Wall clock time and date at job start Mon Mar 30 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 H 1.08996 * 109.47010 * 54.99923 * 3 2 1 5 5 O 1.42896 * 109.47191 * 294.99719 * 3 2 1 6 6 C 1.35674 * 117.00057 * 99.46189 * 5 3 2 7 7 C 1.39315 * 119.81921 * 354.41725 * 6 5 3 8 8 C 1.36437 * 120.18780 * 179.97438 * 7 6 5 9 9 C 1.40833 * 119.80738 * 0.27373 * 8 7 6 10 10 C 1.41219 * 120.17656 * 179.72265 * 9 8 7 11 11 H 1.08003 * 119.99878 * 25.20359 * 10 9 8 12 12 C 1.39880 * 119.99989 * 205.20311 * 10 9 8 13 13 N 1.30884 * 120.00351 * 16.80970 * 12 10 9 14 14 Si 1.86800 * 120.00000 * 196.81318 * 12 10 9 15 15 H 1.48493 * 109.47443 * 59.99485 * 14 12 10 16 16 H 1.48505 * 109.47256 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46904 * 299.99786 * 14 12 10 18 18 C 1.40834 * 119.64414 * 359.42822 * 9 8 7 19 19 C 1.36435 * 119.81068 * 0.57439 * 18 9 8 20 20 C 1.53001 * 109.47000 * 174.99517 * 3 2 1 21 21 H 1.08995 * 109.47417 * 295.00150 * 20 3 2 22 22 C 1.53006 * 109.46896 * 174.99987 * 20 3 2 23 23 O 1.42897 * 109.47131 * 55.00334 * 20 3 2 24 24 H 1.09010 * 109.46892 * 60.00328 * 1 2 3 25 25 H 1.09007 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47368 * 300.00430 * 1 2 3 27 27 H 1.08998 * 109.47368 * 239.99570 * 2 1 3 28 28 H 1.09007 * 109.46640 * 120.00134 * 2 1 3 29 29 H 1.08005 * 119.90212 * 359.97008 * 7 6 5 30 30 H 1.07996 * 120.09429 * 180.02562 * 8 7 6 31 31 H 0.97001 * 120.00505 * 180.02562 * 13 12 10 32 32 H 1.08005 * 120.09549 * 180.29554 * 18 9 8 33 33 H 1.08000 * 119.91119 * 179.70366 * 19 18 9 34 34 H 1.09003 * 109.46923 * 60.00145 * 22 20 3 35 35 H 1.09003 * 109.46964 * 180.02562 * 22 20 3 36 36 H 1.08995 * 109.47220 * 300.00283 * 22 20 3 37 37 H 0.96703 * 114.00333 * 59.99798 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0813 -1.2210 6 6 0.5691 2.8843 -1.1834 7 6 -0.1940 2.9617 -0.0205 8 6 -1.2943 3.7671 0.0258 9 6 -1.6611 4.5171 -1.1084 10 6 -2.8017 5.3488 -1.0710 11 1 -3.1555 5.7382 -0.1277 12 6 -3.4735 5.6684 -2.2556 13 7 -3.2676 4.9594 -3.3364 14 14 -4.6643 7.1071 -2.2952 15 1 -3.9430 8.3565 -1.9435 16 1 -5.2414 7.2347 -3.6576 17 1 -5.7558 6.8733 -1.3157 18 6 -0.8806 4.4381 -2.2780 19 6 0.2167 3.6278 -2.3077 20 6 3.5648 1.4442 0.1258 21 1 3.8498 1.0376 1.0961 22 6 4.0852 2.8776 0.0007 23 8 4.1293 0.6403 -0.9119 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 0.0861 2.3823 0.8469 30 1 -1.8846 3.8262 0.9283 31 1 -3.7332 5.1812 -4.1580 32 1 -1.1524 5.0138 -3.1504 33 1 0.8136 3.5623 -3.2054 34 1 3.6546 3.4908 0.7924 35 1 5.1716 2.8788 0.0899 36 1 3.8002 3.2842 -0.9695 37 1 3.9164 0.9443 -1.8049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720108457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:31 Heat of formation + Delta-G solvation = -99.101040 kcal Electronic energy + Delta-G solvation = -18594.499105 eV Core-core repulsion = 15721.773090 eV Total energy + Delta-G solvation = -2872.726015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07024 -38.94168 -37.36741 -35.18713 -34.25863 -31.88405 -31.46593 -30.85979 -27.72207 -26.47469 -23.73048 -22.99748 -22.58135 -21.25863 -19.30429 -18.83310 -17.68667 -17.04698 -16.23990 -16.10497 -15.96378 -15.72803 -15.30223 -14.77566 -14.53904 -14.02013 -13.76085 -13.69550 -13.52197 -13.24082 -12.99581 -12.80115 -12.65005 -12.56969 -12.46209 -12.30989 -12.00110 -11.73146 -11.61710 -11.51150 -11.02569 -10.92092 -10.61040 -9.51429 -8.83679 -8.56820 -6.20689 0.98888 1.06283 1.39462 1.50177 1.54786 2.23255 2.60363 2.75339 3.43531 3.71276 3.77321 3.96276 4.06744 4.31757 4.34253 4.37933 4.42209 4.46330 4.66608 4.84582 4.89047 4.94271 5.03460 5.05815 5.09282 5.22937 5.24961 5.33145 5.33903 5.44586 5.63236 5.69549 5.92815 6.08214 6.29921 6.59324 6.74239 6.86154 6.97683 7.14234 8.39194 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040172 B = 0.005132 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.839014 B = 5454.601474 C = 5645.173508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.043 3.957 4 H 0.079 0.921 5 O -0.321 6.321 6 C 0.018 3.982 7 C -0.163 4.163 8 C -0.206 4.206 9 C 0.053 3.947 10 C -0.502 4.502 11 H 0.074 0.926 12 C 0.034 3.966 13 N -0.835 5.835 14 Si 0.980 3.020 15 H -0.261 1.261 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.152 4.152 19 C -0.137 4.137 20 C 0.113 3.887 21 H 0.128 0.872 22 C -0.181 4.181 23 O -0.569 6.569 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.101 0.899 31 H 0.286 0.714 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 -4.962 5.296 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.014 4.014 4 H 0.097 0.903 5 O -0.237 6.237 6 C -0.026 4.026 7 C -0.181 4.181 8 C -0.226 4.226 9 C 0.051 3.949 10 C -0.532 4.532 11 H 0.092 0.908 12 C -0.179 4.179 13 N -0.462 5.462 14 Si 0.801 3.199 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.185 1.185 18 C -0.171 4.171 19 C -0.156 4.156 20 C 0.054 3.946 21 H 0.146 0.854 22 C -0.238 4.238 23 O -0.376 6.376 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.986 -5.370 5.398 11.778 hybrid contribution -1.200 0.999 -0.594 1.671 sum 7.785 -4.371 4.804 10.139 Atomic orbital electron populations 1.21875 0.96332 1.01655 1.01232 1.21812 0.95385 0.95504 1.03572 1.23411 0.96737 0.93753 0.87482 0.90274 1.85806 1.43355 1.59861 1.34674 1.18530 0.90966 0.98071 0.95052 1.20731 0.97391 1.02569 0.97390 1.20789 1.00488 1.02005 0.99310 1.17923 0.92915 0.91989 0.92066 1.19672 1.10672 1.28244 0.94636 0.90819 1.26686 0.98586 0.98378 0.94282 1.69883 1.38270 1.35527 1.02545 0.85290 0.77967 0.78201 0.78451 1.18572 1.19397 1.18489 1.20867 0.94800 1.01848 0.99623 1.19988 0.99038 0.99678 0.96859 1.22166 0.88285 0.91421 0.92691 0.85429 1.22391 1.02077 0.96683 1.02684 1.86432 1.76422 1.56136 1.18629 0.94907 0.91680 0.92707 0.91370 0.88889 0.85281 0.88084 0.90356 0.87576 0.87481 0.91690 0.90693 0.93104 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 8.48 71.98 0.61 -3.87 16 2 C -0.13 -3.20 5.36 30.59 0.16 -3.04 16 3 C 0.04 1.19 2.02 30.59 0.06 1.25 16 4 H 0.08 2.23 5.39 -2.39 -0.01 2.21 16 5 O -0.32 -11.46 8.35 -85.28 -0.71 -12.17 16 6 C 0.02 0.76 5.68 22.79 0.13 0.89 16 7 C -0.16 -6.86 7.29 22.11 0.16 -6.70 16 8 C -0.21 -9.97 9.74 22.48 0.22 -9.75 16 9 C 0.05 2.88 5.57 -21.28 -0.12 2.76 16 10 C -0.50 -27.30 9.04 23.40 0.21 -27.09 16 11 H 0.07 3.85 7.90 -2.91 -0.02 3.83 16 12 C 0.03 1.74 5.15 85.23 0.44 2.18 16 13 N -0.84 -44.47 10.96 21.82 0.24 -44.23 16 14 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 15 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 16 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 C -0.15 -8.07 8.63 22.48 0.19 -7.88 16 19 C -0.14 -6.50 9.92 22.11 0.22 -6.28 16 20 C 0.11 2.59 3.52 30.60 0.11 2.70 16 21 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 22 C -0.18 -4.18 9.34 71.98 0.67 -3.50 16 23 O -0.57 -13.84 12.56 -144.34 -1.81 -15.66 16 24 H 0.03 1.18 6.54 -2.38 -0.02 1.17 16 25 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.05 1.56 6.72 -2.39 -0.02 1.55 16 27 H 0.07 1.82 7.73 -2.39 -0.02 1.81 16 28 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.13 4.60 4.25 -2.91 -0.01 4.59 16 30 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 32 H 0.11 5.91 6.19 -2.91 -0.02 5.89 16 33 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.37 7.56 -2.39 -0.02 1.35 16 37 H 0.39 8.64 8.73 -74.06 -0.65 7.99 16 Total: -1.00 -59.45 298.63 3.24 -56.21 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.43 Total: 33.43 kcal Atomic # 6 Polarization: -61.40 SS G_CDS: 3.07 Total: -58.32 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.24 Total: -44.23 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -2.52 Total: -27.82 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -59.45 3.24 -56.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720108457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.889 kcal (2) G-P(sol) polarization free energy of solvation -59.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds