Wall clock time and date at job start Mon Mar 30 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46959 * 2 1 4 4 C 1.35988 * 116.99791 * 180.02562 * 3 2 1 5 5 C 1.38700 * 119.99875 * 179.97438 * 4 3 2 6 6 C 1.38131 * 119.99548 * 180.02562 * 5 4 3 7 7 C 1.38694 * 120.00636 * 0.02562 * 6 5 4 8 8 O 1.35977 * 120.00642 * 179.97438 * 7 6 5 9 9 C 1.42899 * 117.00443 * 174.57646 * 8 7 6 10 10 H 1.09001 * 109.46969 * 325.10744 * 9 8 7 11 11 C 1.52989 * 109.47223 * 85.10670 * 9 8 7 12 12 C 1.52998 * 109.46916 * 205.10819 * 9 8 7 13 13 C 1.50709 * 109.47245 * 65.00338 * 12 9 8 14 14 H 1.07994 * 119.99781 * 359.97438 * 13 12 9 15 15 C 1.37880 * 119.99765 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99528 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47332 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46811 * 120.00180 * 17 15 13 20 20 H 1.48502 * 109.46908 * 240.00000 * 17 15 13 21 21 C 1.38706 * 119.99477 * 0.25189 * 7 6 5 22 22 C 1.38133 * 120.00033 * 359.49156 * 21 7 6 23 23 H 1.09001 * 109.46970 * 299.99842 * 1 2 3 24 24 H 1.09007 * 109.47234 * 59.99753 * 1 2 3 25 25 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 240.00158 * 2 1 3 27 27 H 1.08993 * 109.47459 * 120.00367 * 2 1 3 28 28 H 1.07997 * 120.00238 * 0.02562 * 5 4 3 29 29 H 1.08008 * 119.99511 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47088 * 60.00147 * 11 9 8 31 31 H 1.09000 * 109.47510 * 180.02562 * 11 9 8 32 32 H 1.08998 * 109.47601 * 300.00541 * 11 9 8 33 33 H 1.09003 * 109.46791 * 184.99355 * 12 9 8 34 34 H 1.09000 * 109.47563 * 304.99782 * 12 9 8 35 35 H 0.96997 * 119.99827 * 179.97438 * 16 15 13 36 36 H 1.07998 * 119.99471 * 179.73029 * 21 7 6 37 37 H 1.07996 * 119.99971 * 180.23490 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8846 2.8071 -0.0011 6 6 5.2540 2.9880 -0.0022 7 6 6.0989 1.8882 -0.0033 8 8 7.4469 2.0662 -0.0048 9 6 8.2563 0.8946 0.1145 10 1 7.7609 0.1757 0.7670 11 6 8.4599 0.2724 -1.2683 12 6 9.6147 1.2716 0.7091 13 6 9.4251 1.7704 2.1186 14 1 8.4348 1.8145 2.5471 15 6 10.5160 2.1704 2.8609 16 7 11.7220 2.1162 2.3391 17 14 10.2809 2.7893 4.6076 18 1 8.8379 2.7515 4.9562 19 1 11.0391 1.9232 5.5458 20 1 10.7789 4.1846 4.7096 21 6 5.5687 0.6064 -0.0085 22 6 4.1993 0.4255 -0.0021 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.2267 3.6636 -0.0007 29 1 5.6668 3.9861 -0.0031 30 1 8.9553 0.9913 -1.9208 31 1 9.0769 -0.6215 -1.1772 32 1 7.4922 0.0039 -1.6920 33 1 10.2631 0.3955 0.7180 34 1 10.0711 2.0554 0.1046 35 1 12.4894 2.3980 2.8612 36 1 6.2266 -0.2500 -0.0137 37 1 3.7865 -0.5725 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:09 Heat of formation + Delta-G solvation = -66.287771 kcal Electronic energy + Delta-G solvation = -17885.677157 eV Core-core repulsion = 15014.374032 eV Total energy + Delta-G solvation = -2871.303125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15107 -38.80003 -36.32217 -33.40046 -31.90650 -31.61528 -30.60786 -28.22640 -27.43568 -24.09225 -23.45264 -22.48252 -21.36145 -19.93944 -18.29558 -17.29905 -16.37596 -16.11597 -15.88150 -14.73226 -14.57650 -14.35833 -13.81623 -13.55659 -13.44806 -13.27184 -12.68839 -12.65155 -12.20209 -11.98262 -11.86367 -11.75771 -11.47790 -11.37287 -11.15745 -10.77175 -10.63091 -10.53187 -10.18591 -9.85977 -9.35348 -9.06875 -8.82532 -8.38624 -7.32717 -6.01336 -4.02476 1.50135 1.79442 3.26175 3.32311 3.39828 3.45469 3.95248 4.06775 4.46927 4.75623 4.79352 4.98024 5.07728 5.09419 5.30856 5.35894 5.46069 5.58906 5.59766 5.68329 5.72322 5.80006 5.82851 5.94512 6.11098 6.19667 6.34960 6.50023 6.55988 6.67787 6.77738 6.88904 7.45870 7.54969 7.61916 7.95681 8.19545 8.37835 9.01626 9.60977 11.10171 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.004681 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.409887 B = 5980.565218 C = 6460.308790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.072 3.928 5 C -0.111 4.111 6 C -0.124 4.124 7 C 0.119 3.881 8 O -0.291 6.291 9 C 0.087 3.913 10 H 0.061 0.939 11 C -0.177 4.177 12 C 0.025 3.975 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.178 4.178 22 C -0.167 4.167 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.260 0.740 36 H 0.133 0.867 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.572 -4.608 -6.231 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.028 3.972 5 C -0.130 4.130 6 C -0.142 4.142 7 C 0.072 3.928 8 O -0.204 6.204 9 C 0.031 3.969 10 H 0.079 0.921 11 C -0.235 4.235 12 C -0.012 4.012 13 C -0.551 4.551 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.197 4.197 22 C -0.185 4.185 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.412 -4.263 -6.206 18.971 hybrid contribution 0.097 -0.198 1.003 1.027 sum -17.315 -4.461 -5.203 18.623 Atomic orbital electron populations 1.21762 0.93104 1.02575 1.03359 1.22678 0.95509 0.82660 1.01159 1.86026 1.19290 1.28487 1.89830 1.18751 0.81944 0.94085 1.02455 1.20143 0.94103 0.94713 1.04013 1.20289 0.91176 0.98339 1.04418 1.19129 0.84906 0.93043 0.95702 1.86288 1.12148 1.35674 1.86322 1.22837 0.94065 0.85245 0.94748 0.92121 1.22413 1.01234 1.01404 0.98438 1.19273 0.88008 0.97942 0.95958 1.21171 0.93306 1.42695 0.97917 0.92525 1.24982 0.95208 0.95797 0.98410 1.69959 0.98259 1.48340 1.37105 0.86525 0.78270 0.78549 0.84650 1.19705 1.21056 1.20935 1.21185 0.95241 0.96968 1.06303 1.20959 0.93599 0.97715 1.06274 0.91622 0.91661 0.90638 0.92399 0.92323 0.85101 0.84590 0.91888 0.91459 0.93373 0.94427 0.95272 0.93008 0.84972 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.54 5.46 37.16 0.20 0.75 16 3 O -0.32 -4.30 10.14 -19.70 -0.20 -4.50 16 4 C 0.07 1.06 6.69 -39.24 -0.26 0.80 16 5 C -0.11 -1.65 9.98 -39.45 -0.39 -2.05 16 6 C -0.12 -2.05 9.98 -39.45 -0.39 -2.45 16 7 C 0.12 2.22 6.60 -39.24 -0.26 1.96 16 8 O -0.29 -6.29 9.55 -19.67 -0.19 -6.48 16 9 C 0.09 1.81 2.17 -26.74 -0.06 1.75 16 10 H 0.06 1.24 6.31 -51.93 -0.33 0.91 16 11 C -0.18 -3.03 9.17 37.15 0.34 -2.69 16 12 C 0.02 0.64 4.68 -27.88 -0.13 0.51 16 13 C -0.51 -14.59 8.88 -34.43 -0.31 -14.90 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.18 -2.94 8.24 -39.45 -0.33 -3.27 16 22 C -0.17 -2.42 9.03 -39.45 -0.36 -2.78 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 2.07 5.42 -52.49 -0.28 1.78 16 37 H 0.12 1.46 6.29 -52.49 -0.33 1.13 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -31.23 309.88 -7.10 -38.33 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.44 Total: -1.31 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -1.66 Total: -21.56 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.39 Total: -10.98 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.23 -7.10 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.959 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds