Wall clock time and date at job start Mon Mar 30 2020 06:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47002 * 240.00064 * 2 1 3 5 5 O 1.42898 * 109.47247 * 60.00033 * 4 2 1 6 6 C 1.53005 * 109.47131 * 120.00018 * 2 1 3 7 7 O 1.42901 * 109.46850 * 299.99659 * 6 2 1 8 8 C 1.35671 * 116.99781 * 179.97438 * 7 6 2 9 9 C 1.39316 * 119.81769 * 0.25218 * 8 7 6 10 10 C 1.36441 * 120.18282 * 180.25688 * 9 8 7 11 11 C 1.40835 * 119.81132 * 359.46844 * 10 9 8 12 12 C 1.41216 * 120.17483 * 180.29815 * 11 10 9 13 13 H 1.07997 * 120.00438 * 24.54125 * 12 11 10 14 14 C 1.39897 * 119.99576 * 204.53835 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.93189 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.93556 * 14 12 11 17 17 H 1.48504 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47431 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.46661 * 240.00011 * 16 14 12 20 20 C 1.40823 * 119.64107 * 0.28458 * 11 10 9 21 21 C 1.36436 * 119.81465 * 359.97438 * 20 11 10 22 22 H 1.09006 * 109.47029 * 300.00440 * 1 2 3 23 23 H 1.08997 * 109.47270 * 59.99749 * 1 2 3 24 24 H 1.09002 * 109.47606 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47385 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46971 * 300.00008 * 3 2 1 27 27 H 1.09001 * 109.47315 * 60.00284 * 3 2 1 28 28 H 1.09004 * 109.46896 * 180.02562 * 4 2 1 29 29 H 1.09006 * 109.46737 * 299.99703 * 4 2 1 30 30 H 0.96699 * 113.99850 * 180.02562 * 5 4 2 31 31 H 1.08997 * 109.46763 * 179.97438 * 6 2 1 32 32 H 1.08994 * 109.46860 * 59.99865 * 6 2 1 33 33 H 1.07997 * 119.91004 * 0.03109 * 9 8 7 34 34 H 1.08001 * 120.09133 * 179.74824 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09699 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.90886 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.5636 -0.0476 -2.4160 6 6 2.0400 -0.7213 1.2493 7 8 1.5637 -0.0475 2.4160 8 6 1.9278 -0.5634 3.6169 9 6 2.7354 -1.6974 3.6675 10 6 3.1018 -2.2255 4.8710 11 6 2.6703 -1.6143 6.0643 12 6 3.0501 -2.1508 7.3141 13 1 3.9471 -2.7467 7.3960 14 6 2.2644 -1.9102 8.4463 15 7 1.0271 -1.5057 8.3104 16 14 2.9812 -2.1664 10.1522 17 1 4.3891 -2.6236 10.0340 18 1 2.9373 -0.8870 10.9049 19 1 2.1868 -3.1927 10.8738 20 6 1.8584 -0.4653 6.0042 21 6 1.4966 0.0471 4.7925 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7216 -1.2490 29 1 1.6766 -1.7490 -1.2492 30 1 1.8486 -0.4514 -3.2472 31 1 3.1299 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 3.0695 -2.1619 2.7515 34 1 3.7246 -3.1070 4.9085 35 1 0.4822 -1.3392 9.0954 36 1 1.5236 0.0095 6.9146 37 1 0.8743 0.9285 4.7447 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701171042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:12 Heat of formation + Delta-G solvation = -104.090237 kcal Electronic energy + Delta-G solvation = -17992.279698 eV Core-core repulsion = 15119.337336 eV Total energy + Delta-G solvation = -2872.942363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73968 -39.13275 -37.84123 -35.65824 -34.93111 -31.67290 -30.88027 -28.17195 -28.00951 -27.12269 -26.12022 -22.92582 -22.44552 -19.97289 -19.18512 -18.69996 -18.25399 -17.04660 -16.71446 -16.15055 -15.73738 -15.67042 -15.46510 -14.79164 -14.58834 -14.05619 -13.92193 -13.82655 -13.62362 -13.38142 -12.98270 -12.81793 -12.77636 -12.56153 -12.36661 -12.00295 -11.73759 -11.69134 -11.51908 -11.47119 -11.11232 -10.86535 -10.84641 -9.55350 -8.91164 -8.58938 -6.22199 0.95509 1.03335 1.40292 1.51444 1.55544 2.23377 2.47076 2.73228 3.60834 3.69982 3.76402 3.80609 4.09731 4.28647 4.33652 4.40192 4.41343 4.53986 4.58149 4.76733 4.86924 4.89341 5.02087 5.02350 5.08297 5.17365 5.22650 5.29314 5.38443 5.43496 5.59819 5.65910 5.90284 6.06457 6.27282 6.57608 6.81937 6.95760 6.96541 7.11505 8.37619 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.062139 B = 0.004029 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.495730 B = 6948.705491 C = 7143.347249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.129 4.129 4 C 0.094 3.906 5 O -0.581 6.581 6 C 0.071 3.929 7 O -0.327 6.327 8 C 0.003 3.997 9 C -0.166 4.166 10 C -0.208 4.208 11 C 0.054 3.946 12 C -0.500 4.500 13 H 0.076 0.924 14 C 0.034 3.966 15 N -0.832 5.832 16 Si 0.982 3.018 17 H -0.258 1.258 18 H -0.265 1.265 19 H -0.267 1.267 20 C -0.152 4.152 21 C -0.134 4.134 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.399 0.601 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.287 0.713 36 H 0.109 0.891 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 0.907 -14.300 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.187 4.187 4 C 0.016 3.984 5 O -0.389 6.389 6 C -0.004 4.004 7 O -0.242 6.242 8 C -0.041 4.041 9 C -0.185 4.185 10 C -0.228 4.228 11 C 0.052 3.948 12 C -0.530 4.530 13 H 0.094 0.906 14 C -0.180 4.180 15 N -0.459 5.459 16 Si 0.803 3.197 17 H -0.182 1.182 18 H -0.190 1.190 19 H -0.192 1.192 20 C -0.172 4.172 21 C -0.152 4.152 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.249 0.751 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.204 1.504 -13.776 13.911 hybrid contribution 0.416 -0.682 0.575 0.984 sum 1.620 0.823 -13.201 13.325 Atomic orbital electron populations 1.21672 0.93810 1.01722 1.01545 1.20566 0.97095 0.96712 0.91884 1.21667 1.00618 0.94835 1.01557 1.21943 0.97797 0.94477 0.84182 1.86401 1.77862 1.57882 1.16765 1.22637 0.98476 0.95674 0.83637 1.85806 1.72505 1.53999 1.11932 1.18670 1.03259 0.97583 0.84583 1.20707 1.02038 0.97529 0.98205 1.20814 1.07943 1.01759 0.92271 1.17946 0.92056 0.91294 0.93480 1.19738 1.09297 1.30754 0.93189 0.90628 1.26735 0.93951 0.92135 1.05204 1.69893 1.07306 1.34963 1.33706 0.85162 0.79524 0.78913 0.76096 1.18163 1.18999 1.19175 1.20892 1.03184 0.97299 0.95796 1.19994 1.03381 1.01095 0.90771 0.93784 0.91497 0.92755 0.92570 0.91545 0.93723 0.92143 0.92300 0.75133 0.92190 0.92498 0.85482 0.87677 0.90237 0.87274 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.18 71.98 0.59 -2.81 16 2 C -0.06 -1.56 0.69 -52.18 -0.04 -1.59 16 3 C -0.13 -3.32 8.18 71.98 0.59 -2.73 16 4 C 0.09 1.71 5.91 71.98 0.43 2.14 16 5 O -0.58 -9.93 12.31 -148.98 -1.83 -11.76 16 6 C 0.07 2.14 3.60 71.98 0.26 2.39 16 7 O -0.33 -12.88 8.77 -89.88 -0.79 -13.67 16 8 C 0.00 0.14 6.71 22.79 0.15 0.29 16 9 C -0.17 -7.36 8.96 22.11 0.20 -7.16 16 10 C -0.21 -10.30 9.74 22.49 0.22 -10.08 16 11 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16 12 C -0.50 -27.33 9.04 23.40 0.21 -27.12 16 13 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 14 C 0.03 1.72 5.13 85.24 0.44 2.15 16 15 N -0.83 -44.30 10.96 21.82 0.24 -44.06 16 16 Si 0.98 38.67 29.60 68.60 2.03 40.70 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 C -0.15 -8.26 8.64 22.48 0.19 -8.07 16 21 C -0.13 -6.61 9.92 22.11 0.22 -6.40 16 22 H 0.04 1.32 7.68 -2.38 -0.02 1.30 16 23 H 0.07 1.63 7.68 -2.39 -0.02 1.61 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.59 7.68 -2.38 -0.02 1.57 16 27 H 0.04 1.31 7.68 -2.39 -0.02 1.29 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.40 2.88 9.12 -74.06 -0.68 2.20 16 31 H 0.06 1.69 7.64 -2.39 -0.02 1.67 16 32 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 33 H 0.13 4.66 6.27 -2.91 -0.02 4.64 16 34 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 36 H 0.11 6.15 6.16 -2.91 -0.02 6.13 16 37 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -62.96 305.71 3.37 -59.59 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.38 Total: 25.30 kcal Atomic # 6 Polarization: -59.45 SS G_CDS: 3.34 Total: -56.11 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.24 Total: -44.06 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -2.62 Total: -25.43 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -62.96 3.37 -59.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701171042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.497 kcal (2) G-P(sol) polarization free energy of solvation -62.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds