Wall clock time and date at job start Mon Mar 30 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47152 * 2 1 4 4 C 1.35985 * 116.99800 * 179.97438 * 3 2 1 5 5 C 1.38698 * 119.99620 * 179.97438 * 4 3 2 6 6 C 1.38132 * 119.99664 * 180.02562 * 5 4 3 7 7 C 1.38701 * 120.00051 * 0.02562 * 6 5 4 8 8 O 1.35986 * 119.99626 * 179.97438 * 7 6 5 9 9 C 1.42894 * 117.00299 * 5.36475 * 8 7 6 10 10 H 1.08998 * 109.47070 * 35.24113 * 9 8 7 11 11 C 1.53003 * 109.46955 * 275.23976 * 9 8 7 12 12 C 1.52996 * 109.47369 * 155.24104 * 9 8 7 13 13 C 1.50702 * 109.47019 * 294.99886 * 12 9 8 14 14 H 1.07997 * 119.99789 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99695 * 179.97438 * 13 12 9 16 16 N 1.31510 * 120.00504 * 359.72747 * 15 13 12 17 17 Si 1.86800 * 119.99816 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47547 * 179.72679 * 17 15 13 19 19 H 1.48503 * 109.47454 * 299.72741 * 17 15 13 20 20 H 1.48497 * 109.47306 * 59.72714 * 17 15 13 21 21 C 1.38702 * 119.99885 * 0.24436 * 7 6 5 22 22 C 1.38127 * 119.99680 * 359.49811 * 21 7 6 23 23 H 1.08997 * 109.47390 * 300.00369 * 1 2 3 24 24 H 1.09003 * 109.46895 * 60.00537 * 1 2 3 25 25 H 1.09002 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47390 * 239.99631 * 2 1 3 27 27 H 1.09003 * 109.46895 * 119.99463 * 2 1 3 28 28 H 1.08000 * 120.00385 * 0.02562 * 5 4 3 29 29 H 1.07998 * 119.99702 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46943 * 60.00175 * 11 9 8 31 31 H 1.08999 * 109.46937 * 179.97438 * 11 9 8 32 32 H 1.08998 * 109.47343 * 299.99970 * 11 9 8 33 33 H 1.08995 * 109.47688 * 174.99619 * 12 9 8 34 34 H 1.08999 * 109.47298 * 54.99699 * 12 9 8 35 35 H 0.96999 * 119.99912 * 0.27365 * 16 15 13 36 36 H 1.07996 * 119.99375 * 179.73349 * 21 7 6 37 37 H 1.08003 * 119.99525 * 180.23021 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5254 0.0005 5 6 3.8846 2.8071 0.0000 6 6 5.2540 2.9881 0.0001 7 6 6.0989 1.8881 0.0000 8 8 7.4470 2.0663 -0.0005 9 6 7.9241 3.4080 0.1181 10 1 7.2618 3.9725 0.7744 11 6 7.9521 4.0633 -1.2643 12 6 9.3366 3.3970 0.7059 13 6 9.2901 2.8645 2.1149 14 1 8.3475 2.5636 2.5476 15 6 10.4512 2.7605 2.8512 16 7 11.5999 3.1209 2.3220 17 14 10.3937 2.0998 4.5975 18 1 11.7657 2.0824 5.1656 19 1 9.5249 2.9716 5.4283 20 1 9.8449 0.7200 4.5869 21 6 5.5687 0.6064 -0.0051 22 6 4.1993 0.4255 0.0002 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.2267 3.6636 -0.0004 29 1 5.6668 3.9860 -0.0008 30 1 6.9457 4.0712 -1.6831 31 1 8.3156 5.0869 -1.1738 32 1 8.6144 3.4988 -1.9206 33 1 9.7348 4.4116 0.7139 34 1 9.9784 2.7597 0.0976 35 1 11.6299 3.4637 1.4151 36 1 6.2266 -0.2500 -0.0095 37 1 3.7865 -0.5725 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:06 Heat of formation + Delta-G solvation = -69.829376 kcal Electronic energy + Delta-G solvation = -17888.985107 eV Core-core repulsion = 15017.528407 eV Total energy + Delta-G solvation = -2871.456700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19501 -38.87527 -36.37230 -33.71238 -32.05209 -31.46771 -30.67868 -28.27686 -27.07519 -24.21162 -23.15622 -22.30562 -21.87948 -19.99451 -18.33838 -17.35613 -16.85378 -16.14204 -15.89012 -14.80625 -14.57553 -14.28477 -13.70280 -13.43987 -13.37578 -13.06810 -12.96229 -12.77158 -12.62994 -12.17448 -11.98926 -11.64407 -11.53059 -11.38774 -11.07543 -10.81652 -10.62599 -10.42745 -10.09632 -9.89553 -9.64451 -8.87997 -8.55413 -8.33540 -7.37489 -6.35469 -4.03722 1.45293 1.75103 3.22940 3.46066 3.48553 3.66890 3.87768 4.00972 4.56327 4.73757 4.78287 4.95966 5.06075 5.07031 5.24789 5.38111 5.42453 5.52011 5.54947 5.57139 5.66389 5.76002 5.80342 5.90703 6.03828 6.15885 6.25172 6.44803 6.49086 6.55791 6.68866 6.82393 7.19585 7.30478 7.50655 8.08779 8.20423 8.46709 8.88068 9.66258 11.05369 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027577 B = 0.004721 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.084202 B = 5929.768459 C = 6601.060787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.073 3.927 5 C -0.110 4.110 6 C -0.177 4.177 7 C 0.118 3.882 8 O -0.292 6.292 9 C 0.094 3.906 10 H 0.063 0.937 11 C -0.179 4.179 12 C 0.012 3.988 13 C -0.594 4.594 14 H 0.050 0.950 15 C 0.015 3.985 16 N -0.914 5.914 17 Si 1.068 2.932 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.288 1.288 21 C -0.124 4.124 22 C -0.167 4.167 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.267 0.733 36 H 0.132 0.868 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.328 -3.952 -6.234 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.029 3.971 5 C -0.129 4.129 6 C -0.196 4.196 7 C 0.071 3.929 8 O -0.205 6.205 9 C 0.038 3.962 10 H 0.081 0.919 11 C -0.237 4.237 12 C -0.025 4.025 13 C -0.632 4.632 14 H 0.068 0.932 15 C -0.188 4.188 16 N -0.550 5.550 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.142 4.142 22 C -0.185 4.185 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.154 0.846 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.366 -4.304 -4.932 18.558 hybrid contribution -0.965 0.317 -1.344 1.684 sum -18.330 -3.987 -6.276 19.781 Atomic orbital electron populations 1.21762 0.93084 1.02601 1.03364 1.22694 0.95541 0.82602 1.01211 1.86030 1.19233 1.28563 1.89798 1.18741 0.81998 0.94035 1.02322 1.20146 0.94348 0.94700 1.03696 1.21208 0.92891 0.99091 1.06386 1.19112 0.84306 0.93550 0.95899 1.86273 1.16599 1.31188 1.86422 1.22636 0.99037 0.79824 0.94684 0.91881 1.22440 1.01570 1.01264 0.98379 1.19371 0.88950 0.97256 0.96912 1.21946 0.96261 1.46602 0.98414 0.93208 1.25821 0.92226 0.95459 1.05316 1.70798 1.26492 1.40609 1.17148 0.83551 0.75824 0.76306 0.74667 1.20759 1.21459 1.21407 1.20243 0.94186 0.95500 1.04308 1.20957 0.93237 0.97859 1.06487 0.91609 0.91677 0.90600 0.92338 0.92251 0.85459 0.84617 0.93042 0.91453 0.91965 0.95411 0.96234 0.92217 0.85055 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.05 0.53 5.46 37.16 0.20 0.73 16 3 O -0.32 -4.28 10.14 -19.69 -0.20 -4.48 16 4 C 0.07 1.08 6.69 -39.24 -0.26 0.82 16 5 C -0.11 -1.66 9.98 -39.45 -0.39 -2.06 16 6 C -0.18 -2.95 8.23 -39.45 -0.32 -3.28 16 7 C 0.12 2.22 6.60 -39.24 -0.26 1.96 16 8 O -0.29 -6.38 9.56 -19.69 -0.19 -6.57 16 9 C 0.09 1.99 2.17 -26.73 -0.06 1.93 16 10 H 0.06 1.31 6.32 -51.93 -0.33 0.98 16 11 C -0.18 -3.06 9.17 37.16 0.34 -2.72 16 12 C 0.01 0.30 4.00 -27.88 -0.11 0.19 16 13 C -0.59 -17.17 8.88 -34.44 -0.31 -17.48 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 16 N -0.91 -28.16 13.65 55.43 0.76 -27.40 16 17 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.12 -2.06 9.98 -39.45 -0.39 -2.45 16 22 C -0.17 -2.39 9.03 -39.45 -0.36 -2.75 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 27 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.14 2.14 5.41 -52.49 -0.28 1.85 16 30 H 0.05 0.78 6.89 -51.93 -0.36 0.42 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.72 8.01 -51.93 -0.42 0.30 16 34 H 0.02 0.53 8.00 -51.93 -0.42 0.11 16 35 H 0.27 8.15 7.22 -40.82 -0.29 7.85 16 36 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.13 1.46 6.29 -52.48 -0.33 1.13 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -32.17 308.53 -7.09 -39.25 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.38 Total: -0.74 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -1.64 Total: -25.48 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.76 Total: -27.40 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.39 Total: -11.05 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.17 -7.09 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.576 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds