Wall clock time and date at job start Mon Mar 30 2020 06:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47035 * 2 1 4 4 C 1.52998 * 109.47406 * 120.00352 * 2 1 3 5 5 C 1.50705 * 109.46884 * 185.00078 * 4 2 1 6 6 H 1.08000 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99904 * 180.27576 * 5 4 2 8 8 N 1.31518 * 119.99674 * 359.72244 * 7 5 4 9 9 Si 1.86795 * 120.00276 * 179.72300 * 7 5 4 10 10 H 1.48498 * 109.46974 * 59.99675 * 9 7 5 11 11 H 1.48502 * 109.47342 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47020 * 299.99988 * 9 7 5 13 13 O 1.42901 * 109.47205 * 240.00429 * 2 1 3 14 14 C 1.35901 * 117.00318 * 84.95167 * 13 2 1 15 15 C 1.38750 * 120.05322 * 354.52584 * 14 13 2 16 16 C 1.38127 * 119.94628 * 179.97438 * 15 14 13 17 17 C 1.38293 * 120.05184 * 0.02562 * 16 15 14 18 18 C 1.38240 * 120.11130 * 0.02562 * 17 16 15 19 19 C 1.38166 * 120.05859 * 359.67884 * 18 17 16 20 20 C 1.50700 * 120.03368 * 180.29562 * 19 18 17 21 21 C 1.52995 * 109.47269 * 265.32078 * 20 19 18 22 22 O 1.42899 * 109.46862 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46920 * 299.99635 * 1 2 3 25 25 H 1.08991 * 109.47578 * 59.99930 * 1 2 3 26 26 H 1.08995 * 109.47291 * 64.99938 * 4 2 1 27 27 H 1.09002 * 109.46848 * 304.99287 * 4 2 1 28 28 H 0.97002 * 119.99469 * 180.02562 * 8 7 5 29 29 H 1.08001 * 120.03255 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.97444 * 179.97438 * 16 15 14 31 31 H 1.07998 * 119.94192 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.97237 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46671 * 25.32227 * 20 19 18 34 34 H 1.08997 * 109.46956 * 145.31672 * 20 19 18 35 35 H 1.08994 * 109.47201 * 300.00012 * 21 20 19 36 36 H 1.09002 * 109.47031 * 60.00032 * 21 20 19 37 37 H 0.96705 * 113.99852 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3125 6 1 4.0790 -0.0861 0.5390 7 6 4.2310 -1.1980 2.3548 8 7 3.5771 -1.8423 3.2965 9 14 6.0933 -1.0727 2.4293 10 1 6.4912 0.3566 2.4913 11 1 6.5888 -1.7769 3.6393 12 1 6.6803 -1.6978 1.2170 13 8 2.0063 -0.6736 -1.1668 14 6 2.1115 0.0625 -2.3044 15 6 1.6577 1.3734 -2.3284 16 6 1.7662 2.1196 -3.4856 17 6 2.3262 1.5609 -4.6200 18 6 2.7782 0.2547 -4.5990 19 6 2.6775 -0.4940 -3.4421 20 6 3.1765 -1.9158 -3.4179 21 6 2.0155 -2.8687 -3.7091 22 8 2.4889 -4.2169 -3.6867 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7517 -1.7715 1.2055 27 1 1.6055 -0.2617 2.1369 28 1 4.0618 -2.2522 4.0299 29 1 1.2198 1.8101 -1.4429 30 1 1.4127 3.1399 -3.5049 31 1 2.4098 2.1459 -5.5240 32 1 3.2148 -0.1795 -5.4862 33 1 3.9495 -2.0424 -4.1759 34 1 3.5916 -2.1384 -2.4349 35 1 1.2426 -2.7420 -2.9512 36 1 1.6005 -2.6460 -4.6921 37 1 1.8048 -4.8769 -3.8642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:54 Heat of formation + Delta-G solvation = -104.147632 kcal Electronic energy + Delta-G solvation = -18469.578802 eV Core-core repulsion = 15596.633951 eV Total energy + Delta-G solvation = -2872.944851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26505 -38.74114 -37.78081 -35.47016 -34.22206 -33.17315 -30.85722 -29.38119 -29.13535 -25.37025 -24.44108 -23.93125 -21.96143 -21.37222 -19.00833 -18.54924 -18.33129 -17.14133 -16.58714 -16.35491 -16.07752 -15.74653 -15.46673 -15.00278 -14.71538 -14.27295 -13.96229 -13.76806 -13.59861 -13.38415 -13.13525 -12.91305 -12.74905 -12.66821 -12.38123 -12.22400 -12.16133 -11.87356 -11.66121 -11.28145 -11.07897 -10.88911 -10.60817 -9.74237 -8.94691 -8.23620 -6.32397 0.41170 0.59694 1.34880 1.38343 1.45936 2.37663 2.49168 2.85604 3.11042 3.37846 3.89027 3.97622 4.07930 4.19990 4.22033 4.29437 4.31451 4.40104 4.48177 4.55876 4.61625 4.72826 4.83865 4.95568 5.00168 5.05858 5.15698 5.25696 5.35472 5.45425 5.54418 5.61853 5.65510 5.73789 6.02807 6.16877 6.72476 6.79662 6.88735 7.34947 8.87978 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.007005 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.634730 B = 3996.224886 C = 4434.971812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.030 3.970 5 C -0.531 4.531 6 H 0.048 0.952 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.275 1.275 13 O -0.316 6.316 14 C 0.117 3.883 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.162 4.162 18 C -0.077 4.077 19 C -0.142 4.142 20 C -0.069 4.069 21 C 0.092 3.908 22 O -0.594 6.594 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.071 0.929 26 H -0.004 1.004 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.130 0.870 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 5.150 -16.862 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.569 4.569 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.201 1.201 13 O -0.230 6.230 14 C 0.070 3.930 15 C -0.244 4.244 16 C -0.100 4.100 17 C -0.180 4.180 18 C -0.094 4.094 19 C -0.142 4.142 20 C -0.107 4.107 21 C 0.014 3.986 22 O -0.402 6.402 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.169 0.831 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.996 5.142 -16.511 18.001 hybrid contribution 0.283 -0.382 0.763 0.899 sum -4.714 4.760 -15.749 17.114 Atomic orbital electron populations 1.22292 0.94130 1.02679 1.03166 1.22549 0.93944 0.95959 0.83697 0.91880 1.19092 0.95429 0.94973 0.91180 1.21405 0.93293 1.34362 1.07851 0.93359 1.25834 1.03377 0.94792 0.95295 1.70053 1.37539 1.36601 1.12806 0.85632 0.79870 0.78820 0.77584 1.18949 1.20240 1.20055 1.86205 1.80845 1.38976 1.16971 1.19425 0.95118 0.91412 0.86996 1.21513 1.07670 0.94030 1.01219 1.21293 0.96780 1.00185 0.91699 1.21356 1.01635 0.95445 0.99545 1.21167 0.97780 0.94281 0.96216 1.19232 1.05002 0.96978 0.93034 1.20189 0.98074 0.90303 1.02097 1.22030 0.95251 0.81302 0.99981 1.86430 1.41618 1.16904 1.95270 0.92650 0.90119 0.90964 0.98562 0.95712 0.92647 0.85223 0.83276 0.82761 0.83070 0.89519 0.93720 0.94990 0.91260 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.60 9.17 71.98 0.66 -4.94 16 2 C 0.09 4.03 2.17 30.59 0.07 4.10 16 3 H 0.06 2.63 6.31 -2.39 -0.02 2.61 16 4 C 0.03 1.63 4.68 29.85 0.14 1.76 16 5 C -0.53 -31.41 8.88 25.60 0.23 -31.18 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 9 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 10 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 O -0.32 -13.95 8.69 -92.43 -0.80 -14.75 16 14 C 0.12 4.28 6.57 22.51 0.15 4.42 16 15 C -0.23 -6.98 8.24 22.37 0.18 -6.79 16 16 C -0.08 -1.94 10.04 22.26 0.22 -1.72 16 17 C -0.16 -3.45 10.04 22.28 0.22 -3.23 16 18 C -0.08 -1.86 9.68 22.25 0.22 -1.65 16 19 C -0.14 -4.55 5.15 -19.77 -0.10 -4.66 16 20 C -0.07 -2.30 5.44 29.85 0.16 -2.14 16 21 C 0.09 2.67 7.03 71.98 0.51 3.18 16 22 O -0.59 -17.27 13.66 -148.98 -2.03 -19.31 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.07 2.09 6.91 -2.39 -0.02 2.07 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.13 3.89 5.43 -2.91 -0.02 3.87 16 30 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.09 2.50 8.05 -2.39 -0.02 2.49 16 34 H 0.04 1.87 7.69 -2.39 -0.02 1.86 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.40 7.23 9.12 -74.05 -0.68 6.56 16 Total: -1.00 -71.83 311.64 2.97 -68.86 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.38 Total: 16.20 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.12 Total: -42.08 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.28 Total: -57.17 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -2.84 Total: -34.06 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -71.83 2.97 -68.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.284 kcal (2) G-P(sol) polarization free energy of solvation -71.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds