1.38796 * 120.03303 * 0.32354 * 4 3 2 6 6 C 1.38153 * 120.05315 * 180.24918 * 5 4 3 7 7 C 1.38198 * 120.11223 * 359.44501 * 6 5 4 8 8 C 1.38754 * 120.05173 * 0.25930 * 7 6 5 9 9 O 1.35895 * 120.02869 * 180.02562 * 8 7 6 10 10 C 1.42911 * 116.99587 * 354.62396 * 9 8 7 11 11 H 1.09000 * 109.47094 * 324.76788 * 10 9 8 12 12 C 1.53003 * 109.46836 * 84.76781 * 10 9 8 13 13 C 1.53003 * 109.46916 * 204.76498 * 10 9 8 14 14 C 1.50697 * 109.46903 * 65.00503 * 13 10 9 15 15 H 1.08006 * 120.00497 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00058 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00116 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99682 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47167 * 90.00186 * 18 16 14 20 20 H 1.48496 * 109.47087 * 209.99999 * 18 16 14 21 21 H 1.48498 * 109.47006 * 330.00116 * 18 16 14 22 22 C 1.38620 * 120.02308 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.47109 * 60.00138 * 1 2 3 24 24 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47467 * 300.00417 * 1 2 3 26 26 H 1.09003 * 109.47467 * 239.99583 * 2 1 3 27 27 H 1.09004 * 109.47109 * 119.99862 * 2 1 3 28 28 H 1.07994 * 119.96984 * 359.97263 * 5 4 3 29 29 H 1.07995 * 119.94256 * 179.71994 * 6 5 4 30 30 H 1.07998 * 119.97430 * 180.27015 * 7 6 5 31 31 H 1.08994 * 109.47053 * 179.97438 * 12 10 9 32 32 H 1.08997 * 109.46853 * 299.99827 * 12 10 9 33 33 H 1.09000 * 109.47273 * 60.00116 * 12 10 9 34 34 H 1.08997 * 109.46908 * 184.99869 * 13 10 9 35 35 H 1.09002 * 109.46999 * 305.00293 * 13 10 9 36 36 H 0.97000 * 120.00002 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.05067 * 0.05658 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4250 -0.0057 6 6 5.5693 0.6054 0.0000 7 6 6.1006 1.8812 0.0004 8 6 5.2591 2.9843 0.0005 9 8 5.7820 4.2386 0.0004 10 6 7.2018 4.3495 0.1195 11 1 7.5739 3.5628 0.7758 12 6 7.8422 4.2062 -1.2626 13 6 7.5591 5.7160 0.7079 14 6 7.0324 5.8094 2.1167 15 1 6.4960 4.9776 2.5491 16 6 7.2351 6.9569 2.8538 17 7 6.7750 7.0386 4.0831 18 14 8.1633 8.3953 2.1063 19 1 7.2053 9.3011 1.4228 20 1 8.8692 9.1403 3.1795 21 1 9.1531 7.8880 1.1224 22 6 3.8841 2.8060 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7868 -0.5729 -0.0106 29 1 6.2259 -0.2520 -0.0003 30 1 7.1717 2.0196 0.0005 31 1 8.9251 4.2912 -1.1719 32 1 7.5877 3.2327 -1.6818 33 1 7.4702 4.9929 -1.9189 34 1 8.6424 5.8359 0.7164 35 1 7.1112 6.5018 0.0996 36 1 6.9180 7.8458 4.6018 37 1 3.2273 3.6633 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695830447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:04 Heat of formation + Delta-G solvation = -62.282432 kcal Electronic energy + Delta-G solvation = -17929.156363 eV Core-core repulsion = 15058.026923 eV Total energy + Delta-G solvation = -2871.129440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18343 -38.90752 -36.38533 -33.45730 -32.06839 -31.78300 -29.73127 -28.97646 -27.94412 -24.05438 -23.12369 -22.54340 -21.38365 -19.93243 -18.42494 -16.76851 -16.40033 -16.12664 -15.78249 -15.72441 -14.62584 -14.48046 -14.02586 -13.33515 -13.25718 -13.04949 -12.89065 -12.67314 -12.39383 -12.01082 -11.96346 -11.88365 -11.72664 -11.36402 -11.11300 -10.81366 -10.61359 -10.54251 -10.11900 -9.84173 -9.56870 -9.22222 -8.53301 -8.19396 -7.73926 -6.02137 -4.00328 1.64683 1.74346 3.08354 3.31782 3.38757 3.39802 3.98893 4.09066 4.45311 4.78392 4.82239 5.02250 5.07244 5.25499 5.31608 5.32252 5.39637 5.50664 5.54471 5.62544 5.63284 5.78108 5.81935 5.86959 6.08818 6.23384 6.40354 6.45212 6.52863 6.58355 6.70546 6.81436 7.06473 7.17685 7.55299 7.73307 8.09048 8.53345 9.03057 9.58205 11.11421 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.004793 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.448660 B = 5839.995558 C = 6407.884293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.315 6.315 4 C 0.164 3.836 5 C -0.260 4.260 6 C -0.044 4.044 7 C -0.249 4.249 8 C 0.189 3.811 9 O -0.287 6.287 10 C 0.095 3.905 11 H 0.070 0.930 12 C -0.181 4.181 13 C -0.011 4.011 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.195 4.195 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 -14.381 -10.501 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.229 6.229 4 C 0.119 3.881 5 C -0.279 4.279 6 C -0.062 4.062 7 C -0.268 4.268 8 C 0.141 3.859 9 O -0.199 6.199 10 C 0.039 3.961 11 H 0.088 0.912 12 C -0.238 4.238 13 C -0.048 4.048 14 C -0.554 4.554 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.214 4.214 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.799 -13.914 -10.357 18.289 hybrid contribution 0.723 0.444 -0.177 0.866 sum -5.076 -13.470 -10.534 17.837 Atomic orbital electron populations 1.21778 0.92954 1.02605 1.03603 1.22740 0.95628 0.82244 1.01331 1.86051 1.19269 1.28987 1.88637 1.18489 0.81881 0.93264 0.94503 1.20962 0.94285 0.97487 1.15157 1.20623 0.94137 0.96414 0.95021 1.21278 1.00322 0.92462 1.12721 1.18732 0.91754 0.84983 0.90390 1.86252 1.25070 1.23091 1.85490 1.22618 0.76787 1.01699 0.94950 0.91190 1.22454 1.01256 1.01873 0.98219 1.19743 0.96918 0.90781 0.97370 1.21019 1.35969 1.02547 0.95865 0.90857 1.24996 0.95363 0.98288 0.94715 1.69911 1.46330 1.28276 1.09475 0.86805 0.80574 0.82991 0.79062 1.20185 1.21350 1.19083 1.19461 0.92839 0.95591 1.13530 0.91566 0.90562 0.91439 0.92179 0.92059 0.86036 0.86030 0.85091 0.91327 0.92771 0.91904 0.94453 0.95742 0.92722 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.57 5.46 37.16 0.20 0.77 16 3 O -0.32 -4.60 10.14 -19.41 -0.20 -4.80 16 4 C 0.16 2.62 6.68 -39.23 -0.26 2.36 16 5 C -0.26 -3.63 9.04 -39.41 -0.36 -3.99 16 6 C -0.04 -0.62 10.04 -39.63 -0.40 -1.01 16 7 C -0.25 -4.10 8.23 -39.41 -0.32 -4.43 16 8 C 0.19 3.62 6.60 -39.24 -0.26 3.36 16 9 O -0.29 -6.21 9.55 -19.41 -0.19 -6.40 16 10 C 0.10 1.92 2.17 -26.73 -0.06 1.87 16 11 H 0.07 1.40 6.32 -51.93 -0.33 1.07 16 12 C -0.18 -2.88 9.17 37.16 0.34 -2.54 16 13 C -0.01 -0.26 3.75 -27.88 -0.10 -0.37 16 14 C -0.52 -14.91 9.43 -34.44 -0.32 -15.24 16 15 H 0.07 2.33 7.99 -52.48 -0.42 1.91 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 18 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 22 C -0.19 -3.56 9.93 -39.29 -0.39 -3.95 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 27 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 28 H 0.12 1.35 6.29 -52.49 -0.33 1.01 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.13 2.01 5.41 -52.49 -0.28 1.73 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.78 6.89 -51.93 -0.36 0.42 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.86 7.20 -51.93 -0.37 0.48 16 35 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 306.24 15.07 4.61 4.61 Total: -1.00 -32.32 306.24 -6.72 -39.04 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.41 Total: 0.01 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.65 Total: -22.11 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.77 Total: -27.39 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.38 Total: -11.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.32 -6.72 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695830447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.241 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds