Wall clock time and date at job start Mon Mar 30 2020 06:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47136 * 2 1 4 4 C 1.35895 * 116.99547 * 179.97438 * 3 2 1 5 5 C 1.38796 * 120.03303 * 0.32354 * 4 3 2 6 6 C 1.38153 * 120.05315 * 180.24918 * 5 4 3 7 7 C 1.38198 * 120.11223 * 359.44501 * 6 5 4 8 8 C 1.38754 * 120.05173 * 0.25930 * 7 6 5 9 9 O 1.35895 * 120.02869 * 180.02562 * 8 7 6 10 10 C 1.42911 * 116.99587 * 354.62396 * 9 8 7 11 11 H 1.09000 * 109.47094 * 324.76788 * 10 9 8 12 12 C 1.53003 * 109.46836 * 84.76781 * 10 9 8 13 13 C 1.53003 * 109.46916 * 204.76498 * 10 9 8 14 14 C 1.50697 * 109.46903 * 65.00503 * 13 10 9 15 15 H 1.08006 * 120.00497 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00058 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00116 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99682 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47167 * 90.00186 * 18 16 14 20 20 H 1.48496 * 109.47087 * 209.99999 * 18 16 14 21 21 H 1.48498 * 109.47006 * 330.00116 * 18 16 14 22 22 C 1.38620 * 120.02308 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.47109 * 60.00138 * 1 2 3 24 24 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47467 * 300.00417 * 1 2 3 26 26 H 1.09003 * 109.47467 * 239.99583 * 2 1 3 27 27 H 1.09004 * 109.47109 * 119.99862 * 2 1 3 28 28 H 1.07994 * 119.96984 * 359.97263 * 5 4 3 29 29 H 1.07995 * 119.94256 * 179.71994 * 6 5 4 30 30 H 1.07998 * 119.97430 * 180.27015 * 7 6 5 31 31 H 1.08994 * 109.47053 * 179.97438 * 12 10 9 32 32 H 1.08997 * 109.46853 * 299.99827 * 12 10 9 33 33 H 1.09000 * 109.47273 * 60.00116 * 12 10 9 34 34 H 1.08997 * 109.46908 * 184.99869 * 13 10 9 35 35 H 1.09002 * 109.46999 * 305.00293 * 13 10 9 36 36 H 0.97000 * 120.00002 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.05067 * 0.05658 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4250 -0.0057 6 6 5.5693 0.6054 0.0000 7 6 6.1006 1.8812 0.0004 8 6 5.2591 2.9843 0.0005 9 8 5.7820 4.2386 0.0004 10 6 7.2018 4.3495 0.1195 11 1 7.5739 3.5628 0.7758 12 6 7.8422 4.2062 -1.2626 13 6 7.5591 5.7160 0.7079 14 6 7.0324 5.8094 2.1167 15 1 6.4960 4.9776 2.5491 16 6 7.2351 6.9569 2.8538 17 7 6.7750 7.0386 4.0831 18 14 8.1633 8.3953 2.1063 19 1 7.2053 9.3011 1.4228 20 1 8.8692 9.1403 3.1795 21 1 9.1531 7.8880 1.1224 22 6 3.8841 2.8060 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7868 -0.5729 -0.0106 29 1 6.2259 -0.2520 -0.0003 30 1 7.1717 2.0196 0.0005 31 1 8.9251 4.2912 -1.1719 32 1 7.5877 3.2327 -1.6818 33 1 7.4702 4.9929 -1.9189 34 1 8.6424 5.8359 0.7164 35 1 7.1112 6.5018 0.0996 36 1 6.9180 7.8458 4.6018 37 1 3.2273 3.6633 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695830447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:03 Heat of formation + Delta-G solvation = -82.661563 kcal Electronic energy + Delta-G solvation = -17930.040069 eV Core-core repulsion = 15058.026923 eV Total energy + Delta-G solvation = -2872.013146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44156 -40.19924 -37.64971 -35.37923 -33.69189 -32.88008 -30.99096 -30.24435 -29.67691 -25.26347 -24.61755 -23.88416 -22.68494 -21.40253 -19.71371 -18.93921 -17.68033 -17.17037 -17.05610 -16.94347 -16.29107 -16.04136 -15.46999 -14.78649 -14.53065 -14.32223 -14.16628 -14.05749 -13.64581 -13.53477 -13.35260 -13.05120 -12.90940 -12.66961 -12.50333 -12.24493 -11.90855 -11.82299 -11.71437 -11.56755 -11.32482 -11.19483 -10.77630 -9.47953 -9.01769 -8.28577 -6.33158 0.40559 0.48127 1.36411 1.38836 1.49865 1.97052 2.36275 2.69700 2.81196 3.08142 3.83500 3.97999 4.07448 4.08139 4.14772 4.18761 4.19396 4.31272 4.39554 4.43958 4.56780 4.69668 4.83233 4.93640 4.95256 4.98641 5.07988 5.17840 5.21976 5.26786 5.31501 5.42626 5.48692 5.60939 5.67352 6.24278 6.45164 6.63725 6.74105 7.29483 8.88981 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.004793 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.448660 B = 5839.995558 C = 6407.884293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.162 3.838 5 C -0.249 4.249 6 C -0.035 4.035 7 C -0.257 4.257 8 C 0.158 3.842 9 O -0.323 6.323 10 C 0.094 3.906 11 H 0.065 0.935 12 C -0.168 4.168 13 C -0.011 4.011 14 C -0.526 4.526 15 H 0.022 0.978 16 C 0.001 3.999 17 N -0.954 5.954 18 Si 0.955 3.045 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.235 1.235 22 C -0.228 4.228 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -16.168 -12.432 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.116 3.884 5 C -0.268 4.268 6 C -0.053 4.053 7 C -0.276 4.276 8 C 0.112 3.888 9 O -0.236 6.236 10 C 0.039 3.961 11 H 0.083 0.917 12 C -0.225 4.225 13 C -0.048 4.048 14 C -0.564 4.564 15 H 0.040 0.960 16 C -0.195 4.195 17 N -0.595 5.595 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.158 1.158 22 C -0.247 4.247 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.158 0.842 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.623 -15.734 -12.309 20.505 hybrid contribution 0.177 0.828 0.491 0.979 sum -4.446 -14.906 -11.818 19.535 Atomic orbital electron populations 1.21827 0.91518 1.04344 1.03005 1.23155 0.96867 0.80337 1.02735 1.86049 1.18529 1.32078 1.88327 1.18580 0.82973 0.92922 0.93923 1.21388 0.94094 0.98379 1.12923 1.21111 0.94828 0.96583 0.92760 1.21470 1.00524 0.92712 1.12900 1.19002 0.92388 0.84910 0.92516 1.86157 1.25773 1.25183 1.86513 1.22554 0.76902 0.99277 0.97410 0.91717 1.22349 1.02108 1.02936 0.95158 1.19720 0.97625 0.93283 0.94173 1.21311 1.35370 1.01156 0.98539 0.95955 1.26069 0.96536 1.01850 0.95045 1.70087 1.48395 1.29523 1.11466 0.85601 0.79566 0.78379 0.78738 1.19714 1.20834 1.15843 1.19559 0.92807 0.96511 1.15838 0.91891 0.87586 0.92364 0.90270 0.90927 0.82326 0.81896 0.84170 0.89048 0.91042 0.91838 0.92523 0.95784 0.92523 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.04 0.78 5.46 71.98 0.39 1.17 16 3 O -0.34 -9.67 10.14 -92.37 -0.94 -10.61 16 4 C 0.16 5.14 6.68 22.49 0.15 5.29 16 5 C -0.25 -6.30 9.04 22.38 0.20 -6.10 16 6 C -0.04 -0.89 10.04 22.24 0.22 -0.66 16 7 C -0.26 -8.28 8.23 22.38 0.18 -8.09 16 8 C 0.16 6.29 6.60 22.49 0.15 6.44 16 9 O -0.32 -14.62 9.55 -92.37 -0.88 -15.50 16 10 C 0.09 3.82 2.17 30.60 0.07 3.89 16 11 H 0.06 2.63 6.32 -2.39 -0.02 2.61 16 12 C -0.17 -5.03 9.17 71.98 0.66 -4.37 16 13 C -0.01 -0.52 3.75 29.85 0.11 -0.41 16 14 C -0.53 -31.58 9.43 25.60 0.24 -31.34 16 15 H 0.02 1.51 7.99 -2.91 -0.02 1.49 16 16 C 0.00 0.07 5.47 84.66 0.46 0.54 16 17 N -0.95 -61.94 13.96 21.45 0.30 -61.64 16 18 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 22 C -0.23 -8.80 9.93 22.46 0.22 -8.58 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.08 1.14 7.65 -2.39 -0.02 1.12 16 27 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 28 H 0.16 2.79 6.29 -2.91 -0.02 2.77 16 29 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.14 4.13 5.41 -2.91 -0.02 4.12 16 31 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 1.88 6.89 -2.39 -0.02 1.87 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.47 7.20 -2.39 -0.02 2.45 16 35 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 36 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 37 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -74.85 306.24 5.16 -69.69 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.99 Total: 14.99 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 3.81 Total: -43.59 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.30 Total: -61.64 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.82 Total: -26.11 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -74.85 5.16 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695830447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.970 kcal (2) G-P(sol) polarization free energy of solvation -74.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds