Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47162 * 2 1 4 4 H 1.09008 * 109.47308 * 54.99804 * 3 2 1 5 5 O 1.42899 * 109.47594 * 294.99841 * 3 2 1 6 6 C 1.35678 * 116.99948 * 95.22248 * 5 3 2 7 7 C 1.39313 * 119.81462 * 182.41280 * 6 5 3 8 8 C 1.36439 * 120.18443 * 179.76294 * 7 6 5 9 9 C 1.40837 * 119.80924 * 0.51181 * 8 7 6 10 10 C 1.41212 * 120.17834 * 179.71748 * 9 8 7 11 11 H 1.08000 * 120.00171 * 25.40468 * 10 9 8 12 12 C 1.39890 * 119.99859 * 205.40251 * 10 9 8 13 13 N 1.30882 * 120.00263 * 16.80546 * 12 10 9 14 14 Si 1.86806 * 119.99716 * 196.80486 * 12 10 9 15 15 H 1.48493 * 109.47475 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46957 * 120.00437 * 14 12 10 17 17 H 1.48498 * 109.47036 * 239.99673 * 14 12 10 18 18 C 1.40830 * 119.64087 * 359.74595 * 9 8 7 19 19 C 1.36438 * 119.81442 * 359.97438 * 18 9 8 20 20 C 1.53003 * 109.47330 * 174.99692 * 3 2 1 21 21 H 1.09000 * 109.46781 * 59.99522 * 20 3 2 22 22 C 1.52995 * 109.47330 * 179.97438 * 20 3 2 23 23 O 1.42899 * 109.46903 * 300.00572 * 20 3 2 24 24 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47351 * 300.00540 * 1 2 3 26 26 H 1.09002 * 109.46763 * 59.99993 * 1 2 3 27 27 H 1.09002 * 109.46763 * 120.00007 * 2 1 3 28 28 H 1.08994 * 109.46860 * 240.00010 * 2 1 3 29 29 H 1.07998 * 119.90732 * 0.02723 * 7 6 5 30 30 H 1.07998 * 120.10014 * 180.25596 * 8 7 6 31 31 H 0.96997 * 119.99746 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.09329 * 179.97438 * 18 9 8 33 33 H 1.08001 * 119.90785 * 179.97438 * 19 18 9 34 34 H 1.09003 * 109.46911 * 60.00315 * 22 20 3 35 35 H 1.09003 * 109.47155 * 180.02562 * 22 20 3 36 36 H 1.09001 * 109.47299 * 299.99970 * 22 20 3 37 37 H 0.96703 * 113.99966 * 180.02562 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6621 2.0814 -1.2210 6 6 0.5197 2.8132 -1.2053 7 6 0.0695 3.4197 -2.3759 8 6 -1.0809 4.1533 -2.3698 9 6 -1.8079 4.3053 -1.1732 10 6 -2.9964 5.0678 -1.1567 11 1 -3.5722 5.1900 -2.0622 12 6 -3.4279 5.6648 0.0325 13 7 -2.5968 5.8043 1.0339 14 14 -5.1905 6.2629 0.1913 15 1 -5.9217 5.9898 -1.0719 16 1 -5.8558 5.5507 1.3118 17 1 -5.1953 7.7232 0.4609 18 6 -1.3429 3.6934 0.0069 19 6 -0.1937 2.9584 -0.0176 20 6 3.5649 1.4443 0.1258 21 1 3.9995 0.9052 -0.7160 22 6 4.0750 2.8868 0.1252 23 8 3.9429 0.8054 1.3468 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 0.6304 3.3054 -3.2917 30 1 -1.4309 4.6194 -3.2790 31 1 -2.8960 6.2186 1.8584 32 1 -1.8945 3.8055 0.9286 33 1 0.1645 2.4888 0.8866 34 1 3.6403 3.4262 0.9668 35 1 5.1613 2.8880 0.2143 36 1 3.7867 3.3737 -0.8065 37 1 4.8981 0.7706 1.4933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720108463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = -79.743398 kcal Electronic energy + Delta-G solvation = -18572.995214 eV Core-core repulsion = 15701.108610 eV Total energy + Delta-G solvation = -2871.886604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.46734 -37.43938 -36.17175 -33.49251 -32.74547 -30.80769 -29.59030 -29.02616 -26.39894 -24.64787 -22.01797 -21.77477 -20.91021 -19.43797 -17.88192 -17.29115 -16.38826 -15.54939 -15.14618 -14.68899 -14.25095 -14.05025 -13.85671 -12.94122 -12.83656 -12.66727 -12.38039 -12.21515 -12.09761 -11.81833 -11.57914 -11.40279 -11.25024 -11.10573 -10.92446 -10.66232 -10.47464 -10.21742 -9.98951 -9.80511 -9.62642 -9.20952 -8.97967 -7.61316 -6.95960 -6.70020 -4.23500 2.77623 2.98724 3.09774 3.14972 3.21755 3.68505 3.96805 4.63325 4.80992 4.88680 5.07529 5.23815 5.48385 5.54561 5.68974 5.71296 5.85098 5.96913 6.08565 6.17973 6.20048 6.28907 6.29640 6.36695 6.47875 6.76524 6.77904 6.94527 7.09353 7.30896 7.44117 7.57912 7.62066 7.93950 8.02531 8.17669 8.47089 8.67851 8.92474 9.01317 10.24418 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.005329 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.377143 B = 5253.093259 C = 5297.316828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C 0.091 3.909 4 H 0.081 0.919 5 O -0.318 6.318 6 C -0.002 4.002 7 C -0.116 4.116 8 C -0.197 4.197 9 C 0.087 3.913 10 C -0.463 4.463 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.802 5.802 14 Si 0.906 3.094 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.276 1.276 18 C -0.131 4.131 19 C -0.172 4.172 20 C 0.105 3.895 21 H 0.059 0.941 22 C -0.183 4.183 23 O -0.564 6.564 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.278 0.722 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -6.625 0.761 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.034 3.966 4 H 0.099 0.901 5 O -0.234 6.234 6 C -0.045 4.045 7 C -0.134 4.134 8 C -0.217 4.217 9 C 0.085 3.915 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.142 4.142 13 N -0.428 5.428 14 Si 0.731 3.269 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.201 1.201 18 C -0.151 4.151 19 C -0.191 4.191 20 C 0.046 3.954 21 H 0.077 0.923 22 C -0.240 4.240 23 O -0.370 6.370 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.703 -6.601 0.887 10.183 hybrid contribution -0.201 0.482 0.343 0.625 sum 7.502 -6.119 1.230 9.759 Atomic orbital electron populations 1.21892 0.95124 1.00904 1.03249 1.21914 0.96845 0.96210 1.02079 1.21954 0.92153 0.93593 0.88929 0.90080 1.85776 1.40817 1.64037 1.32787 1.18496 0.89363 1.01799 0.94874 1.19585 0.97897 1.01266 0.94691 1.20577 0.96536 1.05933 0.98605 1.17599 0.92343 0.90732 0.90866 1.19492 1.06626 1.27572 0.95660 0.90547 1.25861 0.98838 0.94249 0.95221 1.69841 1.35064 1.33413 1.04505 0.86303 0.82674 0.78614 0.79354 1.18479 1.19828 1.20107 1.20943 0.96504 0.97930 0.99679 1.20672 0.98660 1.04303 0.95472 1.21653 0.94814 0.92614 0.86295 0.92288 1.22438 1.00287 0.97253 1.04022 1.86440 1.28254 1.81140 1.41155 0.93494 0.92572 0.91338 0.90810 0.91996 0.88671 0.88335 0.91101 0.86201 0.88245 0.91874 0.92805 0.90485 0.77505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.49 37.16 0.32 -2.25 16 2 C -0.13 -2.07 5.56 -26.73 -0.15 -2.22 16 3 C 0.09 1.55 1.95 -26.73 -0.05 1.50 16 4 H 0.08 1.51 5.28 -51.92 -0.27 1.24 16 5 O -0.32 -6.33 8.96 -18.74 -0.17 -6.50 16 6 C 0.00 -0.05 5.36 -38.78 -0.21 -0.26 16 7 C -0.12 -2.66 9.92 -39.83 -0.40 -3.05 16 8 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 9 C 0.09 2.31 5.57 -106.80 -0.59 1.72 16 10 C -0.46 -12.31 9.04 -37.84 -0.34 -12.66 16 11 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 12 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 13 N -0.80 -20.86 10.95 55.54 0.61 -20.25 16 14 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 C -0.13 -3.38 8.63 -39.25 -0.34 -3.72 16 19 C -0.17 -4.00 7.20 -39.83 -0.29 -4.29 16 20 C 0.11 1.46 3.37 -26.73 -0.09 1.37 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.18 -2.45 9.39 37.16 0.35 -2.10 16 23 O -0.56 -7.04 12.56 -35.23 -0.44 -7.48 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 26 H 0.07 1.30 6.37 -51.93 -0.33 0.97 16 27 H 0.07 1.08 7.54 -51.93 -0.39 0.69 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 31 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 32 H 0.12 3.21 6.18 -52.48 -0.32 2.88 16 33 H 0.10 2.14 4.62 -52.49 -0.24 1.89 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.15 7.68 -51.93 -0.40 0.75 16 37 H 0.38 2.87 9.08 45.56 0.41 3.28 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -28.28 299.43 -7.20 -35.48 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.41 Total: 9.85 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -2.26 Total: -29.38 kcal Atomic # 7 Polarization: -20.86 SS G_CDS: 0.61 Total: -20.25 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.61 Total: -13.98 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.28 -7.20 -35.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720108463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.265 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds