Wall clock time and date at job start Mon Mar 30 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99744 * 2 1 4 4 C 1.50706 * 109.46858 * 179.97438 * 3 2 1 5 5 C 1.38282 * 119.97108 * 269.97405 * 4 3 2 6 6 C 1.38241 * 120.11423 * 180.02562 * 5 4 3 7 7 C 1.38172 * 120.05398 * 0.02562 * 6 5 4 8 8 C 1.38713 * 119.94072 * 359.97438 * 7 6 5 9 9 O 1.35898 * 120.04989 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00531 * 5.48382 * 9 8 7 11 11 H 1.09003 * 109.47180 * 35.17756 * 10 9 8 12 12 C 1.52997 * 109.47053 * 275.18152 * 10 9 8 13 13 C 1.53005 * 109.47294 * 155.17711 * 10 9 8 14 14 C 1.50702 * 109.47015 * 295.00285 * 13 10 9 15 15 H 1.08001 * 120.00216 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99826 * 180.02562 * 14 13 10 17 17 N 1.31523 * 119.99993 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00176 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47031 * 89.99639 * 18 16 14 20 20 H 1.48493 * 109.47090 * 209.99768 * 18 16 14 21 21 H 1.48501 * 109.46825 * 330.00089 * 18 16 14 22 22 C 1.38117 * 119.97133 * 89.99537 * 4 3 2 23 23 H 1.08999 * 109.46984 * 60.00733 * 1 2 3 24 24 H 1.09007 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47282 * 300.00601 * 1 2 3 26 26 H 1.08997 * 109.47272 * 59.99558 * 3 2 1 27 27 H 1.09008 * 109.46936 * 299.99287 * 3 2 1 28 28 H 1.08005 * 119.94399 * 0.02562 * 5 4 3 29 29 H 1.07998 * 119.97642 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.02723 * 180.27815 * 7 6 5 31 31 H 1.09004 * 109.46889 * 299.99287 * 12 10 9 32 32 H 1.08996 * 109.47155 * 59.99784 * 12 10 9 33 33 H 1.09001 * 109.47117 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.46856 * 55.00285 * 13 10 9 35 35 H 1.08999 * 109.46639 * 175.00223 * 13 10 9 36 36 H 0.96999 * 119.99924 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.03229 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2008 1.1327 1.1988 6 6 5.5789 1.0240 1.2029 7 6 6.2722 0.9695 0.0089 8 6 5.5842 1.0233 -1.1943 9 8 6.2638 0.9692 -2.3699 10 6 7.6717 0.7363 -2.2953 11 1 7.8848 0.0610 -1.4666 12 6 8.3972 2.0644 -2.0704 13 6 8.1545 0.1064 -3.6035 14 6 7.5326 -1.2569 -3.7641 15 1 6.8607 -1.6364 -3.0085 16 6 7.8224 -2.0202 -4.8751 17 7 8.6411 -1.5582 -5.7950 18 14 7.0523 -3.7104 -5.0740 19 1 5.7646 -3.5849 -5.8030 20 1 7.9728 -4.5864 -5.8422 21 1 6.8071 -4.3032 -3.7347 22 6 4.2009 1.1317 -1.1955 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.6607 1.1756 2.1332 29 1 6.1142 0.9826 2.1400 30 1 7.3485 0.8801 0.0126 31 1 8.1841 2.7396 -2.8992 32 1 8.0533 2.5130 -1.1385 33 1 9.4711 1.8866 -2.0131 34 1 7.8625 0.7399 -4.4411 35 1 9.2400 0.0104 -3.5815 36 1 8.8446 -2.0950 -6.5769 37 1 3.6630 1.1745 -2.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:27 Heat of formation + Delta-G solvation = -89.864790 kcal Electronic energy + Delta-G solvation = -17927.610776 eV Core-core repulsion = 15055.285275 eV Total energy + Delta-G solvation = -2872.325501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19311 -39.33071 -38.04959 -35.47392 -33.50827 -32.81237 -30.68039 -29.43661 -28.12199 -26.26011 -25.35674 -23.40066 -23.28673 -21.07048 -18.99849 -18.53140 -17.35700 -17.21476 -16.98876 -16.54643 -16.37296 -15.93542 -15.90473 -14.89389 -14.70739 -14.37345 -13.95920 -13.71742 -13.60320 -13.31399 -13.17590 -13.02439 -12.73415 -12.69456 -12.40398 -12.37703 -12.19593 -11.89754 -11.64512 -11.29325 -11.07178 -10.64378 -10.60924 -9.86932 -9.03840 -8.23418 -6.32346 0.28056 0.55255 1.35899 1.37542 1.48486 2.38245 2.39902 2.69235 3.10915 3.24243 3.88441 3.91093 4.03272 4.12975 4.21642 4.25555 4.39348 4.42407 4.44721 4.54822 4.56954 4.60164 4.75962 4.85072 4.87419 4.99031 5.09847 5.17102 5.34686 5.40533 5.49639 5.52666 5.61137 5.74238 5.92992 6.17136 6.22974 6.70297 6.79557 7.35192 8.88308 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018347 B = 0.005813 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.742780 B = 4815.532065 C = 5922.657794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.416 6.416 3 C 0.105 3.895 4 C -0.062 4.062 5 C -0.146 4.146 6 C -0.079 4.079 7 C -0.217 4.217 8 C 0.113 3.887 9 O -0.324 6.324 10 C 0.093 3.907 11 H 0.065 0.935 12 C -0.166 4.166 13 C 0.029 3.971 14 C -0.533 4.533 15 H 0.047 0.953 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.274 1.274 21 H -0.268 1.268 22 C -0.162 4.162 23 H 0.048 0.952 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.135 0.865 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.082 0.918 34 H -0.002 1.002 35 H 0.027 0.973 36 H 0.265 0.735 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 7.244 15.661 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.029 3.971 4 C -0.062 4.062 5 C -0.164 4.164 6 C -0.097 4.097 7 C -0.236 4.236 8 C 0.067 3.933 9 O -0.238 6.238 10 C 0.038 3.962 11 H 0.083 0.917 12 C -0.223 4.223 13 C -0.008 4.008 14 C -0.571 4.571 15 H 0.066 0.934 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.199 1.199 21 H -0.192 1.192 22 C -0.181 4.181 23 H 0.067 0.933 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.169 0.831 29 H 0.174 0.826 30 H 0.153 0.847 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.017 0.983 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.555 7.060 15.291 20.425 hybrid contribution -0.098 -0.706 -0.764 1.045 sum -11.653 6.354 14.527 19.677 Atomic orbital electron populations 1.22957 0.79179 1.03776 1.01233 1.87959 1.21719 1.28282 1.95656 1.21418 0.88166 0.84989 1.02484 1.19598 0.95170 0.99133 0.92336 1.21216 0.94322 1.03041 0.97819 1.21281 0.94389 0.96324 0.97704 1.21585 1.01217 1.08415 0.92351 1.19477 0.92397 0.95518 0.85915 1.86179 1.23283 1.85723 1.28601 1.22595 0.77153 0.96626 0.99838 0.91738 1.22304 1.01327 0.96382 1.02318 1.19120 0.95731 0.94509 0.91479 1.21445 1.27275 1.02200 1.06142 0.93442 1.25828 0.95624 1.02310 0.95461 1.70059 1.36662 1.39364 1.10880 0.85557 0.78375 0.79386 0.78436 1.20200 1.19943 1.19221 1.20446 0.91153 1.07291 0.99182 0.93287 0.88974 0.92073 0.89450 0.91800 0.83064 0.82572 0.84708 0.92546 0.90920 0.89914 0.98345 0.95475 0.92605 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.67 10.69 -148.98 -1.59 -12.26 16 3 C 0.11 2.33 6.06 71.24 0.43 2.76 16 4 C -0.06 -1.75 5.51 -19.88 -0.11 -1.86 16 5 C -0.15 -3.55 9.70 22.28 0.22 -3.33 16 6 C -0.08 -2.00 10.04 22.25 0.22 -1.77 16 7 C -0.22 -6.95 8.24 22.37 0.18 -6.76 16 8 C 0.11 4.35 6.60 22.51 0.15 4.49 16 9 O -0.32 -14.77 9.55 -92.40 -0.88 -15.65 16 10 C 0.09 4.05 2.17 30.60 0.07 4.12 16 11 H 0.06 2.71 6.32 -2.39 -0.02 2.70 16 12 C -0.17 -5.66 9.17 71.98 0.66 -5.00 16 13 C 0.03 1.54 4.68 29.85 0.14 1.68 16 14 C -0.53 -31.64 8.88 25.60 0.23 -31.41 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.34 5.46 84.65 0.46 0.80 16 17 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 18 Si 0.96 46.24 29.54 68.60 2.03 48.26 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 C -0.16 -5.69 9.64 22.36 0.22 -5.48 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 27 H 0.06 1.31 8.09 -2.38 -0.02 1.29 16 28 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.14 4.09 5.43 -2.91 -0.02 4.07 16 31 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.07 2.12 6.90 -2.39 -0.02 2.10 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -70.87 313.57 4.99 -65.89 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.04 Total: 10.79 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.11 Total: -40.11 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.28 Total: -56.92 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -2.47 Total: -27.91 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -70.87 4.99 -65.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.976 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds