Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 H 1.08996 * 109.47010 * 54.99923 * 3 2 1 5 5 O 1.42896 * 109.47191 * 294.99719 * 3 2 1 6 6 C 1.35674 * 117.00057 * 99.46189 * 5 3 2 7 7 C 1.39315 * 119.81921 * 354.41725 * 6 5 3 8 8 C 1.36437 * 120.18780 * 179.97438 * 7 6 5 9 9 C 1.40833 * 119.80738 * 0.27373 * 8 7 6 10 10 C 1.41219 * 120.17656 * 179.72265 * 9 8 7 11 11 H 1.08003 * 119.99878 * 25.20359 * 10 9 8 12 12 C 1.39880 * 119.99989 * 205.20311 * 10 9 8 13 13 N 1.30884 * 120.00351 * 16.80970 * 12 10 9 14 14 Si 1.86800 * 120.00000 * 196.81318 * 12 10 9 15 15 H 1.48493 * 109.47443 * 59.99485 * 14 12 10 16 16 H 1.48505 * 109.47256 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46904 * 299.99786 * 14 12 10 18 18 C 1.40834 * 119.64414 * 359.42822 * 9 8 7 19 19 C 1.36435 * 119.81068 * 0.57439 * 18 9 8 20 20 C 1.53001 * 109.47000 * 174.99517 * 3 2 1 21 21 H 1.08995 * 109.47417 * 295.00150 * 20 3 2 22 22 C 1.53006 * 109.46896 * 174.99987 * 20 3 2 23 23 O 1.42897 * 109.47131 * 55.00334 * 20 3 2 24 24 H 1.09010 * 109.46892 * 60.00328 * 1 2 3 25 25 H 1.09007 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47368 * 300.00430 * 1 2 3 27 27 H 1.08998 * 109.47368 * 239.99570 * 2 1 3 28 28 H 1.09007 * 109.46640 * 120.00134 * 2 1 3 29 29 H 1.08005 * 119.90212 * 359.97008 * 7 6 5 30 30 H 1.07996 * 120.09429 * 180.02562 * 8 7 6 31 31 H 0.97001 * 120.00505 * 180.02562 * 13 12 10 32 32 H 1.08005 * 120.09549 * 180.29554 * 18 9 8 33 33 H 1.08000 * 119.91119 * 179.70366 * 19 18 9 34 34 H 1.09003 * 109.46923 * 60.00145 * 22 20 3 35 35 H 1.09003 * 109.46964 * 180.02562 * 22 20 3 36 36 H 1.08995 * 109.47220 * 300.00283 * 22 20 3 37 37 H 0.96703 * 114.00333 * 59.99798 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0813 -1.2210 6 6 0.5691 2.8843 -1.1834 7 6 -0.1940 2.9617 -0.0205 8 6 -1.2943 3.7671 0.0258 9 6 -1.6611 4.5171 -1.1084 10 6 -2.8017 5.3488 -1.0710 11 1 -3.1555 5.7382 -0.1277 12 6 -3.4735 5.6684 -2.2556 13 7 -3.2676 4.9594 -3.3364 14 14 -4.6643 7.1071 -2.2952 15 1 -3.9430 8.3565 -1.9435 16 1 -5.2414 7.2347 -3.6576 17 1 -5.7558 6.8733 -1.3157 18 6 -0.8806 4.4381 -2.2780 19 6 0.2167 3.6278 -2.3077 20 6 3.5648 1.4442 0.1258 21 1 3.8498 1.0376 1.0961 22 6 4.0852 2.8776 0.0007 23 8 4.1293 0.6403 -0.9119 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 0.0861 2.3823 0.8469 30 1 -1.8846 3.8262 0.9283 31 1 -3.7332 5.1812 -4.1580 32 1 -1.1524 5.0138 -3.1504 33 1 0.8136 3.5623 -3.2054 34 1 3.6546 3.4908 0.7924 35 1 5.1716 2.8788 0.0899 36 1 3.8002 3.2842 -0.9695 37 1 3.9164 0.9443 -1.8049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720108457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = -83.185278 kcal Electronic energy + Delta-G solvation = -18593.808946 eV Core-core repulsion = 15721.773090 eV Total energy + Delta-G solvation = -2872.035856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.58442 -37.41613 -35.92626 -33.42587 -32.90088 -30.76237 -29.64183 -29.05307 -26.40701 -24.70983 -22.13133 -21.89580 -20.76814 -19.77351 -17.57480 -17.19691 -16.45602 -15.26776 -14.91254 -14.75902 -14.62661 -14.21762 -13.86040 -13.19565 -12.88408 -12.50026 -12.28331 -12.12555 -12.09824 -11.84042 -11.58633 -11.41224 -11.15224 -11.11785 -10.88058 -10.85851 -10.58401 -10.41591 -10.06922 -9.79998 -9.56010 -9.25819 -8.98808 -7.64448 -6.99858 -6.72082 -4.26244 2.78350 2.94277 3.07346 3.09813 3.21287 3.94508 4.02957 4.49526 4.61487 4.88603 5.07813 5.31806 5.38045 5.47943 5.61465 5.66377 5.79859 5.97602 6.03061 6.06171 6.12780 6.20573 6.22733 6.35051 6.44961 6.70514 6.74616 6.97441 7.11531 7.19070 7.46331 7.55016 7.74496 7.80651 7.99673 8.19781 8.45208 8.65047 8.89676 8.98161 10.22522 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040172 B = 0.005132 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.839014 B = 5454.601474 C = 5645.173508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.051 3.949 4 H 0.079 0.921 5 O -0.320 6.320 6 C -0.003 4.003 7 C -0.167 4.167 8 C -0.197 4.197 9 C 0.088 3.912 10 C -0.465 4.465 11 H 0.075 0.925 12 C 0.075 3.925 13 N -0.801 5.801 14 Si 0.907 3.093 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.267 1.267 18 C -0.133 4.133 19 C -0.122 4.122 20 C 0.108 3.892 21 H 0.102 0.898 22 C -0.183 4.183 23 O -0.564 6.564 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.280 0.720 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 -4.204 4.042 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C -0.007 4.007 4 H 0.097 0.903 5 O -0.236 6.236 6 C -0.046 4.046 7 C -0.186 4.186 8 C -0.217 4.217 9 C 0.086 3.914 10 C -0.495 4.495 11 H 0.093 0.907 12 C -0.141 4.141 13 N -0.427 5.427 14 Si 0.732 3.268 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.153 4.153 19 C -0.141 4.141 20 C 0.049 3.951 21 H 0.120 0.880 22 C -0.240 4.240 23 O -0.370 6.370 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.000 -4.595 4.139 10.112 hybrid contribution -1.064 0.929 -0.257 1.435 sum 6.937 -3.666 3.882 8.754 Atomic orbital electron populations 1.21912 0.95226 1.00990 1.03106 1.21822 0.96531 0.96112 1.02337 1.23051 0.94920 0.93576 0.89143 0.90287 1.85797 1.44903 1.60491 1.32370 1.18530 0.90786 0.99352 0.95898 1.20493 0.98452 1.03272 0.96381 1.20570 0.99584 1.01917 0.99602 1.17585 0.92153 0.90712 0.90976 1.19424 1.09631 1.26552 0.93885 0.90685 1.25856 0.97028 0.96167 0.95077 1.69818 1.36972 1.34065 1.01868 0.86391 0.80354 0.82009 0.78072 1.18921 1.20394 1.19124 1.20960 0.93612 1.00673 1.00020 1.19824 0.99288 0.99485 0.95529 1.22088 0.90254 0.91123 0.91682 0.88026 1.22411 1.00939 0.96895 1.03800 1.86435 1.76479 1.55916 1.18177 0.91256 0.93435 0.92804 0.91003 0.91807 0.88290 0.88897 0.90908 0.85821 0.88681 0.91834 0.92338 0.91123 0.77057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.48 37.16 0.32 -2.11 16 2 C -0.13 -1.87 5.36 -26.73 -0.14 -2.01 16 3 C 0.05 0.77 2.02 -26.73 -0.05 0.72 16 4 H 0.08 1.24 5.39 -51.93 -0.28 0.96 16 5 O -0.32 -5.94 8.35 -23.58 -0.20 -6.14 16 6 C 0.00 -0.06 5.68 -38.78 -0.22 -0.28 16 7 C -0.17 -3.61 7.29 -39.83 -0.29 -3.90 16 8 C -0.20 -4.72 9.74 -39.25 -0.38 -5.10 16 9 C 0.09 2.31 5.57 -106.80 -0.59 1.72 16 10 C -0.46 -12.24 9.04 -37.84 -0.34 -12.58 16 11 H 0.08 1.90 7.90 -52.48 -0.41 1.48 16 12 C 0.08 1.88 5.15 -17.34 -0.09 1.79 16 13 N -0.80 -20.66 10.96 55.54 0.61 -20.05 16 14 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 15 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 16 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 18 C -0.13 -3.41 8.63 -39.25 -0.34 -3.75 16 19 C -0.12 -2.86 9.92 -39.83 -0.40 -3.25 16 20 C 0.11 1.41 3.52 -26.73 -0.09 1.32 16 21 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.18 -2.34 9.34 37.16 0.35 -1.99 16 23 O -0.56 -7.68 12.56 -40.08 -0.50 -8.19 16 24 H 0.07 1.30 6.54 -51.92 -0.34 0.96 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.83 6.72 -51.93 -0.35 0.48 16 27 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.10 1.88 4.25 -52.48 -0.22 1.66 16 30 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 32 H 0.12 3.27 6.19 -52.48 -0.32 2.94 16 33 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.01 7.56 -51.93 -0.39 0.62 16 37 H 0.38 4.68 8.73 45.56 0.40 5.07 16 LS Contribution 298.63 15.07 4.50 4.50 Total: -1.00 -27.19 298.63 -7.32 -34.51 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.42 Total: 11.20 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -2.28 Total: -29.43 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.61 Total: -20.05 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.70 Total: -14.32 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.19 -7.32 -34.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720108457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.674 kcal (2) G-P(sol) polarization free energy of solvation -27.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds