Wall clock time and date at job start Mon Mar 30 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47035 * 2 1 4 4 C 1.52998 * 109.47406 * 120.00352 * 2 1 3 5 5 C 1.50705 * 109.46884 * 185.00078 * 4 2 1 6 6 H 1.08000 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99904 * 180.27576 * 5 4 2 8 8 N 1.31518 * 119.99674 * 359.72244 * 7 5 4 9 9 Si 1.86795 * 120.00276 * 179.72300 * 7 5 4 10 10 H 1.48498 * 109.46974 * 59.99675 * 9 7 5 11 11 H 1.48502 * 109.47342 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47020 * 299.99988 * 9 7 5 13 13 O 1.42901 * 109.47205 * 240.00429 * 2 1 3 14 14 C 1.35901 * 117.00318 * 84.95167 * 13 2 1 15 15 C 1.38750 * 120.05322 * 354.52584 * 14 13 2 16 16 C 1.38127 * 119.94628 * 179.97438 * 15 14 13 17 17 C 1.38293 * 120.05184 * 0.02562 * 16 15 14 18 18 C 1.38240 * 120.11130 * 0.02562 * 17 16 15 19 19 C 1.38166 * 120.05859 * 359.67884 * 18 17 16 20 20 C 1.50700 * 120.03368 * 180.29562 * 19 18 17 21 21 C 1.52995 * 109.47269 * 265.32078 * 20 19 18 22 22 O 1.42899 * 109.46862 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46920 * 299.99635 * 1 2 3 25 25 H 1.08991 * 109.47578 * 59.99930 * 1 2 3 26 26 H 1.08995 * 109.47291 * 64.99938 * 4 2 1 27 27 H 1.09002 * 109.46848 * 304.99287 * 4 2 1 28 28 H 0.97002 * 119.99469 * 180.02562 * 8 7 5 29 29 H 1.08001 * 120.03255 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.97444 * 179.97438 * 16 15 14 31 31 H 1.07998 * 119.94192 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.97237 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46671 * 25.32227 * 20 19 18 34 34 H 1.08997 * 109.46956 * 145.31672 * 20 19 18 35 35 H 1.08994 * 109.47201 * 300.00012 * 21 20 19 36 36 H 1.09002 * 109.47031 * 60.00032 * 21 20 19 37 37 H 0.96705 * 113.99852 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3125 6 1 4.0790 -0.0861 0.5390 7 6 4.2310 -1.1980 2.3548 8 7 3.5771 -1.8423 3.2965 9 14 6.0933 -1.0727 2.4293 10 1 6.4912 0.3566 2.4913 11 1 6.5888 -1.7769 3.6393 12 1 6.6803 -1.6978 1.2170 13 8 2.0063 -0.6736 -1.1668 14 6 2.1115 0.0625 -2.3044 15 6 1.6577 1.3734 -2.3284 16 6 1.7662 2.1196 -3.4856 17 6 2.3262 1.5609 -4.6200 18 6 2.7782 0.2547 -4.5990 19 6 2.6775 -0.4940 -3.4421 20 6 3.1765 -1.9158 -3.4179 21 6 2.0155 -2.8687 -3.7091 22 8 2.4889 -4.2169 -3.6867 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7517 -1.7715 1.2055 27 1 1.6055 -0.2617 2.1369 28 1 4.0618 -2.2522 4.0299 29 1 1.2198 1.8101 -1.4429 30 1 1.4127 3.1399 -3.5049 31 1 2.4098 2.1459 -5.5240 32 1 3.2148 -0.1795 -5.4862 33 1 3.9495 -2.0424 -4.1759 34 1 3.5916 -2.1384 -2.4349 35 1 1.2426 -2.7420 -2.9512 36 1 1.6005 -2.6460 -4.6921 37 1 1.8048 -4.8769 -3.8642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:55 Heat of formation + Delta-G solvation = -83.029461 kcal Electronic energy + Delta-G solvation = -18468.663049 eV Core-core repulsion = 15596.633951 eV Total energy + Delta-G solvation = -2872.029099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96393 -37.39110 -36.62721 -33.56155 -32.85784 -31.43845 -29.68029 -27.95602 -27.46072 -23.52292 -23.26466 -22.45650 -20.74698 -19.83894 -17.68974 -17.13989 -16.36431 -15.78529 -15.27473 -14.72620 -14.58095 -14.47380 -14.17591 -13.72307 -13.24524 -12.79365 -12.67687 -12.13954 -11.91931 -11.81595 -11.66361 -11.40866 -11.20239 -11.01652 -11.00043 -10.71224 -10.60743 -10.40960 -9.99558 -9.73348 -9.38306 -9.12201 -8.61271 -8.37462 -7.68235 -6.00894 -4.02241 1.53779 1.76135 3.35825 3.39516 3.43625 3.88619 4.00948 4.45839 4.47416 5.04397 5.13376 5.31092 5.33142 5.36506 5.48570 5.54115 5.61215 5.64285 5.74364 5.80203 5.82897 5.99612 6.12473 6.19434 6.22756 6.48985 6.55201 6.60642 6.71864 6.76201 6.84054 7.08740 7.49513 7.59046 7.78070 7.95436 8.14614 8.36774 9.01015 9.61236 11.10519 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.007005 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.634730 B = 3996.224886 C = 4434.971812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.027 3.973 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 O -0.286 6.286 14 C 0.156 3.844 15 C -0.215 4.215 16 C -0.083 4.083 17 C -0.174 4.174 18 C -0.079 4.079 19 C -0.127 4.127 20 C -0.071 4.071 21 C 0.086 3.914 22 O -0.574 6.574 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.038 0.962 28 H 0.262 0.738 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 3.529 -14.305 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 O -0.198 6.198 14 C 0.108 3.892 15 C -0.234 4.234 16 C -0.101 4.101 17 C -0.193 4.193 18 C -0.097 4.097 19 C -0.128 4.128 20 C -0.108 4.108 21 C 0.008 3.992 22 O -0.379 6.379 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.216 3.520 -13.939 15.293 hybrid contribution 0.362 0.110 0.080 0.387 sum -4.854 3.630 -13.859 15.126 Atomic orbital electron populations 1.22410 0.97067 1.02547 1.01431 1.22883 0.91760 0.97158 0.85200 0.91984 1.19253 0.96588 0.96462 0.88707 1.21073 0.91640 1.34480 1.08066 0.92685 1.24965 0.98441 0.95181 0.95655 1.69940 1.35656 1.35815 1.12199 0.86654 0.85741 0.78194 0.77468 1.20288 1.21256 1.20081 1.86290 1.79598 1.37854 1.16067 1.19070 0.92513 0.90178 0.87433 1.21375 1.07397 0.94644 0.99952 1.20887 0.97641 0.99020 0.92554 1.20873 1.04013 0.95795 0.98582 1.20808 0.98492 0.93988 0.96434 1.19041 1.04550 0.96842 0.92352 1.20235 0.97024 0.89169 1.04354 1.22116 0.96526 0.81505 0.99041 1.86485 1.40004 1.16312 1.95095 0.91974 0.91396 0.93316 0.95308 0.94436 0.92888 0.85201 0.86422 0.86544 0.86011 0.91090 0.89029 0.93138 0.94348 0.77864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.17 37.16 0.34 -2.64 16 2 C 0.09 1.76 2.17 -26.73 -0.06 1.71 16 3 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 4 C 0.03 0.68 4.68 -27.88 -0.13 0.55 16 5 C -0.51 -14.63 8.88 -34.44 -0.31 -14.94 16 6 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 O -0.29 -6.02 8.69 -19.43 -0.17 -6.19 16 14 C 0.16 2.84 6.57 -39.22 -0.26 2.58 16 15 C -0.21 -3.46 8.24 -39.43 -0.33 -3.78 16 16 C -0.08 -1.13 10.04 -39.60 -0.40 -1.53 16 17 C -0.17 -2.25 10.04 -39.56 -0.40 -2.64 16 18 C -0.08 -1.09 9.68 -39.61 -0.38 -1.47 16 19 C -0.13 -2.09 5.15 -104.47 -0.54 -2.63 16 20 C -0.07 -1.16 5.44 -27.89 -0.15 -1.31 16 21 C 0.09 1.26 7.03 37.16 0.26 1.52 16 22 O -0.57 -8.42 13.66 -35.23 -0.48 -8.91 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.72 6.91 -51.93 -0.36 0.37 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.13 2.00 5.43 -52.49 -0.28 1.72 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.09 1.80 7.69 -51.93 -0.40 1.40 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.38 3.56 9.12 45.56 0.42 3.98 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -31.93 311.64 -7.40 -39.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.72 Total: 3.09 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.44 Total: -22.98 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.65 Total: -15.09 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.93 -7.40 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.701 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds