Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.53003 * 109.47485 * 120.00097 * 2 1 3 5 5 C 1.50696 * 109.47422 * 184.99944 * 4 2 1 6 6 H 1.07998 * 120.00016 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99957 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00022 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00047 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47263 * 89.99874 * 9 7 5 11 11 H 1.48502 * 109.47316 * 209.99810 * 9 7 5 12 12 H 1.48498 * 109.47145 * 330.00182 * 9 7 5 13 13 O 1.42898 * 109.47290 * 240.00597 * 2 1 3 14 14 C 1.35895 * 117.00367 * 84.91823 * 13 2 1 15 15 C 1.38733 * 120.05628 * 174.29001 * 14 13 2 16 16 C 1.38153 * 119.94284 * 179.70187 * 15 14 13 17 17 C 1.38264 * 120.05228 * 0.58873 * 16 15 14 18 18 C 1.50702 * 119.93995 * 179.70177 * 17 16 15 19 19 C 1.53002 * 109.47193 * 269.98254 * 18 17 16 20 20 O 1.42900 * 109.47106 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.11231 * 359.68820 * 17 16 15 22 22 C 1.38143 * 120.05889 * 0.02562 * 21 17 16 23 23 H 1.08998 * 109.46562 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47164 * 299.99609 * 1 2 3 25 25 H 1.08999 * 109.46864 * 59.99668 * 1 2 3 26 26 H 1.09000 * 109.46897 * 305.00357 * 4 2 1 27 27 H 1.09002 * 109.46837 * 64.99821 * 4 2 1 28 28 H 0.97008 * 119.99950 * 179.97438 * 8 7 5 29 29 H 1.08002 * 120.02998 * 359.97438 * 15 14 13 30 30 H 1.08001 * 119.97139 * 180.27104 * 16 15 14 31 31 H 1.08996 * 109.47161 * 29.98148 * 18 17 16 32 32 H 1.08999 * 109.46857 * 149.98287 * 18 17 16 33 33 H 1.09003 * 109.47212 * 299.99644 * 19 18 17 34 34 H 1.08994 * 109.47638 * 60.00207 * 19 18 17 35 35 H 0.96704 * 114.00154 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.97118 * 179.97438 * 21 17 16 37 37 H 1.07998 * 120.03107 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8379 3.2994 9 14 6.0921 -1.0612 2.4367 10 1 6.4699 0.1609 3.1911 11 1 6.6448 -2.2568 3.1226 12 1 6.6417 -0.9823 1.0595 13 8 2.0064 -0.6735 -1.1668 14 6 2.1110 0.0623 -2.3045 15 6 2.6768 -0.4942 -3.4424 16 6 2.7763 0.2540 -4.5995 17 6 2.3237 1.5603 -4.6206 18 6 2.4396 2.3762 -5.8823 19 6 3.7817 3.1110 -5.8929 20 8 3.8914 3.8852 -7.0890 21 6 1.7646 2.1190 -3.4862 22 6 1.6574 1.3732 -2.3283 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6055 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2055 28 1 4.0610 -2.2453 4.0344 29 1 3.0352 -1.5129 -3.4250 30 1 3.2128 -0.1802 -5.4869 31 1 2.3795 1.7170 -6.7481 32 1 1.6276 3.1023 -5.9212 33 1 3.8418 3.7703 -5.0270 34 1 4.5937 2.3850 -5.8539 35 1 4.7193 4.3793 -7.1632 36 1 1.4121 3.1397 -3.5050 37 1 1.2210 1.8102 -1.4423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695833431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -105.438953 kcal Electronic energy + Delta-G solvation = -17787.940101 eV Core-core repulsion = 14914.939254 eV Total energy + Delta-G solvation = -2873.000847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18080 -39.10270 -37.61717 -35.52700 -33.84028 -32.90548 -31.84121 -29.39445 -28.67093 -25.36580 -24.30152 -23.99122 -22.21665 -21.23451 -19.15715 -18.54194 -18.35670 -17.11669 -16.50135 -16.12489 -16.04369 -15.80208 -15.32738 -15.10442 -14.77357 -14.31202 -14.24265 -13.77270 -13.62225 -13.40066 -13.17745 -12.85421 -12.66857 -12.60578 -12.41322 -12.31707 -12.16908 -11.77853 -11.63935 -11.27921 -11.04648 -10.85653 -10.60367 -9.91002 -8.93076 -8.22816 -6.32158 0.42938 0.49112 1.36899 1.38444 1.49685 2.38821 2.47579 2.80172 3.11785 3.41141 3.87982 3.96001 4.06932 4.18354 4.19354 4.23186 4.39481 4.41719 4.47106 4.54481 4.63496 4.70933 4.84798 4.96340 5.00592 5.12655 5.16359 5.16999 5.34841 5.37813 5.49187 5.53417 5.69479 5.74454 5.96643 6.17259 6.71075 6.80016 6.89670 7.35561 8.88975 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023649 B = 0.004860 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.706050 B = 5759.905077 C = 6513.019195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.532 4.532 6 H 0.050 0.950 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.271 1.271 13 O -0.324 6.324 14 C 0.114 3.886 15 C -0.176 4.176 16 C -0.071 4.071 17 C -0.132 4.132 18 C -0.066 4.066 19 C 0.080 3.920 20 O -0.593 6.593 21 C -0.073 4.073 22 C -0.220 4.220 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.025 0.975 27 H -0.002 1.002 28 H 0.265 0.735 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.398 0.602 36 H 0.146 0.854 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 9.992 -17.208 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.570 4.570 6 H 0.068 0.932 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.195 1.195 13 O -0.238 6.238 14 C 0.068 3.932 15 C -0.195 4.195 16 C -0.089 4.089 17 C -0.133 4.133 18 C -0.103 4.103 19 C 0.002 3.998 20 O -0.401 6.401 21 C -0.091 4.091 22 C -0.239 4.239 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.016 0.984 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.248 0.752 36 H 0.164 0.836 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.394 9.439 -17.106 19.684 hybrid contribution 1.325 -0.057 0.920 1.614 sum -1.070 9.382 -16.186 18.739 Atomic orbital electron populations 1.22308 0.94147 1.02769 1.03191 1.22573 0.93957 0.96042 0.83554 0.91683 1.19120 0.95555 0.95084 0.91123 1.21447 0.93258 1.34478 1.07861 0.93190 1.25860 1.03538 0.94743 0.95226 1.70066 1.37577 1.36716 1.12745 0.85518 0.79607 0.78054 0.78327 1.19333 1.20470 1.19526 1.86183 1.80995 1.39367 1.17206 1.19595 0.94957 0.91446 0.87220 1.20655 1.04921 1.01856 0.92050 1.21064 0.97381 0.93469 0.96956 1.19709 1.02849 0.94832 0.95877 1.20303 0.97513 0.98187 0.94316 1.22160 0.97173 0.93812 0.86615 1.86388 1.45648 1.65779 1.42323 1.21086 0.96914 0.99932 0.91149 1.21469 1.07448 0.94076 1.00887 0.92578 0.89996 0.91043 0.95644 0.98399 0.92635 0.85728 0.83184 0.90007 0.90079 0.93259 0.93181 0.75246 0.83635 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 9.17 71.98 0.66 -4.99 16 2 C 0.09 4.01 2.17 30.60 0.07 4.08 16 3 H 0.07 2.67 6.31 -2.39 -0.02 2.66 16 4 C 0.03 1.50 4.68 29.85 0.14 1.64 16 5 C -0.53 -30.97 8.88 25.60 0.23 -30.74 16 6 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 9 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 O -0.32 -14.32 9.55 -92.37 -0.88 -15.21 16 14 C 0.11 4.18 6.60 22.51 0.15 4.33 16 15 C -0.18 -5.66 9.99 22.37 0.22 -5.44 16 16 C -0.07 -1.77 9.69 22.26 0.22 -1.55 16 17 C -0.13 -3.05 5.13 -19.85 -0.10 -3.15 16 18 C -0.07 -1.20 5.71 29.85 0.17 -1.03 16 19 C 0.08 1.36 7.03 71.98 0.51 1.87 16 20 O -0.59 -9.85 13.66 -148.98 -2.04 -11.88 16 21 C -0.07 -1.81 9.69 22.25 0.22 -1.59 16 22 C -0.22 -6.83 8.24 22.37 0.18 -6.65 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.07 2.08 6.91 -2.39 -0.02 2.07 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 29 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 32 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.40 3.06 9.12 -74.05 -0.68 2.38 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.13 3.94 5.43 -2.91 -0.02 3.93 16 Total: -1.00 -69.12 312.83 2.89 -66.23 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.38 Total: 12.65 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 3.12 Total: -42.53 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -2.92 Total: -27.09 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.12 2.89 -66.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695833431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.214 kcal (2) G-P(sol) polarization free energy of solvation -69.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds