Wall clock time and date at job start Mon Mar 30 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47336 * 2 1 4 4 C 1.38165 * 120.02630 * 264.99780 * 3 2 1 5 5 C 1.38245 * 120.05645 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.10982 * 359.97438 * 5 4 3 7 7 C 1.38126 * 120.05768 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.03077 * 180.02562 * 7 6 5 9 9 O 1.42906 * 109.46882 * 0.02562 * 8 7 6 10 10 C 1.38714 * 120.03037 * 84.97800 * 3 2 1 11 11 O 1.35901 * 120.05102 * 0.04686 * 10 3 2 12 12 C 1.42901 * 117.00515 * 89.99855 * 11 10 3 13 13 C 1.52997 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47131 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00116 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00027 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99762 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47565 * 60.00390 * 18 16 14 20 20 H 1.48501 * 109.46888 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47333 * 299.99678 * 18 16 14 22 22 H 1.09001 * 109.46748 * 59.99957 * 1 2 3 23 23 H 1.08991 * 109.47378 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46473 * 300.00534 * 1 2 3 25 25 H 1.08999 * 109.47174 * 239.99727 * 2 1 3 26 26 H 1.09001 * 109.46748 * 120.00042 * 2 1 3 27 27 H 1.07997 * 119.97398 * 359.97438 * 4 3 2 28 28 H 1.07995 * 119.94685 * 179.70646 * 5 4 3 29 29 H 1.08005 * 119.97140 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46669 * 119.99785 * 8 7 6 31 31 H 1.08991 * 109.47549 * 239.99961 * 8 7 6 32 32 H 0.96703 * 113.99564 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.46672 * 300.00319 * 12 11 10 34 34 H 1.09006 * 109.46674 * 59.99514 * 12 11 10 35 35 H 1.09001 * 109.47143 * 299.99978 * 13 12 11 36 36 H 1.08999 * 109.46691 * 60.00152 * 13 12 11 37 37 H 0.96999 * 120.00329 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3612 2.0378 -1.1917 5 6 2.8227 3.3410 -1.1923 6 6 2.9558 4.0304 -0.0010 7 6 2.6285 3.4180 1.1931 8 6 2.7733 4.1700 2.4909 9 8 3.2622 5.4866 2.2265 10 6 2.1647 2.1103 1.1963 11 8 1.8425 1.5053 2.3698 12 6 2.8847 0.7944 3.0410 13 6 2.3367 0.1862 4.3335 14 6 3.4360 -0.5629 5.0416 15 1 4.4264 -0.6017 4.6124 16 6 3.1773 -1.1997 6.2368 17 7 1.9710 -1.1537 6.7587 18 14 4.5398 -2.1288 7.1141 19 1 5.6473 -1.1942 7.4381 20 1 4.0077 -2.7201 8.3681 21 1 5.0472 -3.2114 6.2335 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2585 1.5014 -2.1234 28 1 3.0837 3.8200 -2.1244 29 1 3.3169 5.0483 -0.0041 30 1 1.8029 4.2352 2.9832 31 1 3.4749 3.6448 3.1389 32 1 3.3795 6.0289 3.0185 33 1 3.2572 -0.0001 2.3944 34 1 3.6977 1.4806 3.2787 35 1 1.9645 0.9811 4.9798 36 1 1.5236 -0.4998 4.0960 37 1 1.7890 -1.6014 7.5997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709291414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:08 Heat of formation + Delta-G solvation = -106.502225 kcal Electronic energy + Delta-G solvation = -18247.519836 eV Core-core repulsion = 15374.472882 eV Total energy + Delta-G solvation = -2873.046954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28191 -38.46338 -37.71752 -35.44158 -34.95349 -32.56544 -31.59235 -29.86515 -27.26446 -26.60517 -24.75568 -23.07523 -22.59080 -21.43557 -19.12709 -18.48024 -17.98935 -17.01100 -16.70430 -16.58659 -16.17406 -15.67632 -15.38899 -14.99330 -14.94321 -14.49369 -14.31937 -14.00260 -13.41015 -13.29661 -13.11145 -12.83332 -12.61964 -12.56102 -12.52672 -12.14993 -11.90701 -11.80228 -11.49037 -11.43485 -11.29983 -10.77355 -10.54491 -9.56963 -9.43960 -8.25903 -6.39658 0.22331 0.36289 1.40181 1.43582 1.51770 2.33770 2.53902 3.04553 3.08003 3.16420 3.82352 3.93860 4.05294 4.20860 4.29941 4.32068 4.39448 4.43986 4.49666 4.52570 4.59405 4.64675 4.75623 4.88026 4.99775 5.08613 5.20281 5.32226 5.37850 5.49484 5.50382 5.54288 5.64780 5.69797 5.91883 6.09894 6.67644 6.75162 6.79481 7.30397 8.86515 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.005681 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.593666 B = 4927.702873 C = 5725.611455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 C -0.112 4.112 4 C -0.105 4.105 5 C -0.122 4.122 6 C -0.099 4.099 7 C -0.130 4.130 8 C 0.127 3.873 9 O -0.575 6.575 10 C 0.077 3.923 11 O -0.352 6.352 12 C 0.096 3.904 13 C 0.035 3.965 14 C -0.548 4.548 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.401 0.599 33 H 0.044 0.956 34 H 0.042 0.958 35 H -0.002 1.002 36 H -0.002 1.002 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 8.428 -15.186 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 C -0.112 4.112 4 C -0.123 4.123 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.130 4.130 8 C 0.049 3.951 9 O -0.384 6.384 10 C 0.034 3.966 11 O -0.270 6.270 12 C 0.023 3.977 13 C -0.002 4.002 14 C -0.585 4.585 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.190 1.190 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.173 0.827 28 H 0.176 0.824 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.252 0.748 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.546 8.152 -15.543 17.619 hybrid contribution 0.441 -0.313 1.601 1.690 sum 1.987 7.839 -13.942 16.118 Atomic orbital electron populations 1.21643 0.94102 1.02149 1.01535 1.20474 0.96944 0.91771 1.02731 1.20417 1.00639 0.97364 0.92785 1.21291 0.98380 0.95404 0.97200 1.21530 0.99255 0.94518 0.98706 1.21048 0.98829 1.00808 0.90983 1.20244 1.01717 0.94313 0.96736 1.20565 0.98083 0.83132 0.93297 1.86313 1.88592 1.24824 1.38653 1.18705 1.00425 0.91286 0.86186 1.86038 1.37677 1.69336 1.33970 1.22682 0.88550 0.93226 0.93286 1.18889 0.96200 0.94566 0.90568 1.21364 0.96803 1.33520 1.06846 0.91689 1.25976 0.98300 0.97102 0.97937 1.70104 1.22368 1.44348 1.20010 0.85401 0.78611 0.78825 0.77632 1.18939 1.20604 1.18965 0.91226 0.91477 0.94763 0.88680 0.93219 0.82665 0.82407 0.84135 0.92515 0.93208 0.74825 0.93752 0.94008 0.98388 0.98382 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.90 71.98 0.71 -2.98 16 2 C -0.08 -2.35 5.79 29.85 0.17 -2.17 16 3 C -0.11 -3.38 5.15 -19.77 -0.10 -3.48 16 4 C -0.10 -2.45 9.68 22.25 0.22 -2.24 16 5 C -0.12 -2.71 10.04 22.28 0.22 -2.49 16 6 C -0.10 -2.67 9.37 22.26 0.21 -2.46 16 7 C -0.13 -4.23 5.89 -19.77 -0.12 -4.35 16 8 C 0.13 3.90 6.91 71.23 0.49 4.39 16 9 O -0.58 -14.31 12.14 -148.98 -1.81 -16.12 16 10 C 0.08 2.78 5.67 22.51 0.13 2.91 16 11 O -0.35 -14.98 8.76 -92.44 -0.81 -15.79 16 12 C 0.10 4.34 5.67 71.98 0.41 4.75 16 13 C 0.03 1.92 5.34 29.85 0.16 2.08 16 14 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 15 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.01 0.32 5.46 84.65 0.46 0.78 16 17 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 18 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 2.12 8.05 -2.39 -0.02 2.10 16 26 H 0.05 1.71 6.43 -2.39 -0.02 1.70 16 27 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.14 3.48 7.00 -2.91 -0.02 3.46 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.63 7.31 -2.39 -0.02 1.62 16 32 H 0.40 6.14 9.12 -74.06 -0.68 5.47 16 33 H 0.04 1.94 7.18 -2.39 -0.02 1.93 16 34 H 0.04 1.82 7.31 -2.38 -0.02 1.81 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -68.45 312.44 3.27 -65.18 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.38 Total: 13.58 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 3.20 Total: -36.27 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.24 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -2.62 Total: -31.91 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.45 3.27 -65.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709291414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.326 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds