Wall clock time and date at job start Mon Mar 30 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47152 * 2 1 4 4 C 1.35985 * 116.99800 * 179.97438 * 3 2 1 5 5 C 1.38698 * 119.99620 * 179.97438 * 4 3 2 6 6 C 1.38132 * 119.99664 * 180.02562 * 5 4 3 7 7 C 1.38701 * 120.00051 * 0.02562 * 6 5 4 8 8 O 1.35986 * 119.99626 * 179.97438 * 7 6 5 9 9 C 1.42894 * 117.00299 * 5.36475 * 8 7 6 10 10 H 1.08998 * 109.47070 * 35.24113 * 9 8 7 11 11 C 1.53003 * 109.46955 * 275.23976 * 9 8 7 12 12 C 1.52996 * 109.47369 * 155.24104 * 9 8 7 13 13 C 1.50702 * 109.47019 * 294.99886 * 12 9 8 14 14 H 1.07997 * 119.99789 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99695 * 179.97438 * 13 12 9 16 16 N 1.31510 * 120.00504 * 359.72747 * 15 13 12 17 17 Si 1.86800 * 119.99816 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47547 * 179.72679 * 17 15 13 19 19 H 1.48503 * 109.47454 * 299.72741 * 17 15 13 20 20 H 1.48497 * 109.47306 * 59.72714 * 17 15 13 21 21 C 1.38702 * 119.99885 * 0.24436 * 7 6 5 22 22 C 1.38127 * 119.99680 * 359.49811 * 21 7 6 23 23 H 1.08997 * 109.47390 * 300.00369 * 1 2 3 24 24 H 1.09003 * 109.46895 * 60.00537 * 1 2 3 25 25 H 1.09002 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47390 * 239.99631 * 2 1 3 27 27 H 1.09003 * 109.46895 * 119.99463 * 2 1 3 28 28 H 1.08000 * 120.00385 * 0.02562 * 5 4 3 29 29 H 1.07998 * 119.99702 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46943 * 60.00175 * 11 9 8 31 31 H 1.08999 * 109.46937 * 179.97438 * 11 9 8 32 32 H 1.08998 * 109.47343 * 299.99970 * 11 9 8 33 33 H 1.08995 * 109.47688 * 174.99619 * 12 9 8 34 34 H 1.08999 * 109.47298 * 54.99699 * 12 9 8 35 35 H 0.96999 * 119.99912 * 0.27365 * 16 15 13 36 36 H 1.07996 * 119.99375 * 179.73349 * 21 7 6 37 37 H 1.08003 * 119.99525 * 180.23021 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5254 0.0005 5 6 3.8846 2.8071 0.0000 6 6 5.2540 2.9881 0.0001 7 6 6.0989 1.8881 0.0000 8 8 7.4470 2.0663 -0.0005 9 6 7.9241 3.4080 0.1181 10 1 7.2618 3.9725 0.7744 11 6 7.9521 4.0633 -1.2643 12 6 9.3366 3.3970 0.7059 13 6 9.2901 2.8645 2.1149 14 1 8.3475 2.5636 2.5476 15 6 10.4512 2.7605 2.8512 16 7 11.5999 3.1209 2.3220 17 14 10.3937 2.0998 4.5975 18 1 11.7657 2.0824 5.1656 19 1 9.5249 2.9716 5.4283 20 1 9.8449 0.7200 4.5869 21 6 5.5687 0.6064 -0.0051 22 6 4.1993 0.4255 0.0002 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.2267 3.6636 -0.0004 29 1 5.6668 3.9860 -0.0008 30 1 6.9457 4.0712 -1.6831 31 1 8.3156 5.0869 -1.1738 32 1 8.6144 3.4988 -1.9206 33 1 9.7348 4.4116 0.7139 34 1 9.9784 2.7597 0.0976 35 1 11.6299 3.4637 1.4151 36 1 6.2266 -0.2500 -0.0095 37 1 3.7865 -0.5725 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:06 Heat of formation + Delta-G solvation = -88.656725 kcal Electronic energy + Delta-G solvation = -17889.801522 eV Core-core repulsion = 15017.528407 eV Total energy + Delta-G solvation = -2872.273115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.43546 -40.15184 -37.65564 -35.72472 -33.49478 -32.56895 -31.90655 -29.49777 -28.97603 -25.30333 -25.08148 -23.41928 -23.25201 -21.44253 -19.53309 -19.00315 -18.68313 -17.16555 -16.99641 -16.28028 -15.87318 -15.67933 -15.56402 -14.89742 -14.70183 -14.37201 -14.16078 -14.06422 -13.76142 -13.45468 -13.18721 -13.10351 -13.02529 -12.77692 -12.52220 -12.40112 -11.99062 -11.91412 -11.74211 -11.38373 -11.22286 -10.65430 -10.57298 -10.08762 -8.70134 -8.65528 -6.38817 0.24595 0.49271 1.50254 1.58597 1.78510 2.26385 2.44979 2.54894 2.75119 3.15681 3.79540 3.84203 3.91951 4.07302 4.09082 4.15370 4.22183 4.28057 4.37511 4.40511 4.62436 4.62631 4.78091 4.87563 4.96414 4.97148 5.01206 5.03121 5.15283 5.20551 5.28338 5.32932 5.40988 5.63354 5.94482 6.15112 6.42412 6.54299 6.69319 7.39599 8.71711 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027577 B = 0.004721 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.084202 B = 5929.768459 C = 6601.060787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.079 3.921 5 C -0.115 4.115 6 C -0.178 4.178 7 C 0.080 3.920 8 O -0.323 6.323 9 C 0.100 3.900 10 H 0.064 0.936 11 C -0.168 4.168 12 C 0.011 3.989 13 C -0.607 4.607 14 H 0.042 0.958 15 C -0.037 4.037 16 N -0.937 5.937 17 Si 1.114 2.886 18 H -0.280 1.280 19 H -0.268 1.268 20 H -0.275 1.275 21 C -0.133 4.133 22 C -0.160 4.160 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.021 0.979 34 H -0.005 1.005 35 H 0.256 0.744 36 H 0.133 0.867 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.829 -4.631 -5.956 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.245 6.245 4 C 0.034 3.966 5 C -0.134 4.134 6 C -0.197 4.197 7 C 0.035 3.965 8 O -0.238 6.238 9 C 0.044 3.956 10 H 0.082 0.918 11 C -0.225 4.225 12 C -0.026 4.026 13 C -0.645 4.645 14 H 0.060 0.940 15 C -0.234 4.234 16 N -0.575 5.575 17 Si 0.935 3.065 18 H -0.205 1.205 19 H -0.193 1.193 20 H -0.200 1.200 21 C -0.152 4.152 22 C -0.179 4.179 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.158 0.842 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.013 0.987 35 H 0.066 0.934 36 H 0.151 0.849 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.903 -4.980 -4.678 21.043 hybrid contribution -0.348 0.459 -1.471 1.580 sum -20.251 -4.521 -6.149 21.642 Atomic orbital electron populations 1.21794 0.91331 1.04144 1.03183 1.23067 0.97004 0.81008 1.02174 1.86047 1.18064 1.31040 1.89341 1.18900 0.82930 0.94007 1.00736 1.20395 0.93934 0.95906 1.03145 1.21273 0.93450 0.98726 1.06239 1.19425 0.83194 0.95121 0.98800 1.86178 1.18846 1.31154 1.87583 1.22388 0.96029 0.80423 0.96718 0.91826 1.22331 1.02938 1.01439 0.95827 1.19282 0.91802 0.95933 0.95537 1.22297 0.95955 1.46304 0.99974 0.93962 1.27335 0.91817 0.95095 1.09152 1.70920 1.27372 1.42307 1.16870 0.82973 0.76380 0.76687 0.70414 1.20473 1.19282 1.20018 1.20444 0.95371 0.94921 1.04467 1.21222 0.92086 0.99412 1.05171 0.91929 0.91736 0.88201 0.91124 0.91459 0.83385 0.84173 0.90819 0.89977 0.92436 0.96060 0.98700 0.93415 0.84923 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.04 0.68 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.87 10.14 -93.38 -0.95 -8.82 16 4 C 0.08 2.15 6.69 22.49 0.15 2.30 16 5 C -0.12 -3.26 9.98 22.35 0.22 -3.04 16 6 C -0.18 -5.78 8.23 22.36 0.18 -5.60 16 7 C 0.08 3.00 6.60 22.49 0.15 3.15 16 8 O -0.32 -14.44 9.56 -93.39 -0.89 -15.34 16 9 C 0.10 4.30 2.17 30.59 0.07 4.37 16 10 H 0.06 2.67 6.32 -2.39 -0.02 2.66 16 11 C -0.17 -5.67 9.17 71.98 0.66 -5.01 16 12 C 0.01 0.60 4.00 29.85 0.12 0.72 16 13 C -0.61 -35.88 8.88 25.60 0.23 -35.65 16 14 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 15 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 16 N -0.94 -58.96 13.65 21.45 0.29 -58.67 16 17 Si 1.11 51.91 29.90 68.60 2.05 53.96 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C -0.13 -4.35 9.98 22.35 0.22 -4.13 16 22 C -0.16 -4.26 9.03 22.35 0.20 -4.06 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 27 H 0.07 0.99 7.66 -2.39 -0.02 0.98 16 28 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.14 4.29 5.41 -2.91 -0.02 4.28 16 30 H 0.07 2.15 6.89 -2.38 -0.02 2.13 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.02 1.14 8.01 -2.39 -0.02 1.12 16 34 H -0.01 -0.30 8.00 -2.39 -0.02 -0.32 16 35 H 0.26 16.19 7.22 -92.71 -0.67 15.52 16 36 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.16 3.11 6.29 -2.91 -0.02 3.09 16 Total: -1.00 -70.14 308.53 5.45 -64.69 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.14 Total: 12.74 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 3.80 Total: -48.56 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.29 Total: -58.67 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.84 Total: -24.16 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.05 Total: 53.96 kcal Total: -70.14 5.45 -64.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.968 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds