Wall clock time and date at job start Mon Mar 30 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99985 * 2 1 4 4 C 1.38733 * 120.05233 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94101 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05495 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94316 * 179.97438 * 6 5 4 8 8 O 1.42890 * 109.47451 * 89.99392 * 7 6 5 9 9 C 1.42905 * 113.99966 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.46641 * 30.00814 * 9 8 7 11 11 C 1.52997 * 109.47264 * 270.00126 * 9 8 7 12 12 C 1.52999 * 109.46728 * 150.00041 * 9 8 7 13 13 C 1.50700 * 109.47526 * 295.00002 * 12 9 8 14 14 H 1.07999 * 119.99543 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00082 * 179.97438 * 13 12 9 16 16 N 1.31517 * 119.99897 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99903 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47331 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47042 * 120.00362 * 17 15 13 20 20 H 1.48503 * 109.47111 * 240.00250 * 17 15 13 21 21 C 1.38262 * 120.11469 * 0.24911 * 6 5 4 22 22 C 1.38154 * 120.05121 * 359.45542 * 21 6 5 23 23 H 1.09002 * 109.47306 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47110 * 300.00230 * 1 2 3 25 25 H 1.08995 * 109.47175 * 60.00412 * 1 2 3 26 26 H 1.07992 * 120.03088 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.97149 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.46522 * 329.99185 * 7 6 5 29 29 H 1.08994 * 109.46688 * 210.00116 * 7 6 5 30 30 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.46832 * 60.00108 * 11 9 8 32 32 H 1.09004 * 109.47261 * 300.00089 * 11 9 8 33 33 H 1.09001 * 109.47317 * 55.00691 * 12 9 8 34 34 H 1.09006 * 109.47194 * 175.00327 * 12 9 8 35 35 H 0.97003 * 119.99498 * 179.97438 * 16 15 13 36 36 H 1.07999 * 119.97438 * 179.71134 * 21 6 5 37 37 H 1.08003 * 120.02176 * 180.24882 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 8 4.2019 5.4444 -1.3440 9 6 4.8481 6.7141 -1.4557 10 1 5.5024 6.8654 -0.5972 11 6 3.7932 7.8216 -1.4946 12 6 5.6765 6.7533 -2.7414 13 6 6.7924 5.7446 -2.6511 14 1 6.8998 5.1361 -1.7654 15 6 7.6756 5.5979 -3.6996 16 7 7.5445 6.3387 -4.7784 17 14 9.0585 4.3470 -3.5879 18 1 8.9874 3.6458 -2.2808 19 1 8.9217 3.3584 -4.6875 20 1 10.3654 5.0420 -3.7068 21 6 1.9211 3.6048 0.0079 22 6 1.2915 2.3751 0.0012 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 4.0208 0.3799 -0.0005 27 1 5.1345 2.5749 0.0000 28 1 4.9442 4.9376 0.5162 29 1 3.3583 5.7456 0.5177 30 1 4.2861 8.7901 -1.5793 31 1 3.2031 7.7935 -0.5785 32 1 3.1389 7.6702 -2.3531 33 1 5.0384 6.5142 -3.5922 34 1 6.0976 7.7502 -2.8720 35 1 8.1661 6.2357 -5.5159 36 1 1.3343 4.5114 0.0138 37 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:37 Heat of formation + Delta-G solvation = -91.012471 kcal Electronic energy + Delta-G solvation = -17803.168286 eV Core-core repulsion = 14930.793018 eV Total energy + Delta-G solvation = -2872.375268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09655 -39.41189 -38.16618 -35.27337 -33.36017 -32.09386 -31.49312 -29.26709 -28.45170 -26.29928 -25.05097 -23.60635 -22.15189 -21.82578 -19.11211 -18.49632 -17.63827 -17.23445 -16.88705 -16.62346 -16.34882 -15.79832 -15.39247 -14.73163 -14.65117 -14.44062 -14.02299 -13.85974 -13.51083 -13.38717 -13.30121 -13.01965 -12.79992 -12.63534 -12.39845 -12.25002 -11.98509 -11.82156 -11.70705 -11.23934 -11.18234 -10.55919 -10.20495 -9.96547 -9.14011 -8.17154 -6.25181 0.34758 0.38881 1.38589 1.40085 1.52563 2.36517 2.42558 2.61813 3.14760 3.31526 3.81622 3.93000 4.02304 4.19658 4.29613 4.37749 4.39920 4.41331 4.47098 4.56709 4.60343 4.62708 4.74887 4.77081 4.91149 5.08201 5.20436 5.25847 5.28503 5.35207 5.45980 5.55050 5.69102 5.77900 5.82743 6.26210 6.43841 6.63812 6.87993 7.41719 8.95267 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.005209 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.136828 B = 5373.885558 C = 6303.230198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.120 3.880 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.137 4.137 7 C 0.102 3.898 8 O -0.390 6.390 9 C 0.095 3.905 10 H 0.053 0.947 11 C -0.162 4.162 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.055 0.945 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.275 1.275 21 C -0.064 4.064 22 C -0.209 4.209 23 H 0.120 0.880 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.127 0.873 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.049 0.951 33 H -0.010 1.010 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.143 0.857 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.437 -8.212 12.946 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.074 3.926 4 C -0.186 4.186 5 C -0.091 4.091 6 C -0.137 4.137 7 C 0.026 3.974 8 O -0.311 6.311 9 C 0.038 3.962 10 H 0.071 0.929 11 C -0.219 4.219 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.082 4.082 22 C -0.228 4.228 23 H 0.138 0.862 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.156 0.844 27 H 0.145 0.855 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.161 0.839 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.349 -8.481 12.638 20.917 hybrid contribution 0.832 -0.161 -0.309 0.902 sum -13.517 -8.642 12.329 20.233 Atomic orbital electron populations 1.23368 0.76352 1.05642 1.02356 1.86042 1.23616 1.26610 1.88624 1.19178 0.92373 0.84916 0.96102 1.20561 0.92187 0.98569 1.07280 1.21042 1.00315 0.91514 0.96196 1.19737 0.94477 0.94283 1.05200 1.21344 0.98613 0.92767 0.84672 1.88035 1.79685 1.37364 1.25981 1.22162 0.92757 0.82819 0.98436 0.92875 1.22216 0.99170 0.98339 1.02206 1.19137 0.93622 0.95935 0.92473 1.21537 1.11986 1.20441 1.02065 0.92707 1.25902 1.00704 0.98203 0.95043 1.70096 1.38824 1.41847 1.06905 0.85474 0.78842 0.78858 0.78357 1.18745 1.20749 1.20046 1.21083 0.93296 0.98310 0.95536 1.21460 1.01254 0.91445 1.08610 0.86196 0.91311 0.91964 0.84396 0.85548 0.93270 0.91111 0.91284 0.90887 0.93154 0.99150 0.96849 0.92901 0.83875 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.77 10.50 -92.42 -0.97 -8.74 16 3 C 0.12 3.14 6.69 22.51 0.15 3.29 16 4 C -0.17 -4.79 9.99 22.37 0.22 -4.56 16 5 C -0.07 -2.28 9.69 22.26 0.22 -2.06 16 6 C -0.14 -4.28 5.51 -19.85 -0.11 -4.39 16 7 C 0.10 3.38 5.87 71.24 0.42 3.80 16 8 O -0.39 -16.81 9.72 -148.98 -1.45 -18.26 16 9 C 0.10 4.08 2.67 30.59 0.08 4.17 16 10 H 0.05 2.17 7.79 -2.39 -0.02 2.15 16 11 C -0.16 -5.50 9.53 71.98 0.69 -4.81 16 12 C 0.03 1.38 4.68 29.85 0.14 1.52 16 13 C -0.52 -30.75 8.88 25.60 0.23 -30.53 16 14 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 17 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 18 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 C -0.06 -1.69 9.69 22.26 0.22 -1.47 16 22 C -0.21 -4.91 9.04 22.37 0.20 -4.70 16 23 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 25 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 26 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 27 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.05 1.62 8.03 -2.39 -0.02 1.60 16 29 H 0.07 1.93 7.81 -2.39 -0.02 1.91 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.00 7.87 -2.39 -0.02 1.98 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.16 2.59 6.30 -2.91 -0.02 2.57 16 Total: -1.00 -71.05 315.93 4.95 -66.10 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.03 Total: 9.14 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 4.03 Total: -38.03 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.28 Total: -58.12 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -2.42 Total: -27.00 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.05 4.95 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.909 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds