Wall clock time and date at job start Mon Mar 30 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99985 * 2 1 4 4 C 1.38733 * 120.05233 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94101 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05495 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94316 * 179.97438 * 6 5 4 8 8 O 1.42890 * 109.47451 * 89.99392 * 7 6 5 9 9 C 1.42905 * 113.99966 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.46641 * 30.00814 * 9 8 7 11 11 C 1.52997 * 109.47264 * 270.00126 * 9 8 7 12 12 C 1.52999 * 109.46728 * 150.00041 * 9 8 7 13 13 C 1.50700 * 109.47526 * 295.00002 * 12 9 8 14 14 H 1.07999 * 119.99543 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00082 * 179.97438 * 13 12 9 16 16 N 1.31517 * 119.99897 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99903 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47331 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47042 * 120.00362 * 17 15 13 20 20 H 1.48503 * 109.47111 * 240.00250 * 17 15 13 21 21 C 1.38262 * 120.11469 * 0.24911 * 6 5 4 22 22 C 1.38154 * 120.05121 * 359.45542 * 21 6 5 23 23 H 1.09002 * 109.47306 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47110 * 300.00230 * 1 2 3 25 25 H 1.08995 * 109.47175 * 60.00412 * 1 2 3 26 26 H 1.07992 * 120.03088 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.97149 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.46522 * 329.99185 * 7 6 5 29 29 H 1.08994 * 109.46688 * 210.00116 * 7 6 5 30 30 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.46832 * 60.00108 * 11 9 8 32 32 H 1.09004 * 109.47261 * 300.00089 * 11 9 8 33 33 H 1.09001 * 109.47317 * 55.00691 * 12 9 8 34 34 H 1.09006 * 109.47194 * 175.00327 * 12 9 8 35 35 H 0.97003 * 119.99498 * 179.97438 * 16 15 13 36 36 H 1.07999 * 119.97438 * 179.71134 * 21 6 5 37 37 H 1.08003 * 120.02176 * 180.24882 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 8 4.2019 5.4444 -1.3440 9 6 4.8481 6.7141 -1.4557 10 1 5.5024 6.8654 -0.5972 11 6 3.7932 7.8216 -1.4946 12 6 5.6765 6.7533 -2.7414 13 6 6.7924 5.7446 -2.6511 14 1 6.8998 5.1361 -1.7654 15 6 7.6756 5.5979 -3.6996 16 7 7.5445 6.3387 -4.7784 17 14 9.0585 4.3470 -3.5879 18 1 8.9874 3.6458 -2.2808 19 1 8.9217 3.3584 -4.6875 20 1 10.3654 5.0420 -3.7068 21 6 1.9211 3.6048 0.0079 22 6 1.2915 2.3751 0.0012 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 4.0208 0.3799 -0.0005 27 1 5.1345 2.5749 0.0000 28 1 4.9442 4.9376 0.5162 29 1 3.3583 5.7456 0.5177 30 1 4.2861 8.7901 -1.5793 31 1 3.2031 7.7935 -0.5785 32 1 3.1389 7.6702 -2.3531 33 1 5.0384 6.5142 -3.5922 34 1 6.0976 7.7502 -2.8720 35 1 8.1661 6.2357 -5.5159 36 1 1.3343 4.5114 0.0138 37 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:37 Heat of formation + Delta-G solvation = -71.395220 kcal Electronic energy + Delta-G solvation = -17802.317618 eV Core-core repulsion = 14930.793018 eV Total energy + Delta-G solvation = -2871.524600 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.08909 -38.07863 -36.89744 -33.24895 -31.68905 -31.00956 -30.17441 -27.65752 -27.32543 -25.08726 -23.05709 -22.54019 -21.03198 -20.06923 -18.15460 -16.41243 -16.19600 -16.00057 -15.78588 -15.47649 -14.60037 -14.38484 -14.20202 -13.57966 -13.29243 -13.12462 -12.76535 -12.36860 -12.03669 -11.88591 -11.77664 -11.66817 -11.29937 -11.05085 -10.77062 -10.72711 -10.67336 -10.50880 -10.04426 -9.38982 -9.10045 -8.88650 -8.57685 -8.30177 -8.06088 -5.92857 -3.92758 1.45721 1.47651 3.21731 3.36209 3.43499 3.47559 3.77821 4.52738 4.66271 4.78342 4.91469 4.98015 5.01019 5.27166 5.31016 5.39683 5.45006 5.49864 5.69686 5.77785 5.83121 5.88254 6.01998 6.12261 6.16776 6.33848 6.36451 6.43908 6.76641 6.82522 6.84610 6.96829 7.38655 7.57281 7.71522 8.05003 8.22004 8.49840 9.11295 9.69388 11.19010 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.005209 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.136828 B = 5373.885558 C = 6303.230198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.154 4.154 5 C -0.056 4.056 6 C -0.112 4.112 7 C 0.104 3.896 8 O -0.361 6.361 9 C 0.090 3.910 10 H 0.047 0.953 11 C -0.171 4.171 12 C 0.023 3.977 13 C -0.504 4.504 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.062 4.062 22 C -0.213 4.213 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.030 0.970 35 H 0.259 0.741 36 H 0.124 0.876 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.204 -7.328 11.638 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.172 4.172 5 C -0.074 4.074 6 C -0.112 4.112 7 C 0.027 3.973 8 O -0.280 6.280 9 C 0.032 3.968 10 H 0.065 0.935 11 C -0.229 4.229 12 C -0.013 4.013 13 C -0.543 4.543 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.081 4.081 22 C -0.232 4.232 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.101 -7.595 11.310 18.901 hybrid contribution 0.547 -0.358 0.087 0.660 sum -12.554 -7.953 11.397 18.728 Atomic orbital electron populations 1.23017 0.78718 1.03630 1.01326 1.86052 1.21154 1.27241 1.88959 1.19030 0.92391 0.83947 0.96913 1.20408 0.91251 0.98652 1.06933 1.20978 1.00385 0.90792 0.95211 1.19666 0.93405 0.94862 1.03286 1.21172 0.97955 0.91483 0.86729 1.88099 1.79769 1.37331 1.22836 1.22413 0.91844 0.81225 1.01270 0.93501 1.22332 1.00104 0.99605 1.00870 1.19249 0.93838 0.97476 0.90780 1.21170 1.11153 1.19975 1.01977 0.92652 1.24991 0.97969 0.96161 0.95462 1.69972 1.37615 1.40208 1.06112 0.86559 0.82044 0.81500 0.78039 1.19785 1.21069 1.21169 1.20825 0.93952 0.96944 0.96334 1.21141 0.99705 0.92324 1.09987 0.88488 0.92810 0.92652 0.85245 0.84868 0.92999 0.93774 0.92181 0.94154 0.92381 0.95657 0.95213 0.93171 0.85826 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.04 10.50 -19.42 -0.20 -4.24 16 3 C 0.12 1.70 6.69 -39.22 -0.26 1.43 16 4 C -0.15 -2.23 9.99 -39.43 -0.39 -2.62 16 5 C -0.06 -0.87 9.69 -39.60 -0.38 -1.25 16 6 C -0.11 -1.79 5.51 -104.60 -0.58 -2.37 16 7 C 0.10 1.76 5.87 36.01 0.21 1.97 16 8 O -0.36 -7.78 9.72 -35.23 -0.34 -8.12 16 9 C 0.09 1.92 2.67 -26.73 -0.07 1.85 16 10 H 0.05 0.97 7.79 -51.93 -0.40 0.56 16 11 C -0.17 -3.03 9.53 37.16 0.35 -2.68 16 12 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 13 C -0.50 -14.55 8.88 -34.44 -0.31 -14.86 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 17 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C -0.06 -0.88 9.69 -39.60 -0.38 -1.26 16 22 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 23 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 26 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 29 H 0.04 0.65 7.81 -51.93 -0.41 0.25 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.61 7.87 -51.93 -0.41 0.20 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 1.27 6.30 -52.48 -0.33 0.94 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -32.58 315.93 -7.16 -39.74 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.69 Total: -2.85 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -1.40 Total: -19.69 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.75 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.55 Total: -12.36 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.58 -7.16 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.657 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds