Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47162 * 2 1 4 4 H 1.09008 * 109.47308 * 54.99804 * 3 2 1 5 5 O 1.42899 * 109.47594 * 294.99841 * 3 2 1 6 6 C 1.35678 * 116.99948 * 95.22248 * 5 3 2 7 7 C 1.39313 * 119.81462 * 182.41280 * 6 5 3 8 8 C 1.36439 * 120.18443 * 179.76294 * 7 6 5 9 9 C 1.40837 * 119.80924 * 0.51181 * 8 7 6 10 10 C 1.41212 * 120.17834 * 179.71748 * 9 8 7 11 11 H 1.08000 * 120.00171 * 25.40468 * 10 9 8 12 12 C 1.39890 * 119.99859 * 205.40251 * 10 9 8 13 13 N 1.30882 * 120.00263 * 16.80546 * 12 10 9 14 14 Si 1.86806 * 119.99716 * 196.80486 * 12 10 9 15 15 H 1.48493 * 109.47475 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46957 * 120.00437 * 14 12 10 17 17 H 1.48498 * 109.47036 * 239.99673 * 14 12 10 18 18 C 1.40830 * 119.64087 * 359.74595 * 9 8 7 19 19 C 1.36438 * 119.81442 * 359.97438 * 18 9 8 20 20 C 1.53003 * 109.47330 * 174.99692 * 3 2 1 21 21 H 1.09000 * 109.46781 * 59.99522 * 20 3 2 22 22 C 1.52995 * 109.47330 * 179.97438 * 20 3 2 23 23 O 1.42899 * 109.46903 * 300.00572 * 20 3 2 24 24 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47351 * 300.00540 * 1 2 3 26 26 H 1.09002 * 109.46763 * 59.99993 * 1 2 3 27 27 H 1.09002 * 109.46763 * 120.00007 * 2 1 3 28 28 H 1.08994 * 109.46860 * 240.00010 * 2 1 3 29 29 H 1.07998 * 119.90732 * 0.02723 * 7 6 5 30 30 H 1.07998 * 120.10014 * 180.25596 * 8 7 6 31 31 H 0.96997 * 119.99746 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.09329 * 179.97438 * 18 9 8 33 33 H 1.08001 * 119.90785 * 179.97438 * 19 18 9 34 34 H 1.09003 * 109.46911 * 60.00315 * 22 20 3 35 35 H 1.09003 * 109.47155 * 180.02562 * 22 20 3 36 36 H 1.09001 * 109.47299 * 299.99970 * 22 20 3 37 37 H 0.96703 * 113.99966 * 180.02562 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6621 2.0814 -1.2210 6 6 0.5197 2.8132 -1.2053 7 6 0.0695 3.4197 -2.3759 8 6 -1.0809 4.1533 -2.3698 9 6 -1.8079 4.3053 -1.1732 10 6 -2.9964 5.0678 -1.1567 11 1 -3.5722 5.1900 -2.0622 12 6 -3.4279 5.6648 0.0325 13 7 -2.5968 5.8043 1.0339 14 14 -5.1905 6.2629 0.1913 15 1 -5.9217 5.9898 -1.0719 16 1 -5.8558 5.5507 1.3118 17 1 -5.1953 7.7232 0.4609 18 6 -1.3429 3.6934 0.0069 19 6 -0.1937 2.9584 -0.0176 20 6 3.5649 1.4443 0.1258 21 1 3.9995 0.9052 -0.7160 22 6 4.0750 2.8868 0.1252 23 8 3.9429 0.8054 1.3468 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 0.6304 3.3054 -3.2917 30 1 -1.4309 4.6194 -3.2790 31 1 -2.8960 6.2186 1.8584 32 1 -1.8945 3.8055 0.9286 33 1 0.1645 2.4888 0.8866 34 1 3.6403 3.4262 0.9668 35 1 5.1613 2.8880 0.2143 36 1 3.7867 3.3737 -0.8065 37 1 4.8981 0.7706 1.4933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720108463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = -97.048220 kcal Electronic energy + Delta-G solvation = -18573.745608 eV Core-core repulsion = 15701.108610 eV Total energy + Delta-G solvation = -2872.636998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04678 -38.90163 -37.64689 -35.28810 -34.19481 -32.01024 -31.44995 -30.84346 -27.78797 -26.46182 -23.69117 -22.96967 -22.72827 -20.98584 -19.40595 -19.10330 -17.73749 -17.03299 -16.78105 -16.13468 -15.82973 -15.57629 -15.28338 -14.56825 -14.43331 -14.09846 -13.95497 -13.75794 -13.55805 -13.28262 -13.09480 -12.95824 -12.76008 -12.57863 -12.55866 -12.23783 -11.98282 -11.73948 -11.61689 -11.27075 -11.08309 -10.84341 -10.77799 -9.52081 -8.84788 -8.57710 -6.21259 0.95444 1.07032 1.39437 1.50788 1.54486 2.23114 2.33528 2.74239 3.61727 3.65316 3.74649 3.93527 3.98335 4.26219 4.32092 4.35312 4.44119 4.47917 4.65316 4.83379 4.89237 4.93009 4.97560 5.02984 5.05435 5.17244 5.20605 5.27008 5.38644 5.42884 5.56328 5.69699 6.00866 6.08509 6.25607 6.57919 6.81843 6.88286 6.97159 7.11789 8.38579 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.005329 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.377143 B = 5253.093259 C = 5297.316828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.080 3.920 4 H 0.061 0.939 5 O -0.317 6.317 6 C 0.014 3.986 7 C -0.123 4.123 8 C -0.204 4.204 9 C 0.054 3.946 10 C -0.499 4.499 11 H 0.075 0.925 12 C 0.033 3.967 13 N -0.835 5.835 14 Si 0.980 3.020 15 H -0.258 1.258 16 H -0.266 1.266 17 H -0.267 1.267 18 C -0.151 4.151 19 C -0.170 4.170 20 C 0.115 3.885 21 H 0.076 0.924 22 C -0.180 4.180 23 O -0.572 6.572 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.285 0.715 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.317 -7.578 0.774 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.023 3.977 4 H 0.079 0.921 5 O -0.233 6.233 6 C -0.030 4.030 7 C -0.142 4.142 8 C -0.224 4.224 9 C 0.052 3.948 10 C -0.530 4.530 11 H 0.093 0.907 12 C -0.180 4.180 13 N -0.462 5.462 14 Si 0.802 3.198 15 H -0.182 1.182 16 H -0.191 1.191 17 H -0.192 1.192 18 C -0.171 4.171 19 C -0.189 4.189 20 C 0.056 3.944 21 H 0.094 0.906 22 C -0.238 4.238 23 O -0.381 6.381 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.835 -7.569 0.902 11.669 hybrid contribution -0.358 0.665 0.356 0.836 sum 8.477 -6.904 1.258 11.004 Atomic orbital electron populations 1.21850 0.96159 1.01774 1.01195 1.21880 0.95794 0.95323 1.03344 1.22259 0.94759 0.93839 0.86846 0.92077 1.85768 1.39353 1.63629 1.34573 1.18547 0.89547 1.00648 0.94270 1.19866 0.97616 1.00779 0.95943 1.20777 0.96979 1.06196 0.98429 1.17939 0.93292 0.91713 0.91884 1.19728 1.07534 1.29123 0.96578 0.90720 1.26700 1.02949 0.93931 0.94400 1.69898 1.37011 1.34139 1.05164 0.85185 0.76986 0.78297 0.79376 1.18176 1.19089 1.19197 1.20875 0.97704 0.99473 0.99059 1.20771 0.97888 1.03677 0.96551 1.21458 0.92251 0.93180 0.87556 0.90581 1.22422 1.02475 0.96649 1.02248 1.86388 1.30722 1.80748 1.40292 0.91231 0.93759 0.94164 0.89227 0.90841 0.86156 0.87334 0.90407 0.87942 0.86926 0.93535 0.89405 0.92336 0.74740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 8.49 71.98 0.61 -4.30 16 2 C -0.13 -3.65 5.56 30.59 0.17 -3.48 16 3 C 0.08 2.59 1.95 30.59 0.06 2.65 16 4 H 0.06 2.24 5.28 -2.38 -0.01 2.23 16 5 O -0.32 -12.24 8.96 -89.96 -0.81 -13.04 16 6 C 0.01 0.61 5.36 22.79 0.12 0.73 16 7 C -0.12 -5.63 9.92 22.11 0.22 -5.41 16 8 C -0.20 -10.18 9.74 22.49 0.22 -9.96 16 9 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 10 C -0.50 -27.41 9.04 23.40 0.21 -27.20 16 11 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 12 C 0.03 1.72 5.15 85.23 0.44 2.16 16 13 N -0.83 -44.65 10.95 21.82 0.24 -44.41 16 14 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 18 C -0.15 -8.12 8.63 22.48 0.19 -7.93 16 19 C -0.17 -8.05 7.20 22.11 0.16 -7.89 16 20 C 0.11 2.87 3.37 30.59 0.10 2.97 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 C -0.18 -4.47 9.39 71.98 0.68 -3.79 16 23 O -0.57 -12.40 12.56 -148.98 -1.87 -14.27 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.50 6.91 -2.39 -0.02 1.48 16 26 H 0.04 1.51 6.37 -2.39 -0.02 1.49 16 27 H 0.09 2.36 7.54 -2.39 -0.02 2.34 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 31 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 32 H 0.10 5.76 6.18 -2.91 -0.02 5.75 16 33 H 0.11 4.94 4.62 -2.91 -0.01 4.92 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.66 7.68 -2.39 -0.02 1.65 16 37 H 0.40 4.53 9.08 -74.05 -0.67 3.86 16 Total: -1.00 -61.84 299.43 3.06 -58.79 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.40 Total: 30.50 kcal Atomic # 6 Polarization: -61.68 SS G_CDS: 3.07 Total: -58.62 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.24 Total: -44.41 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -2.68 Total: -27.31 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -61.84 3.06 -58.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720108463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.262 kcal (2) G-P(sol) polarization free energy of solvation -61.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds