Wall clock time and date at job start Mon Mar 30 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46888 * 2 1 4 4 C 1.53004 * 109.47157 * 240.00435 * 2 1 3 5 5 C 1.50694 * 109.46873 * 174.99733 * 4 2 1 6 6 H 1.07991 * 120.00690 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99449 * 179.72574 * 5 4 2 8 8 N 1.31513 * 120.00061 * 0.27383 * 7 5 4 9 9 Si 1.86798 * 119.99822 * 180.27436 * 7 5 4 10 10 H 1.48501 * 109.47109 * 89.99993 * 9 7 5 11 11 H 1.48502 * 109.47192 * 209.99611 * 9 7 5 12 12 H 1.48500 * 109.47207 * 329.99918 * 9 7 5 13 13 O 1.42898 * 109.47571 * 120.00328 * 2 1 3 14 14 C 1.35908 * 116.99672 * 275.20221 * 13 2 1 15 15 C 1.38749 * 120.05705 * 5.40179 * 14 13 2 16 16 C 1.38123 * 119.93996 * 179.70239 * 15 14 13 17 17 C 1.38281 * 120.05733 * 0.59177 * 16 15 14 18 18 C 1.38246 * 120.11231 * 359.68540 * 17 16 15 19 19 C 1.38166 * 120.05277 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.02665 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46987 * 264.97697 * 20 19 18 22 22 O 1.42899 * 109.47099 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47479 * 59.99800 * 1 2 3 24 24 H 1.08999 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47256 * 299.99673 * 1 2 3 26 26 H 1.09004 * 109.46925 * 54.99753 * 4 2 1 27 27 H 1.08998 * 109.46494 * 294.99728 * 4 2 1 28 28 H 0.97000 * 119.99542 * 180.02562 * 8 7 5 29 29 H 1.07998 * 120.02746 * 359.97438 * 15 14 13 30 30 H 1.08004 * 119.97047 * 180.29902 * 16 15 14 31 31 H 1.08006 * 119.94548 * 179.69632 * 17 16 15 32 32 H 1.07998 * 119.97127 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.46948 * 24.97256 * 20 19 18 34 34 H 1.08996 * 109.47398 * 144.97874 * 20 19 18 35 35 H 1.08991 * 109.47184 * 299.99712 * 21 20 19 36 36 H 1.09007 * 109.47273 * 60.00475 * 21 20 19 37 37 H 0.96696 * 114.00143 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6147 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2307 -1.1977 -2.3552 8 7 3.5767 -1.8420 -3.2969 9 14 6.0930 -1.0724 -2.4299 10 1 6.6958 -2.2254 -1.7140 11 1 6.5336 -1.0851 -3.8480 12 1 6.5302 0.1928 -1.7870 13 8 2.0064 -0.6737 1.1667 14 6 2.1086 0.0616 2.3052 15 6 1.6531 1.3719 2.3294 16 6 1.7525 2.1150 3.4895 17 6 2.3165 1.5580 4.6225 18 6 2.7763 0.2544 4.5993 19 6 2.6738 -0.4950 3.4431 20 6 3.1746 -1.9161 3.4186 21 6 4.6042 -1.9436 2.8740 22 8 5.0794 -3.2911 2.8513 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6053 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2056 28 1 4.0615 -2.2524 -4.0300 29 1 1.2172 1.8091 1.4432 30 1 1.3937 3.1335 3.5103 31 1 2.3978 2.1422 5.5273 32 1 3.2161 -0.1785 5.4856 33 1 3.1632 -2.3228 4.4298 34 1 2.5301 -2.5175 2.7776 35 1 4.6157 -1.5369 1.8628 36 1 5.2489 -1.3422 3.5150 37 1 5.9819 -3.3843 2.5169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:52 Heat of formation + Delta-G solvation = -83.537175 kcal Electronic energy + Delta-G solvation = -18606.001753 eV Core-core repulsion = 15733.950638 eV Total energy + Delta-G solvation = -2872.051115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96111 -37.36782 -36.48303 -33.56687 -32.83600 -31.44099 -29.67128 -27.91126 -27.46601 -23.53362 -23.21056 -22.44175 -20.70040 -19.85574 -17.67981 -16.98515 -16.38784 -15.76996 -15.25032 -14.68186 -14.59677 -14.39793 -14.14484 -13.69456 -13.23673 -12.74424 -12.68104 -12.14122 -11.94030 -11.80166 -11.65570 -11.43405 -11.14607 -11.01394 -10.93801 -10.76338 -10.62173 -10.42241 -9.99291 -9.56801 -9.39211 -9.13673 -8.61176 -8.40898 -7.67882 -6.03812 -4.05046 1.53972 1.76211 3.29293 3.35712 3.38458 3.89056 4.00914 4.42966 4.59007 5.04884 5.14306 5.31685 5.33429 5.39429 5.54897 5.59313 5.67530 5.73126 5.75738 5.82714 5.89005 6.00687 6.17008 6.22625 6.31690 6.46085 6.55225 6.61321 6.72040 6.75890 6.84042 7.08723 7.48525 7.58051 7.92419 7.93475 8.14298 8.34473 8.98117 9.57929 11.07746 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.007939 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.431870 B = 3526.239803 C = 4400.392544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.512 4.512 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.286 6.286 14 C 0.156 3.844 15 C -0.215 4.215 16 C -0.083 4.083 17 C -0.174 4.174 18 C -0.079 4.079 19 C -0.128 4.128 20 C -0.064 4.064 21 C 0.080 3.920 22 O -0.577 6.577 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 4.911 13.024 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.198 6.198 14 C 0.108 3.892 15 C -0.234 4.234 16 C -0.101 4.101 17 C -0.193 4.193 18 C -0.097 4.097 19 C -0.129 4.129 20 C -0.102 4.102 21 C 0.002 3.998 22 O -0.382 6.382 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.593 4.490 13.035 14.028 hybrid contribution 1.476 0.492 -0.450 1.620 sum -1.117 4.982 12.585 13.581 Atomic orbital electron populations 1.22415 0.97049 1.02629 1.01422 1.22878 0.91822 0.97093 0.85174 0.92020 1.19261 0.96576 0.96516 0.88723 1.21079 0.91639 1.34338 1.07992 0.92734 1.24967 0.98339 0.95276 0.95681 1.69944 1.35508 1.35804 1.12218 0.86620 0.85919 0.78449 0.77217 1.20569 1.21195 1.19942 1.86290 1.79608 1.37924 1.16014 1.19067 0.92545 0.90106 0.87478 1.21373 1.07383 0.94706 0.99905 1.20882 0.97676 0.99044 0.92508 1.20873 1.03935 0.95866 0.98588 1.20807 0.98363 0.93905 0.96634 1.19055 1.04448 0.96948 0.92419 1.20177 0.95583 0.92681 1.01719 1.22166 0.94202 0.82661 1.00721 1.86395 1.35227 1.27949 1.88628 0.91422 0.91904 0.93290 0.94418 0.95263 0.92923 0.85202 0.86427 0.86545 0.86006 0.91313 0.89745 0.91962 0.94495 0.77619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.17 37.16 0.34 -2.68 16 2 C 0.09 1.76 2.17 -26.73 -0.06 1.71 16 3 H 0.06 1.24 6.32 -51.93 -0.33 0.91 16 4 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.51 -14.27 8.88 -34.44 -0.31 -14.57 16 6 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 O -0.29 -6.01 8.69 -19.45 -0.17 -6.18 16 14 C 0.16 2.83 6.57 -39.22 -0.26 2.58 16 15 C -0.21 -3.46 8.24 -39.43 -0.32 -3.78 16 16 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 17 C -0.17 -2.25 10.04 -39.56 -0.40 -2.64 16 18 C -0.08 -1.09 9.68 -39.60 -0.38 -1.47 16 19 C -0.13 -2.10 5.15 -104.47 -0.54 -2.64 16 20 C -0.06 -1.06 5.44 -27.88 -0.15 -1.21 16 21 C 0.08 1.34 7.03 37.16 0.26 1.60 16 22 O -0.58 -9.54 13.66 -35.23 -0.48 -10.02 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.74 6.90 -51.93 -0.36 0.38 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.13 2.00 5.43 -52.49 -0.28 1.72 16 30 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.38 4.65 9.12 45.56 0.42 5.07 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -31.17 311.61 -7.40 -38.56 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.72 Total: 4.77 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -2.44 Total: -22.55 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.65 Total: -16.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.17 -7.40 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.972 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds