Wall clock time and date at job start Mon Mar 30 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46888 * 2 1 4 4 C 1.53004 * 109.47157 * 240.00435 * 2 1 3 5 5 C 1.50694 * 109.46873 * 174.99733 * 4 2 1 6 6 H 1.07991 * 120.00690 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99449 * 179.72574 * 5 4 2 8 8 N 1.31513 * 120.00061 * 0.27383 * 7 5 4 9 9 Si 1.86798 * 119.99822 * 180.27436 * 7 5 4 10 10 H 1.48501 * 109.47109 * 89.99993 * 9 7 5 11 11 H 1.48502 * 109.47192 * 209.99611 * 9 7 5 12 12 H 1.48500 * 109.47207 * 329.99918 * 9 7 5 13 13 O 1.42898 * 109.47571 * 120.00328 * 2 1 3 14 14 C 1.35908 * 116.99672 * 275.20221 * 13 2 1 15 15 C 1.38749 * 120.05705 * 5.40179 * 14 13 2 16 16 C 1.38123 * 119.93996 * 179.70239 * 15 14 13 17 17 C 1.38281 * 120.05733 * 0.59177 * 16 15 14 18 18 C 1.38246 * 120.11231 * 359.68540 * 17 16 15 19 19 C 1.38166 * 120.05277 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.02665 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46987 * 264.97697 * 20 19 18 22 22 O 1.42899 * 109.47099 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47479 * 59.99800 * 1 2 3 24 24 H 1.08999 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47256 * 299.99673 * 1 2 3 26 26 H 1.09004 * 109.46925 * 54.99753 * 4 2 1 27 27 H 1.08998 * 109.46494 * 294.99728 * 4 2 1 28 28 H 0.97000 * 119.99542 * 180.02562 * 8 7 5 29 29 H 1.07998 * 120.02746 * 359.97438 * 15 14 13 30 30 H 1.08004 * 119.97047 * 180.29902 * 16 15 14 31 31 H 1.08006 * 119.94548 * 179.69632 * 17 16 15 32 32 H 1.07998 * 119.97127 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.46948 * 24.97256 * 20 19 18 34 34 H 1.08996 * 109.47398 * 144.97874 * 20 19 18 35 35 H 1.08991 * 109.47184 * 299.99712 * 21 20 19 36 36 H 1.09007 * 109.47273 * 60.00475 * 21 20 19 37 37 H 0.96696 * 114.00143 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6147 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2307 -1.1977 -2.3552 8 7 3.5767 -1.8420 -3.2969 9 14 6.0930 -1.0724 -2.4299 10 1 6.6958 -2.2254 -1.7140 11 1 6.5336 -1.0851 -3.8480 12 1 6.5302 0.1928 -1.7870 13 8 2.0064 -0.6737 1.1667 14 6 2.1086 0.0616 2.3052 15 6 1.6531 1.3719 2.3294 16 6 1.7525 2.1150 3.4895 17 6 2.3165 1.5580 4.6225 18 6 2.7763 0.2544 4.5993 19 6 2.6738 -0.4950 3.4431 20 6 3.1746 -1.9161 3.4186 21 6 4.6042 -1.9436 2.8740 22 8 5.0794 -3.2911 2.8513 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6053 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2056 28 1 4.0615 -2.2524 -4.0300 29 1 1.2172 1.8091 1.4432 30 1 1.3937 3.1335 3.5103 31 1 2.3978 2.1422 5.5273 32 1 3.2161 -0.1785 5.4856 33 1 3.1632 -2.3228 4.4298 34 1 2.5301 -2.5175 2.7776 35 1 4.6157 -1.5369 1.8628 36 1 5.2489 -1.3422 3.5150 37 1 5.9819 -3.3843 2.5169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:52 Heat of formation + Delta-G solvation = -103.881987 kcal Electronic energy + Delta-G solvation = -18606.883971 eV Core-core repulsion = 15733.950638 eV Total energy + Delta-G solvation = -2872.933332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26418 -38.73411 -37.76869 -35.46348 -34.21637 -33.16615 -30.85358 -29.37837 -29.13229 -25.36798 -24.46058 -23.91057 -21.93156 -21.38924 -19.04016 -18.53163 -18.29770 -17.14585 -16.56875 -16.33810 -16.10104 -15.73255 -15.43479 -15.05584 -14.73756 -14.22469 -13.95869 -13.75477 -13.62008 -13.38450 -13.13072 -12.91686 -12.73860 -12.67708 -12.36091 -12.23758 -12.15391 -11.86211 -11.65386 -11.27209 -11.07061 -10.89038 -10.60352 -9.74352 -8.94390 -8.22392 -6.31211 0.41230 0.59927 1.35550 1.36781 1.47474 2.38013 2.49242 2.84709 3.12408 3.39442 3.89241 3.97525 4.06727 4.19348 4.22920 4.28395 4.35439 4.40545 4.47623 4.56735 4.62858 4.72539 4.83896 4.97219 5.00412 5.05809 5.15794 5.24360 5.35731 5.45709 5.54699 5.62206 5.65838 5.74511 6.03066 6.17628 6.72649 6.80617 6.81970 7.35924 8.89578 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.007939 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.431870 B = 3526.239803 C = 4400.392544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.064 0.936 4 C 0.029 3.971 5 C -0.526 4.526 6 H 0.050 0.950 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.265 1.265 13 O -0.316 6.316 14 C 0.117 3.883 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.162 4.162 18 C -0.076 4.076 19 C -0.143 4.143 20 C -0.061 4.061 21 C 0.085 3.915 22 O -0.590 6.590 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.024 0.976 27 H -0.005 1.005 28 H 0.264 0.736 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 6.656 15.604 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.008 4.008 5 C -0.564 4.564 6 H 0.068 0.932 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.189 1.189 13 O -0.230 6.230 14 C 0.071 3.929 15 C -0.245 4.245 16 C -0.099 4.099 17 C -0.180 4.180 18 C -0.094 4.094 19 C -0.144 4.144 20 C -0.098 4.098 21 C 0.007 3.993 22 O -0.398 6.398 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.013 0.987 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.785 6.244 15.629 16.925 hybrid contribution 1.226 -0.026 -1.149 1.680 sum -0.559 6.218 14.481 15.769 Atomic orbital electron populations 1.22306 0.94353 1.02632 1.03129 1.22543 0.93825 0.95992 0.83722 0.91782 1.19100 0.95680 0.94898 0.91075 1.21386 0.93057 1.34152 1.07790 0.93188 1.25856 1.03441 0.94846 0.95275 1.70068 1.37495 1.36713 1.12891 0.85571 0.79857 0.78883 0.77570 1.19837 1.20393 1.18924 1.86205 1.80822 1.39057 1.16924 1.19431 0.95116 0.91314 0.87050 1.21510 1.07697 0.94111 1.01177 1.21289 0.96800 1.00195 0.91659 1.21358 1.01587 0.95547 0.99538 1.21177 0.97615 0.94195 0.96375 1.19241 1.04981 0.97097 0.93041 1.20139 0.94637 0.92907 1.02161 1.22088 0.95207 0.82924 0.99040 1.86359 1.36823 1.27931 1.88732 0.90102 0.92755 0.91043 0.95798 0.98675 0.92723 0.85257 0.83308 0.82767 0.82994 0.88926 0.93025 0.95890 0.91763 0.75687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.74 9.17 71.98 0.66 -5.08 16 2 C 0.09 4.05 2.17 30.59 0.07 4.12 16 3 H 0.06 2.65 6.32 -2.39 -0.02 2.63 16 4 C 0.03 1.57 4.68 29.85 0.14 1.71 16 5 C -0.53 -30.44 8.88 25.60 0.23 -30.22 16 6 H 0.05 2.87 7.74 -2.92 -0.02 2.85 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 13 O -0.32 -13.91 8.69 -92.52 -0.80 -14.71 16 14 C 0.12 4.27 6.57 22.50 0.15 4.42 16 15 C -0.23 -6.99 8.24 22.36 0.18 -6.80 16 16 C -0.08 -1.94 10.04 22.25 0.22 -1.71 16 17 C -0.16 -3.45 10.04 22.28 0.22 -3.22 16 18 C -0.08 -1.83 9.68 22.25 0.22 -1.61 16 19 C -0.14 -4.55 5.15 -19.77 -0.10 -4.66 16 20 C -0.06 -2.00 5.44 29.85 0.16 -1.84 16 21 C 0.09 2.85 7.03 71.98 0.51 3.36 16 22 O -0.59 -19.38 13.66 -148.98 -2.03 -21.41 16 23 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 2.12 6.90 -2.39 -0.02 2.10 16 26 H 0.02 1.31 8.14 -2.38 -0.02 1.29 16 27 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.13 3.88 5.43 -2.91 -0.02 3.87 16 30 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.09 2.52 8.05 -2.38 -0.02 2.50 16 34 H 0.05 2.00 7.69 -2.39 -0.02 1.98 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.39 9.48 9.12 -74.06 -0.68 8.80 16 Total: -1.00 -70.07 311.61 2.97 -67.10 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.38 Total: 19.67 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 3.12 Total: -40.87 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.28 Total: -56.70 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -2.84 Total: -36.12 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.07 2.97 -67.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.779 kcal (2) G-P(sol) polarization free energy of solvation -70.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds