Wall clock time and date at job start Mon Mar 30 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47012 * 2 1 4 4 C 1.35994 * 117.00014 * 179.97438 * 3 2 1 5 5 C 1.38572 * 120.07054 * 359.97438 * 4 3 2 6 6 C 1.38238 * 119.99393 * 180.02562 * 5 4 3 7 7 C 1.38248 * 120.15191 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.14622 * 0.02562 * 7 6 5 9 9 C 1.38569 * 119.99647 * 359.97438 * 8 7 6 10 10 O 1.35996 * 120.07018 * 179.97438 * 9 8 7 11 11 C 1.42897 * 116.99903 * 5.48086 * 10 9 8 12 12 H 1.08997 * 109.47546 * 35.06446 * 11 10 9 13 13 C 1.52995 * 109.47407 * 275.05774 * 11 10 9 14 14 C 1.53002 * 109.46925 * 155.05810 * 11 10 9 15 15 C 1.50698 * 109.47267 * 295.00031 * 14 11 10 16 16 H 1.07997 * 120.00278 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00000 * 179.97438 * 15 14 11 18 18 N 1.31507 * 120.00241 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99815 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46721 * 90.00377 * 19 17 15 21 21 H 1.48494 * 109.47258 * 210.00234 * 19 17 15 22 22 H 1.48496 * 109.47065 * 330.00675 * 19 17 15 23 23 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46994 * 300.00333 * 1 2 3 25 25 H 1.09003 * 109.46923 * 60.00537 * 1 2 3 26 26 H 1.08999 * 109.47241 * 240.00149 * 2 1 3 27 27 H 1.09003 * 109.46923 * 119.99463 * 2 1 3 28 28 H 1.07997 * 120.00030 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.92425 * 180.27673 * 6 5 4 30 30 H 1.07996 * 119.92833 * 180.02562 * 7 6 5 31 31 H 1.07998 * 120.00098 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47091 * 60.00528 * 13 11 10 33 33 H 1.09001 * 109.47170 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.47348 * 300.00070 * 13 11 10 35 35 H 1.09004 * 109.47301 * 55.00061 * 14 11 10 36 36 H 1.09001 * 109.47337 * 175.00233 * 14 11 10 37 37 H 0.96996 * 120.00206 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.2000 0.4277 0.0016 6 6 5.5703 0.6107 0.0027 7 6 6.1003 1.8875 0.0022 8 6 5.2624 2.9871 0.0011 9 6 3.8880 2.8107 0.0000 10 8 3.0623 3.8913 -0.0005 11 6 3.6757 5.1763 -0.1214 12 1 4.5443 5.1042 -0.7758 13 6 4.1170 5.6629 1.2603 14 6 2.6715 6.1668 -0.7143 15 6 2.3302 5.7538 -2.1228 16 1 2.7844 4.8731 -2.5524 17 6 1.4381 6.5002 -2.8632 18 7 0.8855 7.5729 -2.3403 19 14 1.0156 5.9886 -4.6094 20 1 -0.1523 5.0716 -4.5876 21 1 0.6841 7.1933 -5.4117 22 1 2.1791 5.2939 -5.2169 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.7885 -0.5708 0.0016 29 1 6.2282 -0.2458 -0.0010 30 1 7.1713 2.0263 0.0026 31 1 5.6790 3.9834 0.0003 32 1 4.8323 4.9573 1.6826 33 1 4.5844 6.6433 1.1680 34 1 3.2482 5.7352 1.9147 35 1 1.7658 6.1729 -0.1079 36 1 3.1088 7.1653 -0.7244 37 1 0.2576 8.0978 -2.8610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709962242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:11 Heat of formation + Delta-G solvation = -82.609359 kcal Electronic energy + Delta-G solvation = -18415.945119 eV Core-core repulsion = 15543.934237 eV Total energy + Delta-G solvation = -2872.010882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45610 -39.69019 -37.87451 -35.45280 -33.51840 -32.57655 -31.19845 -29.85686 -29.37463 -25.38856 -25.05858 -23.30647 -22.98551 -21.29391 -19.66045 -18.55364 -18.21103 -17.18660 -17.04752 -16.51383 -15.99618 -15.72577 -15.60848 -15.12506 -14.44322 -14.17591 -13.97647 -13.72103 -13.44138 -13.40898 -13.34453 -12.99832 -12.75149 -12.69552 -12.63063 -12.40569 -12.12518 -11.85572 -11.69492 -11.61279 -11.30285 -11.07022 -10.60789 -9.61672 -8.66667 -8.22810 -6.31568 0.38559 0.56753 1.34514 1.37043 1.47607 2.36497 2.38302 2.48897 2.86001 3.11317 3.89856 3.99846 4.06458 4.07233 4.15061 4.23914 4.26278 4.35519 4.43995 4.50406 4.56543 4.70576 4.82508 4.89942 4.92795 5.01268 5.16840 5.20236 5.31203 5.36297 5.44349 5.47451 5.59551 5.74386 5.89661 6.17300 6.38386 6.78420 6.87342 7.35388 8.89159 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.007160 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.376799 B = 3909.622756 C = 4717.490488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.340 6.340 4 C 0.066 3.934 5 C -0.172 4.172 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.189 4.189 9 C 0.074 3.926 10 O -0.318 6.318 11 C 0.093 3.907 12 H 0.065 0.935 13 C -0.166 4.166 14 C 0.029 3.971 15 C -0.530 4.530 16 H 0.046 0.954 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.277 1.277 21 H -0.273 1.273 22 H -0.266 1.266 23 H 0.110 0.890 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.052 0.948 35 H -0.006 1.006 36 H 0.027 0.973 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 -16.474 5.850 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.255 6.255 4 C 0.021 3.979 5 C -0.191 4.191 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.207 4.207 9 C 0.028 3.972 10 O -0.232 6.232 11 C 0.037 3.963 12 H 0.083 0.917 13 C -0.223 4.223 14 C -0.008 4.008 15 C -0.568 4.568 16 H 0.065 0.935 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.784 3.216 20 H -0.203 1.203 21 H -0.198 1.198 22 H -0.191 1.191 23 H 0.128 0.872 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.173 0.827 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.013 0.987 36 H 0.045 0.955 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.842 -16.171 5.830 18.894 hybrid contribution -0.510 0.282 -0.852 1.033 sum 7.332 -15.889 4.978 18.193 Atomic orbital electron populations 1.21813 0.92320 1.04130 1.02504 1.23056 0.96553 0.80987 1.02308 1.86221 1.18909 1.31114 1.89272 1.18697 0.83539 0.91969 1.03726 1.21362 0.94479 0.97251 1.05977 1.21231 0.94025 0.98128 1.00670 1.21233 1.00690 0.91504 1.00006 1.21389 0.90750 1.01703 1.06895 1.19004 0.90549 0.86217 1.01417 1.86274 1.35662 1.13851 1.87451 1.22573 0.96220 0.80751 0.96754 0.91723 1.22298 1.01630 1.02441 0.95911 1.19105 0.93646 0.93267 0.94741 1.21425 1.25729 1.10204 0.99452 0.93536 1.25857 0.95783 0.94943 1.02831 1.70058 1.30575 1.17481 1.38974 0.85536 0.78700 0.78003 0.79385 1.20284 1.19838 1.19051 0.87162 0.92451 0.93222 0.91091 0.90343 0.82494 0.82104 0.82717 0.84369 0.90944 0.89840 0.92884 0.98736 0.95474 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.05 1.13 5.46 71.98 0.39 1.52 16 3 O -0.34 -12.90 9.92 -79.62 -0.79 -13.69 16 4 C 0.07 2.38 6.70 22.57 0.15 2.54 16 5 C -0.17 -4.51 9.04 22.35 0.20 -4.31 16 6 C -0.12 -2.72 10.04 22.27 0.22 -2.50 16 7 C -0.12 -2.86 10.04 22.27 0.22 -2.64 16 8 C -0.19 -6.12 8.24 22.35 0.18 -5.94 16 9 C 0.07 2.98 6.61 22.57 0.15 3.13 16 10 O -0.32 -15.36 9.34 -79.63 -0.74 -16.10 16 11 C 0.09 4.18 2.17 30.59 0.07 4.24 16 12 H 0.06 2.79 6.32 -2.39 -0.02 2.77 16 13 C -0.17 -5.91 9.17 71.98 0.66 -5.25 16 14 C 0.03 1.63 4.68 29.85 0.14 1.77 16 15 C -0.53 -32.20 8.88 25.60 0.23 -31.97 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 19 Si 0.96 46.76 29.54 68.60 2.03 48.79 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.52 7.67 -2.39 -0.02 1.51 16 27 H 0.08 1.55 7.66 -2.39 -0.02 1.54 16 28 H 0.16 3.03 6.30 -2.91 -0.02 3.01 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.14 4.25 5.43 -2.91 -0.02 4.24 16 32 H 0.07 2.22 6.91 -2.39 -0.02 2.20 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H -0.01 -0.36 8.14 -2.38 -0.02 -0.37 16 36 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.65 309.62 5.64 -69.01 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.04 Total: 11.30 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.82 Total: -41.38 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.28 Total: -57.93 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.53 Total: -29.78 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.65 5.64 -69.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.600 kcal (2) G-P(sol) polarization free energy of solvation -74.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds