Wall clock time and date at job start Mon Mar 30 2020 06:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.47403 * 2 1 4 4 C 1.35995 * 117.00329 * 180.02562 * 3 2 1 5 5 C 1.38568 * 120.06983 * 359.97438 * 4 3 2 6 6 C 1.38244 * 119.99633 * 180.02562 * 5 4 3 7 7 C 1.38244 * 120.14898 * 0.02562 * 6 5 4 8 8 C 1.38244 * 120.14934 * 359.97438 * 7 6 5 9 9 C 1.38564 * 119.99793 * 0.02562 * 8 7 6 10 10 O 1.35995 * 120.07577 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99839 * 354.58428 * 10 9 8 12 12 H 1.08998 * 109.46709 * 324.81846 * 11 10 9 13 13 C 1.52996 * 109.47003 * 84.81748 * 11 10 9 14 14 C 1.52995 * 109.47014 * 204.81596 * 11 10 9 15 15 C 1.50700 * 109.46990 * 65.00113 * 14 11 10 16 16 H 1.08000 * 120.00573 * 359.97438 * 15 14 11 17 17 C 1.37887 * 120.00022 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00136 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99798 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47369 * 90.00167 * 19 17 15 21 21 H 1.48499 * 109.47201 * 210.00197 * 19 17 15 22 22 H 1.48501 * 109.47208 * 329.99826 * 19 17 15 23 23 H 1.08997 * 109.47592 * 300.00817 * 1 2 3 24 24 H 1.09006 * 109.47122 * 60.00181 * 1 2 3 25 25 H 1.09004 * 109.47411 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47000 * 239.99395 * 2 1 3 27 27 H 1.09002 * 109.46650 * 119.99929 * 2 1 3 28 28 H 1.07999 * 119.99908 * 0.02562 * 5 4 3 29 29 H 1.08003 * 119.92490 * 179.72843 * 6 5 4 30 30 H 1.08006 * 119.92981 * 179.97438 * 7 6 5 31 31 H 1.07995 * 120.00483 * 180.02562 * 8 7 6 32 32 H 1.08995 * 109.47007 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47133 * 300.00165 * 13 11 10 34 34 H 1.09001 * 109.47568 * 59.99736 * 13 11 10 35 35 H 1.08996 * 109.47064 * 184.99890 * 14 11 10 36 36 H 1.09003 * 109.47281 * 305.00087 * 14 11 10 37 37 H 0.96998 * 119.99982 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.2000 0.4275 -0.0005 6 6 5.5703 0.6104 -0.0005 7 6 6.1004 1.8872 0.0000 8 6 5.2625 2.9868 -0.0001 9 6 3.8881 2.8106 0.0000 10 8 3.0625 3.8912 -0.0006 11 6 3.6758 5.1763 0.1190 12 1 4.5433 5.1052 0.7751 13 6 4.1198 5.6601 -1.2629 14 6 2.6709 6.1682 0.7080 15 6 2.3269 5.7580 2.1167 16 1 2.7794 4.8776 2.5486 17 6 1.4343 6.5067 2.8543 18 7 1.1345 6.1490 4.0838 19 14 0.6521 8.0298 2.1077 20 1 -0.6112 7.6531 1.4241 21 1 0.3597 9.0131 3.1814 22 1 1.5860 8.6343 1.1240 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.7884 -0.5710 -0.0005 29 1 6.2282 -0.2461 0.0039 30 1 7.1715 2.0260 0.0004 31 1 5.6791 3.9832 -0.0001 32 1 4.5880 6.6401 -1.1716 33 1 4.8358 4.9534 -1.6825 34 1 3.2523 5.7312 -1.9190 35 1 3.1083 7.1665 0.7169 36 1 1.7662 6.1733 0.0999 37 1 0.5063 6.6754 4.6026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709962247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:13 Heat of formation + Delta-G solvation = -80.173634 kcal Electronic energy + Delta-G solvation = -18422.609688 eV Core-core repulsion = 15550.704427 eV Total energy + Delta-G solvation = -2871.905261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47145 -39.71457 -37.89419 -35.40118 -33.68610 -32.63074 -31.21860 -29.94451 -29.75805 -25.26827 -24.88004 -23.24413 -22.98983 -21.27819 -19.68914 -18.94989 -18.23545 -17.20040 -17.07236 -16.40347 -15.98188 -15.74155 -15.63347 -15.13494 -14.58513 -14.29753 -14.06738 -13.87167 -13.54775 -13.50794 -13.37511 -12.99895 -12.75150 -12.69830 -12.51659 -12.23508 -11.94263 -11.78701 -11.67623 -11.62468 -11.36097 -11.24526 -10.78161 -9.63108 -8.67995 -8.29161 -6.33089 0.37204 0.55325 1.34347 1.37264 1.48217 2.34874 2.35466 2.46465 2.85052 3.06911 3.88055 3.96265 4.04968 4.05850 4.11970 4.20870 4.23488 4.33968 4.40982 4.48923 4.55064 4.69608 4.82492 4.88371 4.91655 4.94617 5.05175 5.17943 5.20738 5.29860 5.36058 5.41757 5.57617 5.61256 5.88029 6.23525 6.35996 6.70849 6.85071 7.28873 8.88604 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.006859 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.128772 B = 4081.503404 C = 4904.780785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.340 6.340 4 C 0.065 3.935 5 C -0.174 4.174 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.189 4.189 9 C 0.075 3.925 10 O -0.319 6.319 11 C 0.093 3.907 12 H 0.060 0.940 13 C -0.167 4.167 14 C -0.009 4.009 15 C -0.522 4.522 16 H 0.020 0.980 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.954 3.046 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.237 1.237 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.529 -11.148 -12.458 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.255 6.255 4 C 0.020 3.980 5 C -0.192 4.192 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.207 4.207 9 C 0.029 3.971 10 O -0.233 6.233 11 C 0.037 3.963 12 H 0.078 0.922 13 C -0.224 4.224 14 C -0.047 4.047 15 C -0.560 4.560 16 H 0.038 0.962 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.777 3.223 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.160 1.160 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.174 0.826 29 H 0.179 0.821 30 H 0.174 0.826 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.062 -10.942 -12.332 17.936 hybrid contribution -0.563 0.527 0.497 0.918 sum 6.499 -10.416 -11.835 17.052 Atomic orbital electron populations 1.21808 0.92244 1.04163 1.02486 1.23053 0.96625 0.80988 1.02240 1.86211 1.18927 1.31135 1.89259 1.18727 0.83550 0.92089 1.03677 1.21369 0.94538 0.97263 1.06036 1.21239 0.93993 0.98199 1.00666 1.21245 1.00740 0.91511 1.00022 1.21398 0.90700 1.01763 1.06856 1.18978 0.90561 0.86190 1.01400 1.86250 1.35705 1.13913 1.87475 1.22482 0.96008 0.80693 0.97101 0.92160 1.22332 1.02015 1.02739 0.95323 1.19692 0.95560 0.95211 0.94195 1.21277 1.25763 1.10528 0.98464 0.96193 1.26067 0.96728 1.01667 0.95072 1.70087 1.36190 1.41785 1.11399 0.85604 0.79479 0.78458 0.78762 1.19771 1.20581 1.15972 0.93491 0.92173 0.87115 0.90113 0.91441 0.82550 0.82075 0.82626 0.84170 0.89120 0.91188 0.92058 0.92676 0.96121 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 10.28 71.98 0.74 -2.80 16 2 C 0.05 1.19 5.46 71.98 0.39 1.59 16 3 O -0.34 -13.37 9.92 -79.63 -0.79 -14.16 16 4 C 0.06 2.43 6.70 22.57 0.15 2.58 16 5 C -0.17 -4.79 9.04 22.35 0.20 -4.59 16 6 C -0.12 -2.88 10.04 22.27 0.22 -2.65 16 7 C -0.12 -2.99 10.04 22.27 0.22 -2.76 16 8 C -0.19 -6.23 8.24 22.35 0.18 -6.05 16 9 C 0.07 3.06 6.61 22.57 0.15 3.21 16 10 O -0.32 -15.25 9.34 -79.64 -0.74 -16.00 16 11 C 0.09 3.97 2.17 30.59 0.07 4.03 16 12 H 0.06 2.56 6.32 -2.39 -0.02 2.55 16 13 C -0.17 -5.29 9.17 71.98 0.66 -4.63 16 14 C -0.01 -0.47 3.75 29.85 0.11 -0.36 16 15 C -0.52 -32.25 9.43 25.60 0.24 -32.01 16 16 H 0.02 1.39 7.99 -2.91 -0.02 1.36 16 17 C 0.00 0.04 5.47 84.66 0.46 0.51 16 18 N -0.95 -62.78 13.96 21.45 0.30 -62.48 16 19 Si 0.95 45.78 27.47 68.60 1.88 47.67 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.08 1.67 7.66 -2.38 -0.02 1.65 16 27 H 0.07 1.59 7.66 -2.39 -0.02 1.57 16 28 H 0.16 3.24 6.30 -2.91 -0.02 3.23 16 29 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.14 4.31 5.42 -2.91 -0.02 4.30 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 1.96 6.90 -2.39 -0.02 1.94 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 2.50 7.20 -2.39 -0.02 2.48 16 36 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 37 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -78.76 306.00 5.45 -73.31 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.99 Total: 15.59 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 3.81 Total: -43.93 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.30 Total: -62.48 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.53 Total: -30.16 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -78.76 5.45 -73.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.863 kcal (2) G-P(sol) polarization free energy of solvation -78.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds