Wall clock time and date at job start Mon Mar 30 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46959 * 2 1 4 4 C 1.35988 * 116.99791 * 180.02562 * 3 2 1 5 5 C 1.38700 * 119.99875 * 179.97438 * 4 3 2 6 6 C 1.38131 * 119.99548 * 180.02562 * 5 4 3 7 7 C 1.38694 * 120.00636 * 0.02562 * 6 5 4 8 8 O 1.35977 * 120.00642 * 179.97438 * 7 6 5 9 9 C 1.42899 * 117.00443 * 174.57646 * 8 7 6 10 10 H 1.09001 * 109.46969 * 325.10744 * 9 8 7 11 11 C 1.52989 * 109.47223 * 85.10670 * 9 8 7 12 12 C 1.52998 * 109.46916 * 205.10819 * 9 8 7 13 13 C 1.50709 * 109.47245 * 65.00338 * 12 9 8 14 14 H 1.07994 * 119.99781 * 359.97438 * 13 12 9 15 15 C 1.37880 * 119.99765 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99528 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47332 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46811 * 120.00180 * 17 15 13 20 20 H 1.48502 * 109.46908 * 240.00000 * 17 15 13 21 21 C 1.38706 * 119.99477 * 0.25189 * 7 6 5 22 22 C 1.38133 * 120.00033 * 359.49156 * 21 7 6 23 23 H 1.09001 * 109.46970 * 299.99842 * 1 2 3 24 24 H 1.09007 * 109.47234 * 59.99753 * 1 2 3 25 25 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 240.00158 * 2 1 3 27 27 H 1.08993 * 109.47459 * 120.00367 * 2 1 3 28 28 H 1.07997 * 120.00238 * 0.02562 * 5 4 3 29 29 H 1.08008 * 119.99511 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47088 * 60.00147 * 11 9 8 31 31 H 1.09000 * 109.47510 * 180.02562 * 11 9 8 32 32 H 1.08998 * 109.47601 * 300.00541 * 11 9 8 33 33 H 1.09003 * 109.46791 * 184.99355 * 12 9 8 34 34 H 1.09000 * 109.47563 * 304.99782 * 12 9 8 35 35 H 0.96997 * 119.99827 * 179.97438 * 16 15 13 36 36 H 1.07998 * 119.99471 * 179.73029 * 21 7 6 37 37 H 1.07996 * 119.99971 * 180.23490 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8846 2.8071 -0.0011 6 6 5.2540 2.9880 -0.0022 7 6 6.0989 1.8882 -0.0033 8 8 7.4469 2.0662 -0.0048 9 6 8.2563 0.8946 0.1145 10 1 7.7609 0.1757 0.7670 11 6 8.4599 0.2724 -1.2683 12 6 9.6147 1.2716 0.7091 13 6 9.4251 1.7704 2.1186 14 1 8.4348 1.8145 2.5471 15 6 10.5160 2.1704 2.8609 16 7 11.7220 2.1162 2.3391 17 14 10.2809 2.7893 4.6076 18 1 8.8379 2.7515 4.9562 19 1 11.0391 1.9232 5.5458 20 1 10.7789 4.1846 4.7096 21 6 5.5687 0.6064 -0.0085 22 6 4.1993 0.4255 -0.0021 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.2267 3.6636 -0.0007 29 1 5.6668 3.9861 -0.0031 30 1 8.9553 0.9913 -1.9208 31 1 9.0769 -0.6215 -1.1772 32 1 7.4922 0.0039 -1.6920 33 1 10.2631 0.3955 0.7180 34 1 10.0711 2.0554 0.1046 35 1 12.4894 2.3980 2.8612 36 1 6.2266 -0.2500 -0.0137 37 1 3.7865 -0.5725 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:08 Heat of formation + Delta-G solvation = -84.221699 kcal Electronic energy + Delta-G solvation = -17886.454831 eV Core-core repulsion = 15014.374032 eV Total energy + Delta-G solvation = -2872.080798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37982 -40.07259 -37.59080 -35.37750 -33.43796 -32.66511 -31.82127 -29.48613 -29.28794 -25.32588 -25.02824 -23.86054 -22.44194 -21.51534 -19.47200 -18.63685 -18.51349 -17.21421 -16.97667 -16.48900 -16.06770 -15.76051 -15.16242 -14.75498 -14.68105 -14.36679 -14.12842 -13.73377 -13.57237 -13.42477 -13.35540 -13.09898 -12.99400 -12.66555 -12.59107 -12.44863 -12.24339 -11.90024 -11.60804 -11.36146 -11.24607 -10.90920 -10.59558 -10.03052 -8.60619 -8.21691 -6.30579 0.29745 0.54223 1.37457 1.38704 1.51694 2.30430 2.39917 2.53311 2.80398 3.12951 3.80907 3.86886 4.05034 4.09763 4.20057 4.21567 4.28030 4.40894 4.41967 4.49503 4.54468 4.75085 4.85626 4.95738 4.97957 5.01934 5.13284 5.17979 5.22918 5.35486 5.37264 5.43966 5.51802 5.69621 5.76518 6.18789 6.47439 6.74571 6.82109 7.37040 8.90248 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.004681 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.409887 B = 5980.565218 C = 6460.308790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.330 6.330 4 C 0.077 3.923 5 C -0.113 4.113 6 C -0.132 4.132 7 C 0.082 3.918 8 O -0.322 6.322 9 C 0.094 3.906 10 H 0.064 0.936 11 C -0.167 4.167 12 C 0.028 3.972 13 C -0.530 4.530 14 H 0.050 0.950 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.960 3.040 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.278 1.278 21 C -0.180 4.180 22 C -0.164 4.164 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.025 0.975 34 H -0.002 1.002 35 H 0.264 0.736 36 H 0.138 0.862 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.849 -5.499 -5.874 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.032 3.968 5 C -0.131 4.131 6 C -0.151 4.151 7 C 0.037 3.963 8 O -0.236 6.236 9 C 0.039 3.961 10 H 0.082 0.918 11 C -0.224 4.224 12 C -0.009 4.009 13 C -0.568 4.568 14 H 0.068 0.932 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.204 1.204 21 C -0.199 4.199 22 C -0.183 4.183 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.714 -5.165 -5.857 21.204 hybrid contribution 0.659 0.063 0.866 1.090 sum -19.055 -5.102 -4.991 20.348 Atomic orbital electron populations 1.21792 0.91330 1.04114 1.03199 1.23042 0.96988 0.81091 1.02050 1.86042 1.18163 1.30917 1.89399 1.18914 0.82864 0.94083 1.00960 1.20372 0.93549 0.95919 1.03306 1.20445 0.91910 0.98140 1.04593 1.19426 0.83711 0.94702 0.98507 1.86193 1.13978 1.36000 1.87455 1.22554 0.91617 0.85274 0.96705 0.91789 1.22308 1.02729 1.01407 0.95981 1.19126 0.90747 0.96244 0.94802 1.21489 0.93082 1.42913 0.99351 0.93175 1.25858 0.94889 0.95928 1.02769 1.70068 0.99062 1.49150 1.38843 0.85470 0.78366 0.78151 0.79514 1.19306 1.19862 1.20360 1.21297 0.96292 0.96234 1.06092 1.21235 0.92683 0.99203 1.05161 0.91934 0.91690 0.88251 0.91223 0.91625 0.82965 0.84453 0.92521 0.90028 0.91076 0.95641 0.98322 0.92666 0.84387 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.04 0.71 5.46 71.98 0.39 1.10 16 3 O -0.33 -7.96 10.14 -93.41 -0.95 -8.91 16 4 C 0.08 2.10 6.69 22.49 0.15 2.25 16 5 C -0.11 -3.20 9.98 22.35 0.22 -2.97 16 6 C -0.13 -4.37 9.98 22.35 0.22 -4.15 16 7 C 0.08 3.06 6.60 22.49 0.15 3.21 16 8 O -0.32 -14.24 9.55 -93.29 -0.89 -15.13 16 9 C 0.09 4.00 2.17 30.59 0.07 4.07 16 10 H 0.06 2.63 6.31 -2.39 -0.02 2.61 16 11 C -0.17 -5.62 9.17 71.98 0.66 -4.96 16 12 C 0.03 1.48 4.68 29.85 0.14 1.62 16 13 C -0.53 -30.92 8.88 25.60 0.23 -30.69 16 14 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 15 C 0.00 0.19 5.46 84.66 0.46 0.66 16 16 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 17 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 C -0.18 -5.73 8.24 22.36 0.18 -5.55 16 22 C -0.16 -4.38 9.03 22.35 0.20 -4.18 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 27 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 28 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.05 6.91 -2.39 -0.02 2.04 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.14 4.12 5.42 -2.91 -0.02 4.10 16 37 H 0.15 3.07 6.29 -2.91 -0.02 3.06 16 Total: -1.00 -67.85 309.88 5.34 -62.51 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.04 Total: 11.16 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 3.82 Total: -40.62 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.28 Total: -56.49 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -1.84 Total: -24.04 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -67.85 5.34 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.708 kcal (2) G-P(sol) polarization free energy of solvation -67.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds