Wall clock time and date at job start Mon Mar 30 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47002 * 240.00064 * 2 1 3 5 5 O 1.42898 * 109.47247 * 60.00033 * 4 2 1 6 6 C 1.53005 * 109.47131 * 120.00018 * 2 1 3 7 7 O 1.42901 * 109.46850 * 299.99659 * 6 2 1 8 8 C 1.35671 * 116.99781 * 179.97438 * 7 6 2 9 9 C 1.39316 * 119.81769 * 0.25218 * 8 7 6 10 10 C 1.36441 * 120.18282 * 180.25688 * 9 8 7 11 11 C 1.40835 * 119.81132 * 359.46844 * 10 9 8 12 12 C 1.41216 * 120.17483 * 180.29815 * 11 10 9 13 13 H 1.07997 * 120.00438 * 24.54125 * 12 11 10 14 14 C 1.39897 * 119.99576 * 204.53835 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.93189 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.93556 * 14 12 11 17 17 H 1.48504 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47431 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.46661 * 240.00011 * 16 14 12 20 20 C 1.40823 * 119.64107 * 0.28458 * 11 10 9 21 21 C 1.36436 * 119.81465 * 359.97438 * 20 11 10 22 22 H 1.09006 * 109.47029 * 300.00440 * 1 2 3 23 23 H 1.08997 * 109.47270 * 59.99749 * 1 2 3 24 24 H 1.09002 * 109.47606 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47385 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46971 * 300.00008 * 3 2 1 27 27 H 1.09001 * 109.47315 * 60.00284 * 3 2 1 28 28 H 1.09004 * 109.46896 * 180.02562 * 4 2 1 29 29 H 1.09006 * 109.46737 * 299.99703 * 4 2 1 30 30 H 0.96699 * 113.99850 * 180.02562 * 5 4 2 31 31 H 1.08997 * 109.46763 * 179.97438 * 6 2 1 32 32 H 1.08994 * 109.46860 * 59.99865 * 6 2 1 33 33 H 1.07997 * 119.91004 * 0.03109 * 9 8 7 34 34 H 1.08001 * 120.09133 * 179.74824 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09699 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.90886 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.5636 -0.0476 -2.4160 6 6 2.0400 -0.7213 1.2493 7 8 1.5637 -0.0475 2.4160 8 6 1.9278 -0.5634 3.6169 9 6 2.7354 -1.6974 3.6675 10 6 3.1018 -2.2255 4.8710 11 6 2.6703 -1.6143 6.0643 12 6 3.0501 -2.1508 7.3141 13 1 3.9471 -2.7467 7.3960 14 6 2.2644 -1.9102 8.4463 15 7 1.0271 -1.5057 8.3104 16 14 2.9812 -2.1664 10.1522 17 1 4.3891 -2.6236 10.0340 18 1 2.9373 -0.8870 10.9049 19 1 2.1868 -3.1927 10.8738 20 6 1.8584 -0.4653 6.0042 21 6 1.4966 0.0471 4.7925 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7216 -1.2490 29 1 1.6766 -1.7490 -1.2492 30 1 1.8486 -0.4514 -3.2472 31 1 3.1299 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 3.0695 -2.1619 2.7515 34 1 3.7246 -3.1070 4.9085 35 1 0.4822 -1.3392 9.0954 36 1 1.5236 0.0095 6.9146 37 1 0.8743 0.9285 4.7447 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701171042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:13 Heat of formation + Delta-G solvation = -86.247203 kcal Electronic energy + Delta-G solvation = -17991.505966 eV Core-core repulsion = 15119.337336 eV Total energy + Delta-G solvation = -2872.168631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.20747 -37.82984 -36.34131 -34.44925 -33.17684 -29.78154 -28.98414 -27.07697 -26.79155 -25.82107 -24.47762 -21.10143 -20.59658 -18.78888 -17.56795 -17.28631 -16.92548 -15.47247 -15.22521 -14.62095 -14.57208 -14.37763 -13.91879 -13.37828 -12.87536 -12.68521 -12.63701 -12.20279 -12.08700 -11.76730 -11.68337 -11.32810 -11.15959 -10.94679 -10.81585 -10.63614 -10.56566 -10.33371 -10.09070 -9.90701 -9.78446 -9.31819 -9.00563 -7.62539 -7.00869 -6.70914 -4.24021 2.78364 2.96833 3.09602 3.14767 3.21750 3.72622 3.96369 4.62021 4.65884 4.79178 4.87443 5.09453 5.39406 5.41310 5.48590 5.68025 5.74487 5.84679 5.99211 6.07899 6.09145 6.12823 6.24160 6.28094 6.48418 6.53269 6.74745 6.99725 7.13009 7.20439 7.45660 7.50036 7.57541 7.81647 8.02176 8.22118 8.47930 8.67567 8.91515 9.00697 10.23385 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.062139 B = 0.004029 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.495730 B = 6948.705491 C = 7143.347249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.133 4.133 4 C 0.088 3.912 5 O -0.567 6.567 6 C 0.080 3.920 7 O -0.320 6.320 8 C -0.006 4.006 9 C -0.168 4.168 10 C -0.198 4.198 11 C 0.087 3.913 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.799 5.799 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.276 1.276 20 C -0.133 4.133 21 C -0.120 4.120 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.376 0.624 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.279 0.721 36 H 0.125 0.875 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 1.476 -12.988 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C -0.190 4.190 4 C 0.010 3.990 5 O -0.371 6.371 6 C 0.003 3.997 7 O -0.236 6.236 8 C -0.049 4.049 9 C -0.187 4.187 10 C -0.218 4.218 11 C 0.085 3.915 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.425 5.425 16 Si 0.731 3.269 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.153 4.153 21 C -0.139 4.139 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.503 2.078 -12.417 12.599 hybrid contribution 0.678 -0.895 0.380 1.186 sum 1.181 1.182 -12.037 12.152 Atomic orbital electron populations 1.21706 0.93391 1.01651 1.02263 1.20533 0.97420 0.96724 0.91537 1.21704 1.00234 0.94779 1.02260 1.22076 0.97111 0.94558 0.85259 1.86464 1.77539 1.57301 1.15833 1.22307 0.97720 0.95182 0.84457 1.85793 1.72457 1.53485 1.11818 1.18596 1.04489 0.98116 0.83715 1.20410 1.02881 0.97898 0.97517 1.20569 1.07815 1.01327 0.92079 1.17593 0.91005 0.90592 0.92313 1.19490 1.08602 1.29254 0.92061 0.90556 1.25873 0.93959 0.92917 1.01422 1.69840 1.06152 1.34382 1.32153 0.86298 0.80388 0.78708 0.81519 1.18497 1.19751 1.20101 1.20971 1.01977 0.96734 0.95581 1.19828 1.03042 1.00502 0.90545 0.91622 0.92256 0.93223 0.93255 0.92261 0.91631 0.93540 0.93524 0.77719 0.93234 0.93213 0.88918 0.88805 0.91000 0.85705 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.18 37.16 0.30 -1.53 16 2 C -0.06 -0.84 0.69 -154.51 -0.11 -0.95 16 3 C -0.13 -1.81 8.18 37.16 0.30 -1.51 16 4 C 0.09 0.95 5.91 37.16 0.22 1.17 16 5 O -0.57 -5.78 12.31 -35.23 -0.43 -6.22 16 6 C 0.08 1.29 3.60 37.16 0.13 1.42 16 7 O -0.32 -6.49 8.77 -18.71 -0.16 -6.66 16 8 C -0.01 -0.14 6.71 -38.78 -0.26 -0.40 16 9 C -0.17 -3.84 8.96 -39.83 -0.36 -4.20 16 10 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 11 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 12 C -0.46 -12.40 9.04 -37.83 -0.34 -12.74 16 13 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 14 C 0.07 1.89 5.13 -17.34 -0.09 1.81 16 15 N -0.80 -20.81 10.96 55.55 0.61 -20.20 16 16 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.13 -3.51 8.64 -39.25 -0.34 -3.84 16 21 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 22 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 23 H 0.06 0.77 7.68 -51.93 -0.40 0.38 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 27 H 0.06 0.98 7.68 -51.93 -0.40 0.59 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.38 2.03 9.12 45.56 0.42 2.44 16 31 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 32 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 33 H 0.09 1.84 6.27 -52.49 -0.33 1.51 16 34 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.13 3.36 6.16 -52.49 -0.32 3.03 16 37 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -29.14 305.71 -7.03 -36.17 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.71 Total: 6.21 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -1.91 Total: -27.65 kcal Atomic # 7 Polarization: -20.81 SS G_CDS: 0.61 Total: -20.20 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.60 Total: -12.87 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.14 -7.03 -36.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701171042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.081 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds