Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33087 * 119.99985 * 2 1 4 4 C 1.46956 * 119.99662 * 350.60546 * 3 2 1 5 5 O 1.21527 * 120.00226 * 354.11816 * 4 3 2 6 6 O 1.34798 * 119.99789 * 174.11814 * 4 3 2 7 7 C 1.45193 * 117.00328 * 184.98136 * 6 4 3 8 8 C 1.50698 * 112.85323 * 294.46389 * 7 6 4 9 9 H 1.08001 * 120.00603 * 128.81289 * 8 7 6 10 10 C 1.37879 * 119.99811 * 308.80973 * 8 7 6 11 11 N 1.31521 * 119.99607 * 4.67728 * 10 8 7 12 12 Si 1.86794 * 120.00285 * 184.67710 * 10 8 7 13 13 H 1.48499 * 109.46988 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47357 * 120.00007 * 12 10 8 15 15 H 1.48503 * 109.47141 * 240.00018 * 12 10 8 16 16 C 1.53775 * 113.61743 * 163.25912 * 7 6 4 17 17 C 1.53959 * 87.02363 * 220.05143 * 16 7 6 18 18 C 1.53782 * 87.10872 * 25.36321 * 17 16 7 19 19 C 1.50703 * 120.00339 * 180.02562 * 2 1 3 20 20 C 1.52997 * 117.49482 * 8.74777 * 19 2 1 21 21 C 1.52997 * 117.49559 * 300.08788 * 19 2 1 22 22 H 1.09000 * 109.46963 * 80.37452 * 1 2 3 23 23 H 1.09001 * 109.46992 * 200.37562 * 1 2 3 24 24 H 1.08998 * 109.47355 * 320.37476 * 1 2 3 25 25 H 1.07995 * 119.99999 * 170.60921 * 3 2 1 26 26 H 0.97006 * 119.99500 * 184.99901 * 11 10 8 27 27 H 1.09007 * 113.61793 * 334.57273 * 16 7 6 28 28 H 1.08998 * 113.61480 * 105.47611 * 16 7 6 29 29 H 1.08995 * 113.53705 * 270.81154 * 17 16 7 30 30 H 1.09001 * 113.74029 * 139.94173 * 17 16 7 31 31 H 1.08990 * 113.61689 * 220.08715 * 18 17 16 32 32 H 1.09003 * 113.69220 * 89.19558 * 18 17 16 33 33 H 1.08995 * 115.54843 * 154.41205 * 19 2 1 34 34 H 1.09000 * 117.49951 * 359.97438 * 20 19 2 35 35 H 1.08997 * 117.49732 * 145.02286 * 20 19 2 36 36 H 1.09006 * 117.49697 * 214.97461 * 21 19 2 37 37 H 1.08995 * 117.50310 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1526 0.0000 4 6 1.4523 2.4167 -0.2077 5 8 0.2693 2.4036 -0.4855 6 8 2.1041 3.5907 -0.0902 7 6 1.3083 4.8003 -0.1987 8 6 0.7101 4.9863 -1.5693 9 1 -0.3468 5.1817 -1.6754 10 6 1.5121 4.9073 -2.6880 11 7 2.7799 4.5789 -2.5663 12 14 0.7983 5.2666 -4.3764 13 1 -0.6404 5.6094 -4.2427 14 1 1.5249 6.4080 -4.9884 15 1 0.9427 4.0674 -5.2403 16 6 2.0169 6.0543 0.3396 17 6 0.6582 6.4695 0.9328 18 6 0.2947 4.9753 0.9446 19 6 2.2606 -1.3051 -0.0006 20 6 1.4522 -2.5874 -0.2076 21 6 2.0246 -2.2575 1.1733 22 1 -0.3633 0.1718 -1.0132 23 1 -0.3633 -0.9634 0.3578 24 1 -0.3634 0.7915 0.6554 25 1 3.2415 1.1588 0.1526 26 1 3.3613 4.5937 -3.3426 27 1 2.7746 5.8383 1.0930 28 1 2.3754 6.7231 -0.4429 29 1 0.0483 7.0619 0.2508 30 1 0.7296 6.9094 1.9275 31 1 -0.7351 4.7741 0.6498 32 1 0.5799 4.4625 1.8632 33 1 3.2637 -1.2685 -0.4253 34 1 0.3752 -2.4872 -0.3429 35 1 1.9237 -3.3947 -0.7680 36 1 2.8725 -2.8479 1.5207 37 1 1.3247 -1.9401 1.9462 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788145773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = -39.389072 kcal Electronic energy + Delta-G solvation = -18756.228110 eV Core-core repulsion = 15886.091401 eV Total energy + Delta-G solvation = -2870.136710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07034 -39.46860 -38.41274 -35.95995 -34.35700 -34.03972 -29.09614 -28.11115 -26.39067 -25.72505 -24.29076 -23.19886 -21.67009 -20.44864 -19.24336 -18.84457 -17.34585 -16.97247 -16.83973 -16.60601 -16.10623 -15.66138 -15.29777 -14.63587 -14.34157 -13.95858 -13.79370 -13.51356 -12.99401 -12.93150 -12.87885 -12.78036 -12.41689 -12.29350 -12.12588 -12.11389 -11.84069 -11.75162 -11.60662 -11.33108 -10.93773 -10.78725 -10.39532 -10.37272 -9.83127 -8.15948 -6.32626 0.34513 1.32389 1.35147 1.46400 2.32945 2.36047 2.54600 3.02011 3.12904 3.69981 3.86845 3.93741 3.99048 4.02859 4.14977 4.21328 4.26385 4.44823 4.65335 4.68702 4.76989 4.83080 4.84334 4.91406 5.00198 5.12067 5.14441 5.14540 5.27864 5.35019 5.38502 5.50929 5.53270 5.66296 5.76333 6.05701 6.50563 6.69482 7.33208 7.54803 8.88203 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.006983 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.443757 B = 4008.937587 C = 4679.226757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.006 3.994 3 C -0.223 4.223 4 C 0.482 3.518 5 O -0.538 6.538 6 O -0.351 6.351 7 C 0.214 3.786 8 C -0.523 4.523 9 H 0.049 0.951 10 C 0.029 3.971 11 N -0.888 5.888 12 Si 0.947 3.053 13 H -0.270 1.270 14 H -0.268 1.268 15 H -0.287 1.287 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.151 4.151 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.261 0.739 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -10.513 7.103 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.005 3.995 3 C -0.242 4.242 4 C 0.330 3.670 5 O -0.432 6.432 6 O -0.267 6.267 7 C 0.179 3.821 8 C -0.561 4.561 9 H 0.068 0.932 10 C -0.174 4.174 11 N -0.525 5.525 12 Si 0.772 3.228 13 H -0.194 1.194 14 H -0.193 1.193 15 H -0.213 1.213 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.193 4.193 19 C -0.171 4.171 20 C -0.199 4.199 21 C -0.187 4.187 22 H 0.082 0.918 23 H 0.106 0.894 24 H 0.079 0.921 25 H 0.154 0.846 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.573 -10.534 6.915 12.614 hybrid contribution -0.171 0.571 -1.286 1.418 sum -0.744 -9.963 5.629 11.467 Atomic orbital electron populations 1.21009 0.91046 1.02394 1.02580 1.22064 0.96146 0.92989 0.88311 1.21865 1.01075 0.89462 1.11756 1.21589 0.85562 0.85899 0.73992 1.90675 1.17979 1.88885 1.45657 1.86501 1.44035 1.15334 1.80838 1.21375 0.88231 0.79408 0.93044 1.21130 0.94359 1.49870 0.90719 0.93229 1.25707 0.95439 0.93953 1.02266 1.70209 1.05451 1.45838 1.31009 0.85681 0.78978 0.77868 0.80237 1.19438 1.19293 1.21293 1.23027 0.96902 0.96537 0.98694 1.22467 0.96299 0.94789 1.01059 1.23483 0.99437 0.97947 0.98403 1.21269 1.00608 0.87569 1.07665 1.23215 1.00444 0.96352 0.99858 1.23114 1.04135 1.00255 0.91223 0.91819 0.89353 0.92072 0.84625 0.93006 0.90969 0.93110 0.90446 0.88936 0.93314 0.91097 0.86075 0.87932 0.86370 0.86131 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.69 7.91 71.24 0.56 -3.12 16 2 C 0.01 0.18 5.81 -17.60 -0.10 0.08 16 3 C -0.22 -8.91 9.79 23.40 0.23 -8.68 16 4 C 0.48 24.33 7.30 70.11 0.51 24.84 16 5 O -0.54 -28.83 11.85 19.75 0.23 -28.60 16 6 O -0.35 -19.14 9.16 -57.09 -0.52 -19.67 16 7 C 0.21 11.28 0.61 -11.01 -0.01 11.27 16 8 C -0.52 -30.29 7.05 25.60 0.18 -30.11 16 9 H 0.05 2.94 7.82 -2.91 -0.02 2.92 16 10 C 0.03 1.66 5.43 84.65 0.46 2.12 16 11 N -0.89 -52.69 12.49 21.45 0.27 -52.42 16 12 Si 0.95 45.65 29.54 68.60 2.03 47.68 16 13 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 16 C -0.11 -5.25 7.51 31.18 0.23 -5.01 16 17 C -0.11 -4.26 7.81 31.18 0.24 -4.02 16 18 C -0.15 -6.99 6.60 31.12 0.21 -6.79 16 19 C -0.15 -3.58 6.01 -11.54 -0.07 -3.65 16 20 C -0.16 -2.83 9.77 30.62 0.30 -2.53 16 21 C -0.15 -2.55 10.13 30.62 0.31 -2.24 16 22 H 0.06 2.32 7.80 -2.39 -0.02 2.30 16 23 H 0.09 2.11 6.11 -2.39 -0.01 2.09 16 24 H 0.06 2.27 6.61 -2.39 -0.02 2.25 16 25 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 26 H 0.26 14.66 8.32 -92.70 -0.77 13.89 16 27 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 28 H 0.05 2.49 8.09 -2.39 -0.02 2.47 16 29 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.05 2.29 8.09 -2.39 -0.02 2.27 16 32 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.10 1.79 6.33 -2.39 -0.02 1.77 16 35 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -69.35 308.46 6.11 -63.24 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.05 Total: 17.61 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.06 Total: -27.84 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.27 Total: -52.42 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -0.29 Total: -48.27 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.35 6.11 -63.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.854 kcal (2) G-P(sol) polarization free energy of solvation -69.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds