Wall clock time and date at job start Mon Mar 30 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33087 * 119.99985 * 2 1 4 4 C 1.46956 * 119.99662 * 350.60546 * 3 2 1 5 5 O 1.21527 * 120.00226 * 354.11816 * 4 3 2 6 6 O 1.34798 * 119.99789 * 174.11814 * 4 3 2 7 7 C 1.45193 * 117.00328 * 184.98136 * 6 4 3 8 8 C 1.50698 * 112.85323 * 294.46389 * 7 6 4 9 9 H 1.08001 * 120.00603 * 128.81289 * 8 7 6 10 10 C 1.37879 * 119.99811 * 308.80973 * 8 7 6 11 11 N 1.31521 * 119.99607 * 4.67728 * 10 8 7 12 12 Si 1.86794 * 120.00285 * 184.67710 * 10 8 7 13 13 H 1.48499 * 109.46988 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47357 * 120.00007 * 12 10 8 15 15 H 1.48503 * 109.47141 * 240.00018 * 12 10 8 16 16 C 1.53775 * 113.61743 * 163.25912 * 7 6 4 17 17 C 1.53959 * 87.02363 * 220.05143 * 16 7 6 18 18 C 1.53782 * 87.10872 * 25.36321 * 17 16 7 19 19 C 1.50703 * 120.00339 * 180.02562 * 2 1 3 20 20 C 1.52997 * 117.49482 * 8.74777 * 19 2 1 21 21 C 1.52997 * 117.49559 * 300.08788 * 19 2 1 22 22 H 1.09000 * 109.46963 * 80.37452 * 1 2 3 23 23 H 1.09001 * 109.46992 * 200.37562 * 1 2 3 24 24 H 1.08998 * 109.47355 * 320.37476 * 1 2 3 25 25 H 1.07995 * 119.99999 * 170.60921 * 3 2 1 26 26 H 0.97006 * 119.99500 * 184.99901 * 11 10 8 27 27 H 1.09007 * 113.61793 * 334.57273 * 16 7 6 28 28 H 1.08998 * 113.61480 * 105.47611 * 16 7 6 29 29 H 1.08995 * 113.53705 * 270.81154 * 17 16 7 30 30 H 1.09001 * 113.74029 * 139.94173 * 17 16 7 31 31 H 1.08990 * 113.61689 * 220.08715 * 18 17 16 32 32 H 1.09003 * 113.69220 * 89.19558 * 18 17 16 33 33 H 1.08995 * 115.54843 * 154.41205 * 19 2 1 34 34 H 1.09000 * 117.49951 * 359.97438 * 20 19 2 35 35 H 1.08997 * 117.49732 * 145.02286 * 20 19 2 36 36 H 1.09006 * 117.49697 * 214.97461 * 21 19 2 37 37 H 1.08995 * 117.50310 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1526 0.0000 4 6 1.4523 2.4167 -0.2077 5 8 0.2693 2.4036 -0.4855 6 8 2.1041 3.5907 -0.0902 7 6 1.3083 4.8003 -0.1987 8 6 0.7101 4.9863 -1.5693 9 1 -0.3468 5.1817 -1.6754 10 6 1.5121 4.9073 -2.6880 11 7 2.7799 4.5789 -2.5663 12 14 0.7983 5.2666 -4.3764 13 1 -0.6404 5.6094 -4.2427 14 1 1.5249 6.4080 -4.9884 15 1 0.9427 4.0674 -5.2403 16 6 2.0169 6.0543 0.3396 17 6 0.6582 6.4695 0.9328 18 6 0.2947 4.9753 0.9446 19 6 2.2606 -1.3051 -0.0006 20 6 1.4522 -2.5874 -0.2076 21 6 2.0246 -2.2575 1.1733 22 1 -0.3633 0.1718 -1.0132 23 1 -0.3633 -0.9634 0.3578 24 1 -0.3634 0.7915 0.6554 25 1 3.2415 1.1588 0.1526 26 1 3.3613 4.5937 -3.3426 27 1 2.7746 5.8383 1.0930 28 1 2.3754 6.7231 -0.4429 29 1 0.0483 7.0619 0.2508 30 1 0.7296 6.9094 1.9275 31 1 -0.7351 4.7741 0.6498 32 1 0.5799 4.4625 1.8632 33 1 3.2637 -1.2685 -0.4253 34 1 0.3752 -2.4872 -0.3429 35 1 1.9237 -3.3947 -0.7680 36 1 2.8725 -2.8479 1.5207 37 1 1.3247 -1.9401 1.9462 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788145773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:21 Heat of formation + Delta-G solvation = -23.281365 kcal Electronic energy + Delta-G solvation = -18755.529628 eV Core-core repulsion = 15886.091401 eV Total energy + Delta-G solvation = -2869.438227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.26212 -38.10462 -36.85248 -34.10740 -32.64746 -32.21430 -27.60787 -26.10001 -24.56433 -24.19499 -22.65449 -22.38186 -20.12892 -18.50333 -17.89041 -16.95081 -15.80653 -15.51492 -14.99207 -14.71383 -14.35141 -14.03496 -13.80735 -12.94953 -12.76090 -12.67342 -12.02579 -11.78761 -11.57398 -11.32904 -11.14447 -11.07600 -10.91704 -10.82984 -10.78123 -10.45232 -10.33397 -10.23755 -9.82555 -9.75506 -9.06688 -8.75101 -8.53428 -8.46567 -8.32685 -6.02524 -4.13685 1.82098 3.28845 3.37412 3.42372 3.84552 4.12694 4.25645 4.41587 4.82877 4.88147 4.96356 5.19775 5.26455 5.45583 5.55816 5.73062 5.77456 5.82039 5.94124 5.95937 6.05498 6.10613 6.20658 6.24569 6.44345 6.49030 6.59898 6.65786 6.88134 6.92579 6.97425 7.11255 7.25969 7.58409 7.84031 8.03002 8.44640 8.86264 9.36773 9.56986 11.01884 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.006983 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.443757 B = 4008.937587 C = 4679.226757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.032 4.032 3 C -0.178 4.178 4 C 0.493 3.507 5 O -0.509 6.509 6 O -0.332 6.332 7 C 0.243 3.757 8 C -0.510 4.510 9 H 0.066 0.934 10 C 0.074 3.926 11 N -0.861 5.861 12 Si 0.890 3.110 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.284 1.284 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.161 4.161 19 C -0.122 4.122 20 C -0.174 4.174 21 C -0.171 4.171 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.260 0.740 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 -8.938 6.384 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.033 4.033 3 C -0.197 4.197 4 C 0.338 3.662 5 O -0.401 6.401 6 O -0.247 6.247 7 C 0.209 3.791 8 C -0.548 4.548 9 H 0.084 0.916 10 C -0.131 4.131 11 N -0.497 5.497 12 Si 0.718 3.282 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.210 1.210 16 C -0.153 4.153 17 C -0.168 4.168 18 C -0.199 4.199 19 C -0.140 4.140 20 C -0.211 4.211 21 C -0.208 4.208 22 H 0.099 0.901 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.144 0.856 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.524 -8.966 6.188 10.907 hybrid contribution -0.130 0.225 -1.100 1.130 sum -0.654 -8.741 5.089 10.135 Atomic orbital electron populations 1.21026 0.90991 1.01009 1.04004 1.21632 0.95966 0.92035 0.93642 1.21961 1.00597 0.90621 1.06525 1.20772 0.85453 0.85137 0.74814 1.90711 1.16891 1.88532 1.43971 1.86522 1.43324 1.14433 1.80469 1.21075 0.86482 0.78609 0.92961 1.20973 0.95093 1.49832 0.88870 0.91551 1.25033 0.95053 0.93939 0.99087 1.70114 1.04543 1.44877 1.30177 0.86559 0.79564 0.77854 0.84244 1.19548 1.20833 1.21014 1.23047 0.95261 0.98077 0.98871 1.22545 0.98842 0.96284 0.99172 1.23563 1.01176 0.96003 0.99176 1.21205 1.00074 0.88674 1.04063 1.23062 1.00542 0.97955 0.99560 1.22975 1.03568 1.02469 0.91740 0.90120 0.93280 0.89937 0.85612 0.93051 0.92209 0.91197 0.90289 0.92996 0.91841 0.92268 0.86744 0.88047 0.88538 0.88519 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 7.91 36.00 0.28 -1.59 16 2 C -0.03 -0.53 5.81 -101.14 -0.59 -1.12 16 3 C -0.18 -3.49 9.79 -37.84 -0.37 -3.86 16 4 C 0.49 12.00 7.30 34.26 0.25 12.25 16 5 O -0.51 -13.09 11.85 -19.29 -0.23 -13.32 16 6 O -0.33 -8.76 9.16 -40.76 -0.37 -9.13 16 7 C 0.24 6.26 0.61 -90.96 -0.06 6.21 16 8 C -0.51 -14.35 7.05 -34.44 -0.24 -14.59 16 9 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 10 C 0.07 2.09 5.43 -17.82 -0.10 1.99 16 11 N -0.86 -24.94 12.49 55.43 0.69 -24.24 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 C -0.11 -2.64 7.51 -25.83 -0.19 -2.83 16 17 C -0.13 -2.64 7.81 -25.82 -0.20 -2.85 16 18 C -0.16 -3.62 6.60 -25.91 -0.17 -3.79 16 19 C -0.12 -1.58 6.01 -91.77 -0.55 -2.13 16 20 C -0.17 -1.86 9.77 -26.69 -0.26 -2.12 16 21 C -0.17 -1.78 10.13 -26.69 -0.27 -2.05 16 22 H 0.08 1.45 7.80 -51.93 -0.40 1.05 16 23 H 0.05 0.64 6.11 -51.93 -0.32 0.32 16 24 H 0.08 1.50 6.61 -51.93 -0.34 1.16 16 25 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 26 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 27 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.07 1.69 8.09 -51.93 -0.42 1.27 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.46 8.09 -51.93 -0.42 1.04 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.10 1.08 6.33 -51.93 -0.33 0.75 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -31.02 308.46 -8.34 -39.35 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.58 Total: 2.35 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.47 Total: -16.47 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.69 Total: -24.24 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.60 Total: -22.45 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.02 -8.34 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.069 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds