Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.53003 * 109.47485 * 120.00097 * 2 1 3 5 5 C 1.50696 * 109.47422 * 184.99944 * 4 2 1 6 6 H 1.07998 * 120.00016 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99957 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00022 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00047 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47263 * 89.99874 * 9 7 5 11 11 H 1.48502 * 109.47316 * 209.99810 * 9 7 5 12 12 H 1.48498 * 109.47145 * 330.00182 * 9 7 5 13 13 O 1.42898 * 109.47290 * 240.00597 * 2 1 3 14 14 C 1.35895 * 117.00367 * 84.91823 * 13 2 1 15 15 C 1.38733 * 120.05628 * 174.29001 * 14 13 2 16 16 C 1.38153 * 119.94284 * 179.70187 * 15 14 13 17 17 C 1.38264 * 120.05228 * 0.58873 * 16 15 14 18 18 C 1.50702 * 119.93995 * 179.70177 * 17 16 15 19 19 C 1.53002 * 109.47193 * 269.98254 * 18 17 16 20 20 O 1.42900 * 109.47106 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.11231 * 359.68820 * 17 16 15 22 22 C 1.38143 * 120.05889 * 0.02562 * 21 17 16 23 23 H 1.08998 * 109.46562 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47164 * 299.99609 * 1 2 3 25 25 H 1.08999 * 109.46864 * 59.99668 * 1 2 3 26 26 H 1.09000 * 109.46897 * 305.00357 * 4 2 1 27 27 H 1.09002 * 109.46837 * 64.99821 * 4 2 1 28 28 H 0.97008 * 119.99950 * 179.97438 * 8 7 5 29 29 H 1.08002 * 120.02998 * 359.97438 * 15 14 13 30 30 H 1.08001 * 119.97139 * 180.27104 * 16 15 14 31 31 H 1.08996 * 109.47161 * 29.98148 * 18 17 16 32 32 H 1.08999 * 109.46857 * 149.98287 * 18 17 16 33 33 H 1.09003 * 109.47212 * 299.99644 * 19 18 17 34 34 H 1.08994 * 109.47638 * 60.00207 * 19 18 17 35 35 H 0.96704 * 114.00154 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.97118 * 179.97438 * 21 17 16 37 37 H 1.07998 * 120.03107 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8379 3.2994 9 14 6.0921 -1.0612 2.4367 10 1 6.4699 0.1609 3.1911 11 1 6.6448 -2.2568 3.1226 12 1 6.6417 -0.9823 1.0595 13 8 2.0064 -0.6735 -1.1668 14 6 2.1110 0.0623 -2.3045 15 6 2.6768 -0.4942 -3.4424 16 6 2.7763 0.2540 -4.5995 17 6 2.3237 1.5603 -4.6206 18 6 2.4396 2.3762 -5.8823 19 6 3.7817 3.1110 -5.8929 20 8 3.8914 3.8852 -7.0890 21 6 1.7646 2.1190 -3.4862 22 6 1.6574 1.3732 -2.3283 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6055 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2055 28 1 4.0610 -2.2453 4.0344 29 1 3.0352 -1.5129 -3.4250 30 1 3.2128 -0.1802 -5.4869 31 1 2.3795 1.7170 -6.7481 32 1 1.6276 3.1023 -5.9212 33 1 3.8418 3.7703 -5.0270 34 1 4.5937 2.3850 -5.8539 35 1 4.7193 4.3793 -7.1632 36 1 1.4121 3.1397 -3.5050 37 1 1.2210 1.8102 -1.4423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695833431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = -84.896736 kcal Electronic energy + Delta-G solvation = -17787.049324 eV Core-core repulsion = 14914.939254 eV Total energy + Delta-G solvation = -2872.110070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87708 -37.89951 -36.74409 -33.65131 -32.39555 -31.47996 -30.61497 -27.71832 -27.39926 -23.67404 -22.98763 -22.82588 -20.97784 -19.81353 -17.84679 -17.50715 -16.39545 -15.85487 -15.04904 -14.92852 -14.56277 -14.46899 -14.26070 -14.09673 -13.36753 -13.06470 -12.71998 -12.18439 -12.07078 -11.92196 -11.66468 -11.50024 -11.45956 -11.21398 -10.97023 -10.75249 -10.62194 -10.37438 -10.13745 -9.98317 -9.39598 -9.12701 -8.76155 -8.40691 -7.66178 -6.03554 -4.05030 1.58046 1.66978 3.30873 3.37273 3.42091 3.83785 3.97158 4.20433 4.44463 4.83520 5.03289 5.13056 5.17179 5.20946 5.33606 5.43029 5.50981 5.59849 5.64733 5.71388 5.79804 5.91043 5.94959 6.02372 6.20210 6.26029 6.52513 6.54692 6.65239 6.78709 6.79976 7.05379 7.40226 7.47965 7.57444 7.92943 8.14465 8.34691 8.98604 9.58443 11.07887 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023649 B = 0.004860 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.706050 B = 5759.905077 C = 6513.019195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.025 3.975 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.291 6.291 14 C 0.153 3.847 15 C -0.161 4.161 16 C -0.075 4.075 17 C -0.145 4.145 18 C -0.068 4.068 19 C 0.078 3.922 20 O -0.579 6.579 21 C -0.074 4.074 22 C -0.214 4.214 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.379 0.621 36 H 0.118 0.882 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 8.295 -15.267 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 O -0.203 6.203 14 C 0.105 3.895 15 C -0.180 4.180 16 C -0.093 4.093 17 C -0.146 4.146 18 C -0.105 4.105 19 C 0.001 3.999 20 O -0.385 6.385 21 C -0.092 4.092 22 C -0.233 4.233 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.136 0.864 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.055 7.720 -15.146 17.273 hybrid contribution 1.521 0.425 0.451 1.642 sum -1.534 8.145 -14.696 16.872 Atomic orbital electron populations 1.22414 0.96996 1.02630 1.01456 1.22879 0.91832 0.97112 0.85129 0.91970 1.19270 0.96590 0.96514 0.88767 1.21118 0.91695 1.34491 1.07960 0.92629 1.24974 0.98481 0.95207 0.95653 1.69951 1.35595 1.35941 1.12117 0.86581 0.85679 0.77528 0.78193 1.20674 1.21150 1.19837 1.86282 1.79689 1.38106 1.16227 1.19270 0.92304 0.90220 0.87696 1.20465 1.04534 1.01476 0.91508 1.20754 0.98114 0.93340 0.97104 1.19404 1.04902 0.95024 0.95256 1.20294 0.96631 0.98102 0.95481 1.22244 0.97703 0.93649 0.86336 1.86442 1.43954 1.65495 1.42570 1.20758 0.97585 0.98913 0.91922 1.21369 1.07381 0.94775 0.99776 0.91904 0.91376 0.93275 0.94371 0.95275 0.92921 0.85306 0.85978 0.90771 0.90824 0.93473 0.93425 0.77476 0.86391 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.17 37.16 0.34 -2.67 16 2 C 0.09 1.78 2.17 -26.73 -0.06 1.72 16 3 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 4 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 5 C -0.51 -14.55 8.88 -34.44 -0.31 -14.85 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 O -0.29 -6.23 9.55 -19.41 -0.19 -6.41 16 14 C 0.15 2.79 6.60 -39.22 -0.26 2.53 16 15 C -0.16 -2.61 9.99 -39.43 -0.39 -3.01 16 16 C -0.08 -1.02 9.69 -39.60 -0.38 -1.40 16 17 C -0.15 -1.88 5.13 -104.60 -0.54 -2.42 16 18 C -0.07 -0.74 5.71 -27.88 -0.16 -0.89 16 19 C 0.08 0.79 7.03 37.16 0.26 1.05 16 20 O -0.58 -5.72 13.66 -35.23 -0.48 -6.20 16 21 C -0.07 -1.01 9.69 -39.61 -0.38 -1.39 16 22 C -0.21 -3.44 8.24 -39.43 -0.33 -3.76 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.38 2.02 9.12 45.56 0.42 2.43 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.13 2.01 5.43 -52.49 -0.28 1.72 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -31.65 312.83 -7.41 -39.06 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.74 Total: 1.03 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -2.43 Total: -23.02 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.67 Total: -12.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.65 -7.41 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.832 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds