Wall clock time and date at job start Mon Mar 30 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34796 * 116.99951 * 2 1 4 4 O 1.21536 * 120.00283 * 359.97438 * 3 2 1 5 5 C 1.46949 * 119.99711 * 180.02562 * 3 2 1 6 6 C 1.33083 * 120.00130 * 185.65228 * 5 3 2 7 7 C 1.50701 * 119.99828 * 5.68352 * 6 5 3 8 8 C 1.50706 * 109.47275 * 174.79392 * 7 6 5 9 9 C 1.29447 * 117.96118 * 94.99605 * 8 7 6 10 10 C 1.50070 * 124.07221 * 179.24450 * 9 8 7 11 11 C 1.53024 * 110.14717 * 17.39824 * 10 9 8 12 12 H 1.08997 * 109.64115 * 70.24152 * 11 10 9 13 13 C 1.50696 * 109.64208 * 190.66214 * 11 10 9 14 14 H 1.08004 * 119.99557 * 119.99838 * 13 11 10 15 15 C 1.37873 * 120.00181 * 300.00094 * 13 11 10 16 16 N 1.31521 * 119.99795 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99960 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47141 * 59.99978 * 17 15 13 19 19 H 1.48505 * 109.47010 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47186 * 299.99499 * 17 15 13 21 21 C 1.53393 * 108.43550 * 310.55871 * 11 10 9 22 22 C 1.50072 * 117.96493 * 275.21718 * 8 7 6 23 23 H 1.08995 * 109.46956 * 299.99967 * 1 2 3 24 24 H 1.09002 * 109.47148 * 59.99840 * 1 2 3 25 25 H 1.08994 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00510 * 5.65310 * 5 3 2 27 27 H 1.08006 * 120.00515 * 185.68161 * 6 5 3 28 28 H 1.08997 * 109.47292 * 54.78934 * 7 6 5 29 29 H 1.09004 * 109.47253 * 294.79202 * 7 6 5 30 30 H 1.08002 * 117.95970 * 359.53794 * 9 8 7 31 31 H 1.09005 * 109.35144 * 137.60327 * 10 9 8 32 32 H 1.08995 * 109.35802 * 257.18728 * 10 9 8 33 33 H 0.96995 * 119.99638 * 179.97438 * 16 15 13 34 34 H 1.09005 * 109.64249 * 187.11945 * 21 11 10 35 35 H 1.08993 * 109.64696 * 307.54173 * 21 11 10 36 36 H 1.08995 * 109.53962 * 77.05860 * 22 8 7 37 37 H 1.09002 * 109.11692 * 317.37159 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5315 1.2779 -0.0006 6 6 4.1361 2.4580 0.1129 7 6 3.3221 3.6999 0.3704 8 6 4.2463 4.8712 0.5830 9 6 4.5200 5.6212 -0.4359 10 6 5.4084 6.8292 -0.3762 11 6 6.2599 6.7949 0.8948 12 1 7.0048 6.0031 0.8155 13 6 6.9493 8.1223 1.0786 14 1 6.7647 8.7082 1.9669 15 6 7.8156 8.5888 0.1128 16 7 8.0408 7.8751 -0.9687 17 14 8.6696 10.2345 0.3404 18 1 9.4944 10.1977 1.5746 19 1 9.5426 10.5052 -0.8300 20 1 7.6510 11.3087 0.4576 21 6 5.3380 6.5179 2.0890 22 6 4.7962 5.0925 1.9618 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 4.1194 0.3767 -0.0931 27 1 5.2100 2.5258 0.0206 28 1 2.7090 3.5547 1.2598 29 1 2.6780 3.8964 -0.4868 30 1 4.0779 5.3641 -1.3872 31 1 6.0618 6.8406 -1.2487 32 1 4.7943 7.7296 -0.3755 33 1 8.6499 8.2035 -1.6483 34 1 5.9016 6.6141 3.0171 35 1 4.5118 7.2288 2.0868 36 1 5.6004 4.3819 2.1519 37 1 4.0008 4.9418 2.6917 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714485427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:12 Heat of formation + Delta-G solvation = -88.427360 kcal Electronic energy + Delta-G solvation = -17779.499555 eV Core-core repulsion = 14907.236385 eV Total energy + Delta-G solvation = -2872.263169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39944 -39.60840 -37.74203 -35.93858 -34.45865 -32.31648 -31.22921 -29.17975 -27.96933 -25.84567 -23.97136 -23.63282 -21.85479 -20.63593 -18.75540 -18.44735 -18.14278 -17.32320 -17.00276 -16.57838 -16.11234 -15.12188 -14.97040 -14.64456 -14.47077 -14.24536 -14.15721 -13.81925 -13.48404 -13.14892 -13.02688 -12.96709 -12.82444 -12.60116 -12.48715 -12.17765 -11.91171 -11.74452 -11.31605 -11.21541 -10.76487 -10.58111 -10.44693 -10.38687 -9.47244 -8.07025 -6.20217 0.17800 1.42057 1.42996 1.48572 1.50813 1.88804 1.96778 2.44640 3.20032 3.80890 4.00447 4.03955 4.07028 4.33752 4.35367 4.44013 4.50914 4.58351 4.71121 4.73085 4.87656 4.94855 4.99733 5.08796 5.13780 5.16780 5.26665 5.28153 5.34288 5.50038 5.54616 5.63094 5.86107 6.05121 6.14030 6.34917 6.42500 6.78318 6.91913 7.47596 8.97707 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.061995 B = 0.003756 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.539283 B = 7453.637057 C = 7572.181298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.486 3.514 4 O -0.536 6.536 5 C -0.212 4.212 6 C -0.027 4.027 7 C -0.053 4.053 8 C -0.138 4.138 9 C -0.149 4.149 10 C -0.074 4.074 11 C 0.048 3.952 12 H -0.002 1.002 13 C -0.538 4.538 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.105 4.105 22 C -0.072 4.072 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.131 0.869 26 H 0.169 0.831 27 H 0.150 0.850 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 -15.582 2.078 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.334 3.666 4 O -0.428 6.428 5 C -0.231 4.231 6 C -0.045 4.045 7 C -0.090 4.090 8 C -0.138 4.138 9 C -0.167 4.167 10 C -0.111 4.111 11 C 0.029 3.971 12 H 0.016 0.984 13 C -0.576 4.576 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.143 4.143 22 C -0.109 4.109 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.149 0.851 26 H 0.186 0.814 27 H 0.167 0.833 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.438 -15.317 1.913 19.212 hybrid contribution 0.415 1.209 -0.282 1.308 sum -11.023 -14.109 1.631 17.978 Atomic orbital electron populations 1.23503 0.74967 1.05557 1.02356 1.86585 1.24831 1.32438 1.84183 1.22084 0.90940 0.81143 0.72427 1.90861 1.68157 1.36548 1.47237 1.22091 0.89055 1.00527 1.11422 1.24121 1.01379 0.92559 0.86453 1.20038 0.95380 0.90623 1.02919 1.20958 0.99679 0.97638 0.95501 1.22267 0.99137 0.97412 0.97868 1.20330 0.95780 0.93555 1.01481 1.18644 0.92294 0.94547 0.91591 0.98399 1.21596 1.25660 1.05600 1.04735 0.93116 1.25745 0.97273 1.00522 0.95061 1.70029 1.36883 1.39201 1.09509 0.85708 0.78535 0.80393 0.77596 1.19628 1.20935 1.19835 1.21581 0.98300 0.95849 0.98572 1.20367 0.99896 0.96781 0.93883 0.92122 0.92234 0.85054 0.81405 0.83270 0.89404 0.89660 0.88578 0.92031 0.94834 0.93087 0.93019 0.93819 0.90860 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.36 -7.52 10.58 -57.07 -0.60 -8.12 16 3 C 0.49 11.76 7.83 70.10 0.55 12.31 16 4 O -0.54 -15.82 12.99 19.72 0.26 -15.57 16 5 C -0.21 -4.34 10.15 23.40 0.24 -4.10 16 6 C -0.03 -0.62 9.64 24.53 0.24 -0.39 16 7 C -0.05 -1.53 3.79 29.10 0.11 -1.42 16 8 C -0.14 -4.74 5.03 -15.10 -0.08 -4.82 16 9 C -0.15 -5.92 9.37 27.03 0.25 -5.67 16 10 C -0.07 -3.63 5.04 29.66 0.15 -3.48 16 11 C 0.05 2.43 2.15 -11.40 -0.02 2.41 16 12 H 0.00 -0.12 8.12 -2.39 -0.02 -0.14 16 13 C -0.54 -30.24 8.56 25.60 0.22 -30.02 16 14 H 0.05 2.80 7.75 -2.91 -0.02 2.78 16 15 C 0.01 0.71 5.31 84.65 0.45 1.16 16 16 N -0.92 -53.55 11.47 21.45 0.25 -53.31 16 17 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C -0.11 -4.42 5.26 30.73 0.16 -4.26 16 22 C -0.07 -2.46 5.81 29.66 0.17 -2.29 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 27 H 0.15 3.21 7.99 -2.91 -0.02 3.19 16 28 H 0.09 2.51 7.36 -2.39 -0.02 2.49 16 29 H 0.09 2.65 6.75 -2.38 -0.02 2.63 16 30 H 0.10 3.53 7.75 -2.91 -0.02 3.51 16 31 H 0.06 3.37 6.44 -2.38 -0.02 3.36 16 32 H 0.03 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.08 2.28 8.11 -2.39 -0.02 2.26 16 Total: -1.00 -64.82 307.93 6.60 -58.23 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.03 Total: 11.54 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.64 Total: -38.94 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.25 Total: -53.31 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.35 Total: -23.69 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.82 6.60 -58.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714485427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.198 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds