Wall clock time and date at job start Mon Mar 30 2020 06:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46784 * 2 1 4 4 C 1.50697 * 109.46973 * 240.00583 * 2 1 3 5 5 H 1.07999 * 120.00089 * 274.98929 * 4 2 1 6 6 C 1.37877 * 120.00193 * 94.99797 * 4 2 1 7 7 N 1.31522 * 119.99719 * 184.77722 * 6 4 2 8 8 Si 1.86793 * 120.00195 * 4.77547 * 6 4 2 9 9 H 1.48502 * 109.47162 * 84.80458 * 8 6 4 10 10 H 1.48499 * 109.47405 * 204.80618 * 8 6 4 11 11 H 1.48505 * 109.47020 * 324.80738 * 8 6 4 12 12 O 1.45197 * 109.47312 * 120.00224 * 2 1 3 13 13 C 1.34804 * 116.99822 * 270.00198 * 12 2 1 14 14 O 1.21534 * 120.00121 * 359.97438 * 13 12 2 15 15 C 1.46954 * 119.99627 * 180.02562 * 13 12 2 16 16 C 1.33088 * 119.99682 * 185.47519 * 15 13 12 17 17 C 1.50696 * 119.99964 * 7.48223 * 16 15 13 18 18 C 1.52999 * 117.49895 * 132.11754 * 17 16 15 19 19 C 1.53000 * 117.50088 * 63.49183 * 17 16 15 20 20 C 1.50702 * 119.99760 * 187.48128 * 16 15 13 21 21 C 1.53001 * 117.49540 * 180.62036 * 20 16 15 22 22 C 1.52998 * 117.49794 * 111.99878 * 20 16 15 23 23 H 1.08998 * 109.47076 * 175.08602 * 1 2 3 24 24 H 1.08997 * 109.47245 * 55.08451 * 1 2 3 25 25 H 1.09006 * 109.47089 * 295.08504 * 1 2 3 26 26 H 0.97004 * 119.99408 * 179.97438 * 7 6 4 27 27 H 1.07992 * 120.00219 * 5.47034 * 15 13 12 28 28 H 1.09005 * 115.55071 * 277.82136 * 17 16 15 29 29 H 1.09000 * 117.49993 * 359.97438 * 18 17 16 30 30 H 1.09001 * 117.50111 * 145.02120 * 18 17 16 31 31 H 1.09000 * 117.49965 * 214.98091 * 19 17 16 32 32 H 1.08997 * 117.49884 * 359.97438 * 19 17 16 33 33 H 1.08995 * 115.54964 * 326.32683 * 20 16 15 34 34 H 1.08995 * 117.50151 * 359.97438 * 21 20 16 35 35 H 1.08997 * 117.49483 * 145.02132 * 21 20 16 36 36 H 1.09002 * 117.49962 * 214.97797 * 22 20 16 37 37 H 1.09002 * 117.49915 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1356 -1.7853 -1.2292 6 6 2.3601 0.0123 -2.3581 7 7 2.7084 -0.6129 -3.4615 8 14 2.3096 1.8791 -2.3185 9 1 3.5932 2.3978 -1.7813 10 1 2.1032 2.3980 -3.6945 11 1 1.1923 2.3258 -1.4482 12 8 2.0140 -0.6845 1.1855 13 6 2.2180 0.0672 2.2857 14 8 1.9977 1.2620 2.2548 15 6 2.7077 -0.5580 3.5222 16 6 2.8055 0.1610 4.6378 17 6 2.2587 1.5647 4.6800 18 6 1.3802 1.9450 5.8735 19 6 0.7503 1.7411 4.4941 20 6 3.4631 -0.4285 5.8590 21 6 3.5317 0.4431 7.1146 22 6 4.7990 0.1721 6.3013 23 1 -0.3633 -1.0239 -0.0880 24 1 -0.3633 0.5882 -0.8426 25 1 -0.3633 0.4357 0.9308 26 1 2.9387 -0.1045 -4.2549 27 1 2.9882 -1.6009 3.5256 28 1 2.9100 2.3356 4.2682 29 1 1.1974 1.1799 6.6280 30 1 1.4535 2.9663 6.2472 31 1 0.4093 2.6281 3.9604 32 1 0.1535 0.8419 4.3409 33 1 3.3229 -1.5005 5.9971 34 1 3.1015 1.4430 7.0573 35 1 3.4364 -0.0555 8.0791 36 1 5.5375 -0.5048 6.7308 37 1 5.2024 0.9933 5.7089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:53 Heat of formation + Delta-G solvation = -37.940668 kcal Electronic energy + Delta-G solvation = -18379.350304 eV Core-core repulsion = 15509.276402 eV Total energy + Delta-G solvation = -2870.073902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.36812 -39.77829 -37.50943 -36.65072 -35.15201 -33.43929 -32.40630 -27.49667 -26.45788 -23.98090 -23.61452 -23.09514 -22.60835 -21.39589 -19.67637 -19.01814 -18.41778 -17.35040 -16.83927 -16.63173 -16.27844 -15.95023 -15.13983 -14.96333 -14.64450 -14.49168 -14.03005 -13.63071 -13.51428 -13.05478 -12.91896 -12.61972 -12.59365 -12.46703 -12.30792 -12.03417 -11.85442 -11.61782 -11.38366 -11.30926 -11.17758 -11.10358 -10.88839 -10.58705 -9.99237 -8.48796 -6.58428 0.12356 1.23226 1.26160 1.37278 2.03669 2.08740 2.18014 2.85566 2.89587 3.00628 3.53136 3.68013 3.95268 4.06142 4.07547 4.15551 4.22301 4.25557 4.32223 4.50442 4.57056 4.62340 4.75347 4.84710 4.85806 4.95423 5.04063 5.14475 5.17828 5.24943 5.29342 5.33751 5.34700 5.35902 5.41580 5.71708 6.18023 6.49588 7.00030 7.13227 8.66962 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032742 B = 0.005460 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.953460 B = 5127.370835 C = 5353.415785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.185 3.815 3 H 0.037 0.963 4 C -0.533 4.533 5 H 0.045 0.955 6 C 0.035 3.965 7 N -0.924 5.924 8 Si 0.931 3.069 9 H -0.271 1.271 10 H -0.265 1.265 11 H -0.251 1.251 12 O -0.366 6.366 13 C 0.473 3.527 14 O -0.534 6.534 15 C -0.213 4.213 16 C 0.048 3.952 17 C -0.131 4.131 18 C -0.147 4.147 19 C -0.164 4.164 20 C -0.146 4.146 21 C -0.161 4.161 22 C -0.161 4.161 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.276 0.724 27 H 0.151 0.849 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 4.337 22.904 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.131 3.869 3 H 0.055 0.945 4 C -0.571 4.571 5 H 0.063 0.937 6 C -0.166 4.166 7 N -0.562 5.562 8 Si 0.754 3.246 9 H -0.196 1.196 10 H -0.189 1.189 11 H -0.175 1.175 12 O -0.283 6.283 13 C 0.321 3.679 14 O -0.427 6.427 15 C -0.232 4.232 16 C 0.047 3.953 17 C -0.149 4.149 18 C -0.183 4.183 19 C -0.201 4.201 20 C -0.164 4.164 21 C -0.197 4.197 22 C -0.198 4.198 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.169 0.831 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.093 4.684 22.636 23.116 hybrid contribution 0.087 0.487 -1.157 1.258 sum 0.180 5.171 21.480 22.094 Atomic orbital electron populations 1.22116 0.95549 1.01964 1.00606 1.20728 0.92838 0.92925 0.80369 0.94529 1.20955 1.45965 0.94818 0.95313 0.93684 1.25672 0.93013 1.03387 0.94540 1.69969 1.45403 1.38270 1.02561 0.85982 0.80088 0.79899 0.78616 1.19588 1.18917 1.17466 1.86706 1.76648 1.43674 1.21278 1.22126 0.74650 0.85578 0.85544 1.90738 1.49974 1.16961 1.85002 1.21813 1.09556 1.02249 0.89579 1.21446 0.88486 0.92585 0.92758 1.20917 0.94523 0.94524 1.04897 1.23343 1.00494 1.03868 0.90641 1.22748 0.94283 1.02466 1.00637 1.21221 1.02204 0.99927 0.93049 1.23409 1.00218 1.01611 0.94500 1.23072 0.90624 1.03155 1.02899 0.92251 0.91733 0.93423 0.91425 0.83133 0.87787 0.86624 0.86797 0.89816 0.90558 0.84937 0.87086 0.86201 0.86393 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.59 9.53 71.98 0.69 -5.91 16 2 C 0.19 9.70 2.22 29.85 0.07 9.77 16 3 H 0.04 1.98 4.32 -2.39 -0.01 1.97 16 4 C -0.53 -32.08 9.25 25.60 0.24 -31.84 16 5 H 0.04 2.98 8.06 -2.91 -0.02 2.96 16 6 C 0.03 2.05 5.47 84.65 0.46 2.51 16 7 N -0.92 -57.10 13.96 21.45 0.30 -56.80 16 8 Si 0.93 45.26 26.98 68.60 1.85 47.11 16 9 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.25 -11.70 6.83 99.48 0.68 -11.02 16 12 O -0.37 -18.09 9.88 -57.15 -0.56 -18.66 16 13 C 0.47 20.04 7.61 70.11 0.53 20.58 16 14 O -0.53 -23.74 12.05 19.72 0.24 -23.51 16 15 C -0.21 -6.81 9.76 23.40 0.23 -6.58 16 16 C 0.05 1.23 5.32 -17.60 -0.09 1.14 16 17 C -0.13 -3.41 3.54 -11.54 -0.04 -3.45 16 18 C -0.15 -2.72 7.72 30.60 0.24 -2.48 16 19 C -0.16 -4.44 8.21 30.60 0.25 -4.19 16 20 C -0.15 -2.56 5.99 -11.54 -0.07 -2.63 16 21 C -0.16 -2.02 8.85 30.59 0.27 -1.75 16 22 C -0.16 -2.38 10.23 30.59 0.31 -2.07 16 23 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 24 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.10 3.05 8.01 -2.38 -0.02 3.03 16 29 H 0.12 1.74 7.02 -2.39 -0.02 1.72 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 1.42 5.11 -2.39 -0.01 1.40 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -69.81 307.90 5.93 -63.88 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.02 Total: 14.87 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 3.08 Total: -26.90 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.30 Total: -56.80 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.33 Total: -42.16 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.85 Total: 47.11 kcal Total: -69.81 5.93 -63.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.944 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds