Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99876 * 2 1 4 4 C 1.38726 * 120.05416 * 179.97438 * 3 2 1 5 5 C 1.38152 * 119.94124 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05394 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94011 * 179.97438 * 6 5 4 8 8 O 1.42893 * 109.47375 * 90.00385 * 7 6 5 9 9 C 1.42906 * 114.00036 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.46799 * 329.98948 * 9 8 7 11 11 C 1.52997 * 109.47321 * 89.99767 * 9 8 7 12 12 C 1.53006 * 109.46748 * 209.99666 * 9 8 7 13 13 C 1.50703 * 109.47148 * 64.99897 * 12 9 8 14 14 H 1.08004 * 119.99894 * 0.02562 * 13 12 9 15 15 C 1.37874 * 120.00136 * 179.97438 * 13 12 9 16 16 N 1.31512 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47054 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46936 * 119.99726 * 17 15 13 20 20 H 1.48497 * 109.47316 * 239.99974 * 17 15 13 21 21 C 1.38260 * 120.11358 * 0.25412 * 6 5 4 22 22 C 1.38152 * 120.05587 * 359.45013 * 21 6 5 23 23 H 1.09002 * 109.46828 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47088 * 299.99925 * 1 2 3 25 25 H 1.08994 * 109.47236 * 60.00550 * 1 2 3 26 26 H 1.07995 * 120.02962 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.97461 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.47231 * 329.99549 * 7 6 5 29 29 H 1.09004 * 109.46785 * 210.00267 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99798 * 11 9 8 31 31 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 32 32 H 1.09004 * 109.47261 * 59.99970 * 11 9 8 33 33 H 1.08996 * 109.46945 * 184.99432 * 12 9 8 34 34 H 1.09000 * 109.47314 * 304.99554 * 12 9 8 35 35 H 0.97002 * 119.99753 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.97576 * 179.70037 * 21 6 5 37 37 H 1.08000 * 120.02586 * 180.25176 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 8 4.2025 5.4440 -1.3440 9 6 4.8499 6.7132 -1.4557 10 1 4.5883 7.3312 -0.5968 11 6 6.3658 6.5108 -1.4958 12 6 4.3937 7.4069 -2.7410 13 6 2.9217 7.7167 -2.6494 14 1 2.3671 7.4463 -1.7630 15 6 2.2833 8.3463 -3.6967 16 7 2.9590 8.6769 -4.7754 17 14 0.4586 8.7297 -3.5835 18 1 -0.0658 8.2595 -2.2762 19 1 0.2527 10.1957 -3.7005 20 1 -0.2615 8.0393 -4.6835 21 6 1.9210 3.6048 0.0069 22 6 1.2914 2.3751 0.0002 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 4.0208 0.3800 0.0005 27 1 5.1344 2.5753 0.0011 28 1 4.9436 4.9380 0.5170 29 1 3.3576 5.7460 0.5170 30 1 6.6908 6.0165 -0.5802 31 1 6.8595 7.4788 -1.5815 32 1 6.6273 5.8927 -2.3548 33 1 4.9526 8.3335 -2.8716 34 1 4.5746 6.7504 -3.5921 35 1 2.5100 9.1202 -5.5122 36 1 1.3340 4.5114 0.0122 37 1 0.2128 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = -91.084830 kcal Electronic energy + Delta-G solvation = -17821.519554 eV Core-core repulsion = 14949.141149 eV Total energy + Delta-G solvation = -2872.378406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09700 -39.41220 -38.16595 -35.27740 -33.36258 -32.08579 -31.50614 -29.26970 -28.46290 -26.31015 -25.04748 -23.61119 -22.14294 -21.83116 -19.11583 -18.49974 -17.61343 -17.30387 -16.84475 -16.63634 -16.35570 -15.78930 -15.40040 -14.84362 -14.57078 -14.34995 -14.08009 -13.89855 -13.51468 -13.38988 -13.30430 -13.03822 -12.74248 -12.64019 -12.41273 -12.29812 -11.99354 -11.78746 -11.74116 -11.24312 -11.18376 -10.56506 -10.20659 -9.96305 -9.14289 -8.17507 -6.25664 0.34820 0.38779 1.37933 1.38948 1.51578 2.35814 2.41861 2.61768 3.14345 3.31443 3.81278 3.92069 4.02056 4.20451 4.29437 4.34787 4.38495 4.41263 4.46708 4.56306 4.59395 4.65798 4.73998 4.75423 4.91238 5.07668 5.20261 5.26942 5.28585 5.36182 5.45816 5.54636 5.69041 5.77321 5.82325 6.25749 6.41874 6.63686 6.87461 7.41119 8.94961 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.005529 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.108487 B = 5063.295495 C = 6211.852769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.119 3.881 4 C -0.162 4.162 5 C -0.063 4.063 6 C -0.137 4.137 7 C 0.102 3.898 8 O -0.390 6.390 9 C 0.096 3.904 10 H 0.053 0.947 11 C -0.162 4.162 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.054 0.946 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.281 1.281 21 C -0.074 4.074 22 C -0.213 4.213 23 H 0.123 0.877 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.013 0.987 34 H -0.010 1.010 35 H 0.262 0.738 36 H 0.123 0.877 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -14.685 12.938 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.073 3.927 4 C -0.181 4.181 5 C -0.081 4.081 6 C -0.137 4.137 7 C 0.026 3.974 8 O -0.311 6.311 9 C 0.038 3.962 10 H 0.071 0.929 11 C -0.220 4.220 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.207 1.207 21 C -0.092 4.092 22 C -0.232 4.232 23 H 0.141 0.859 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.166 0.834 27 H 0.165 0.835 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.008 0.992 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.784 -14.909 12.629 19.620 hybrid contribution -1.042 0.814 -0.310 1.359 sum -2.827 -14.094 12.320 18.932 Atomic orbital electron populations 1.23342 0.76599 1.05639 1.02106 1.86033 1.23358 1.26486 1.88642 1.19222 0.92814 0.84467 0.96157 1.20643 0.91605 0.99022 1.06795 1.21076 1.00781 0.90509 0.95752 1.19737 0.93978 0.94793 1.05174 1.21345 0.98977 0.92406 0.84670 1.88035 1.80367 1.36680 1.25979 1.22162 0.91742 0.83828 0.98428 0.92881 1.22218 0.95189 1.02326 1.02228 1.19139 0.95691 0.93878 0.92477 1.21530 0.95625 1.36792 1.02061 0.92729 1.25911 1.03064 0.95887 0.95042 1.70096 1.37946 1.42671 1.06960 0.85465 0.79704 0.77966 0.78341 1.18714 1.20072 1.20718 1.21055 0.94305 0.97836 0.96023 1.21397 1.01073 0.91732 1.08989 0.85902 0.91628 0.92381 0.83392 0.83507 0.91088 0.93300 0.90868 0.91291 0.93161 0.96858 0.99150 0.92896 0.85922 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.66 10.50 -92.48 -0.97 -8.63 16 3 C 0.12 3.11 6.69 22.51 0.15 3.26 16 4 C -0.16 -4.12 9.99 22.37 0.22 -3.89 16 5 C -0.06 -1.70 9.69 22.26 0.22 -1.49 16 6 C -0.14 -4.27 5.51 -19.85 -0.11 -4.38 16 7 C 0.10 3.38 5.87 71.24 0.42 3.80 16 8 O -0.39 -16.82 9.72 -148.98 -1.45 -18.26 16 9 C 0.10 4.09 2.67 30.60 0.08 4.17 16 10 H 0.05 2.17 7.79 -2.39 -0.02 2.15 16 11 C -0.16 -5.53 9.53 71.98 0.69 -4.85 16 12 C 0.03 1.37 4.68 29.85 0.14 1.51 16 13 C -0.52 -30.63 8.88 25.60 0.23 -30.40 16 14 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 15 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 16 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 17 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 C -0.07 -2.27 9.69 22.25 0.22 -2.05 16 22 C -0.21 -5.66 9.04 22.37 0.20 -5.46 16 23 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 25 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 27 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 28 H 0.07 1.94 7.81 -2.39 -0.02 1.92 16 29 H 0.05 1.60 8.03 -2.39 -0.02 1.58 16 30 H 0.07 2.02 7.87 -2.39 -0.02 2.00 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 34 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.15 3.12 6.30 -2.91 -0.02 3.10 16 Total: -1.00 -70.47 315.92 4.95 -65.52 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.03 Total: 9.86 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 4.03 Total: -38.07 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.28 Total: -57.96 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -2.42 Total: -26.90 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.47 4.95 -65.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.560 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds