Wall clock time and date at job start Mon Mar 30 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99876 * 2 1 4 4 C 1.38726 * 120.05416 * 179.97438 * 3 2 1 5 5 C 1.38152 * 119.94124 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05394 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94011 * 179.97438 * 6 5 4 8 8 O 1.42893 * 109.47375 * 90.00385 * 7 6 5 9 9 C 1.42906 * 114.00036 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.46799 * 329.98948 * 9 8 7 11 11 C 1.52997 * 109.47321 * 89.99767 * 9 8 7 12 12 C 1.53006 * 109.46748 * 209.99666 * 9 8 7 13 13 C 1.50703 * 109.47148 * 64.99897 * 12 9 8 14 14 H 1.08004 * 119.99894 * 0.02562 * 13 12 9 15 15 C 1.37874 * 120.00136 * 179.97438 * 13 12 9 16 16 N 1.31512 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47054 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46936 * 119.99726 * 17 15 13 20 20 H 1.48497 * 109.47316 * 239.99974 * 17 15 13 21 21 C 1.38260 * 120.11358 * 0.25412 * 6 5 4 22 22 C 1.38152 * 120.05587 * 359.45013 * 21 6 5 23 23 H 1.09002 * 109.46828 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47088 * 299.99925 * 1 2 3 25 25 H 1.08994 * 109.47236 * 60.00550 * 1 2 3 26 26 H 1.07995 * 120.02962 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.97461 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.47231 * 329.99549 * 7 6 5 29 29 H 1.09004 * 109.46785 * 210.00267 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99798 * 11 9 8 31 31 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 32 32 H 1.09004 * 109.47261 * 59.99970 * 11 9 8 33 33 H 1.08996 * 109.46945 * 184.99432 * 12 9 8 34 34 H 1.09000 * 109.47314 * 304.99554 * 12 9 8 35 35 H 0.97002 * 119.99753 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.97576 * 179.70037 * 21 6 5 37 37 H 1.08000 * 120.02586 * 180.25176 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 8 4.2025 5.4440 -1.3440 9 6 4.8499 6.7132 -1.4557 10 1 4.5883 7.3312 -0.5968 11 6 6.3658 6.5108 -1.4958 12 6 4.3937 7.4069 -2.7410 13 6 2.9217 7.7167 -2.6494 14 1 2.3671 7.4463 -1.7630 15 6 2.2833 8.3463 -3.6967 16 7 2.9590 8.6769 -4.7754 17 14 0.4586 8.7297 -3.5835 18 1 -0.0658 8.2595 -2.2762 19 1 0.2527 10.1957 -3.7005 20 1 -0.2615 8.0393 -4.6835 21 6 1.9210 3.6048 0.0069 22 6 1.2914 2.3751 0.0002 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 4.0208 0.3800 0.0005 27 1 5.1344 2.5753 0.0011 28 1 4.9436 4.9380 0.5170 29 1 3.3576 5.7460 0.5170 30 1 6.6908 6.0165 -0.5802 31 1 6.8595 7.4788 -1.5815 32 1 6.6273 5.8927 -2.3548 33 1 4.9526 8.3335 -2.8716 34 1 4.5746 6.7504 -3.5921 35 1 2.5100 9.1202 -5.5122 36 1 1.3340 4.5114 0.0122 37 1 0.2128 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:40 Heat of formation + Delta-G solvation = -71.622340 kcal Electronic energy + Delta-G solvation = -17820.675598 eV Core-core repulsion = 14949.141149 eV Total energy + Delta-G solvation = -2871.534449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.08127 -38.07459 -36.89461 -33.25585 -31.69625 -30.99376 -30.18403 -27.63335 -27.33401 -25.08058 -23.05077 -22.55614 -21.02310 -20.07157 -18.14287 -16.35037 -16.25035 -16.04437 -15.77474 -15.42437 -14.58246 -14.43440 -14.19483 -13.57005 -13.33200 -13.06802 -12.76155 -12.35116 -12.08652 -11.92876 -11.69815 -11.66377 -11.30346 -11.04311 -10.84455 -10.69509 -10.64546 -10.53104 -10.05215 -9.39312 -9.11056 -8.88914 -8.57671 -8.31474 -8.05699 -5.94052 -3.93887 1.44460 1.49318 3.22390 3.34182 3.41276 3.45118 3.77839 4.51013 4.66649 4.81480 4.93094 5.01471 5.04256 5.28299 5.32480 5.41224 5.43744 5.49803 5.63393 5.80979 5.82806 5.88326 6.02460 6.12728 6.17013 6.34014 6.37337 6.46193 6.77136 6.82376 6.83017 6.96715 7.38831 7.57004 7.70900 8.03910 8.21903 8.48903 9.10130 9.68064 11.17853 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.005529 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.108487 B = 5063.295495 C = 6211.852769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.122 3.878 4 C -0.157 4.157 5 C -0.062 4.062 6 C -0.112 4.112 7 C 0.104 3.896 8 O -0.361 6.361 9 C 0.090 3.910 10 H 0.047 0.953 11 C -0.172 4.172 12 C 0.023 3.977 13 C -0.504 4.504 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.055 4.055 22 C -0.210 4.210 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.259 0.741 36 H 0.129 0.871 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 -13.528 11.622 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.175 4.175 5 C -0.080 4.080 6 C -0.112 4.112 7 C 0.027 3.973 8 O -0.280 6.280 9 C 0.032 3.968 10 H 0.065 0.935 11 C -0.229 4.229 12 C -0.014 4.014 13 C -0.542 4.542 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.074 4.074 22 C -0.229 4.229 23 H 0.115 0.885 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.046 -13.742 11.294 17.819 hybrid contribution -1.232 0.551 0.090 1.352 sum -2.278 -13.192 11.384 17.573 Atomic orbital electron populations 1.23028 0.78604 1.03631 1.01495 1.86037 1.21254 1.27224 1.88969 1.19029 0.92395 0.83963 0.96892 1.20344 0.91265 0.98458 1.07477 1.20861 0.99841 0.90880 0.96462 1.19661 0.93573 0.94692 1.03320 1.21171 0.97514 0.91924 0.86726 1.88100 1.79967 1.37132 1.22839 1.22413 0.89462 0.83642 1.01233 0.93530 1.22331 0.98141 1.01527 1.00919 1.19251 0.96546 0.94742 0.90818 1.21168 0.94301 1.36824 1.01954 0.92701 1.24988 0.97991 0.96125 0.95483 1.69968 1.35820 1.41923 1.06156 0.86563 0.85843 0.77792 0.77965 1.19850 1.21143 1.21092 1.20940 0.94125 0.97238 0.95053 1.21201 0.99912 0.92289 1.09474 0.88477 0.92744 0.92534 0.85386 0.85344 0.93684 0.93095 0.94108 0.92191 0.92354 0.95198 0.95632 0.93163 0.85355 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.05 10.50 -19.44 -0.20 -4.25 16 3 C 0.12 1.70 6.69 -39.22 -0.26 1.43 16 4 C -0.16 -2.13 9.99 -39.43 -0.39 -2.52 16 5 C -0.06 -0.89 9.69 -39.60 -0.38 -1.27 16 6 C -0.11 -1.80 5.51 -104.60 -0.58 -2.37 16 7 C 0.10 1.76 5.87 36.00 0.21 1.97 16 8 O -0.36 -7.78 9.72 -35.23 -0.34 -8.12 16 9 C 0.09 1.92 2.67 -26.73 -0.07 1.85 16 10 H 0.05 0.96 7.79 -51.93 -0.40 0.56 16 11 C -0.17 -3.04 9.53 37.16 0.35 -2.68 16 12 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 13 C -0.50 -14.52 8.88 -34.44 -0.31 -14.83 16 14 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 C -0.06 -0.86 9.69 -39.60 -0.38 -1.24 16 22 C -0.21 -2.91 9.04 -39.43 -0.36 -3.27 16 23 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.05 0.66 7.81 -51.93 -0.41 0.26 16 29 H 0.05 0.84 8.03 -51.93 -0.42 0.43 16 30 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.13 1.45 6.30 -52.49 -0.33 1.12 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -32.49 315.92 -7.16 -39.65 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.69 Total: -2.69 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -1.40 Total: -19.72 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.55 Total: -12.37 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.49 -7.16 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.976 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds